Wall clock time and date at job start Sat Apr 11 2020 06:45:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46895 * 111.00213 * 2 1
4 4 C 1.38445 * 111.00131 * 123.95279 * 2 1 3
5 5 N 1.31984 * 120.11912 * 294.99327 * 4 2 1
6 6 C 1.32672 * 122.65335 * 180.02562 * 5 4 2
7 7 C 1.36041 * 121.96571 * 359.97438 * 6 5 4
8 8 C 1.40926 * 118.85653 * 0.03787 * 7 6 5
9 9 C 1.40026 * 122.07532 * 180.02562 * 8 7 6
10 10 C 1.37941 * 119.33127 * 179.97438 * 9 8 7
11 11 N 1.39751 * 119.66866 * 180.02562 * 10 9 8
12 12 C 1.34774 * 120.00186 * 34.85134 * 11 10 9
13 13 O 1.21288 * 120.00149 * 5.32169 * 12 11 10
14 14 C 1.50703 * 120.00187 * 185.31458 * 12 11 10
15 15 H 1.08998 * 109.47051 * 320.00273 * 14 12 11
16 16 N 1.46901 * 109.46993 * 200.00304 * 14 12 11
17 17 C 1.52999 * 109.46779 * 80.00485 * 14 12 11
18 18 C 1.52999 * 109.46949 * 185.00149 * 17 14 12
19 19 C 1.50703 * 109.47282 * 179.97438 * 18 17 14
20 20 H 1.08002 * 119.99956 * 0.02562 * 19 18 17
21 21 C 1.37872 * 120.00111 * 179.97438 * 19 18 17
22 22 N 1.31515 * 120.00268 * 180.02562 * 21 19 18
23 23 Si 1.86805 * 120.00194 * 0.02562 * 21 19 18
24 24 H 1.48500 * 109.46751 * 89.99652 * 23 21 19
25 25 H 1.48496 * 109.47073 * 209.99536 * 23 21 19
26 26 H 1.48497 * 109.46724 * 330.00147 * 23 21 19
27 27 C 1.39939 * 120.66145 * 359.73192 * 10 9 8
28 28 C 1.36090 * 120.97076 * 0.55854 * 27 10 9
29 29 C 1.40166 * 119.78437 * 359.44153 * 28 27 10
30 30 H 1.09007 * 109.46846 * 296.04979 * 1 2 3
31 31 H 1.09003 * 109.46652 * 56.04427 * 1 2 3
32 32 H 1.08991 * 109.47206 * 176.04782 * 1 2 3
33 33 H 1.09003 * 109.47455 * 178.95108 * 3 2 1
34 34 H 1.08995 * 109.47329 * 298.95243 * 3 2 1
35 35 H 1.09006 * 109.47453 * 58.95023 * 3 2 1
36 36 H 1.07993 * 119.01702 * 179.97438 * 6 5 4
37 37 H 1.07995 * 120.57394 * 180.02562 * 7 6 5
38 38 H 1.08008 * 120.33376 * 359.94474 * 9 8 7
39 39 H 0.97004 * 119.99937 * 214.85596 * 11 10 9
40 40 H 1.00902 * 110.99664 * 176.04746 * 16 14 12
41 41 H 1.00907 * 110.99736 * 299.99793 * 16 14 12
42 42 H 1.08997 * 109.47333 * 304.99810 * 17 14 12
43 43 H 1.08995 * 109.47617 * 64.99766 * 17 14 12
44 44 H 1.09005 * 109.47156 * 299.99852 * 18 17 14
45 45 H 1.09004 * 109.47410 * 59.99635 * 18 17 14
46 46 H 0.96998 * 120.00589 * 180.02562 * 22 21 19
47 47 H 1.08002 * 119.51069 * 180.30346 * 27 10 9
48 48 H 1.08005 * 120.10602 * 179.71486 * 28 27 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.9652 -0.7219 1.0721
5 7 1.7522 -0.3054 2.3063
6 6 2.2045 -0.9571 3.3697
7 6 2.9230 -2.1069 3.2581
8 6 3.1936 -2.6178 1.9728
9 6 3.9258 -3.7956 1.7798
10 6 4.1571 -4.2448 0.4962
11 7 4.8866 -5.4197 0.2955
12 6 4.7736 -6.4405 1.1682
13 8 3.9684 -6.3785 2.0731
14 6 5.6478 -7.6591 1.0197
15 1 5.7421 -7.9121 -0.0363
16 7 5.0427 -8.7866 1.7413
17 6 7.0330 -7.3667 1.5999
18 6 7.9573 -8.5575 1.3380
19 6 9.3219 -8.2693 1.9089
20 1 9.5109 -7.3308 2.4088
21 6 10.3288 -9.2041 1.7938
22 7 11.5195 -8.9529 2.2924
23 14 10.0017 -10.8277 0.9297
24 1 10.3048 -10.6880 -0.5173
25 1 10.8653 -11.8835 1.5166
26 1 8.5751 -11.2018 1.1027
27 6 3.6634 -3.5389 -0.6066
28 6 2.9545 -2.3890 -0.4420
29 6 2.7019 -1.9056 0.8493
30 1 -0.3633 0.4513 0.9233
31 1 -0.3633 0.5740 -0.8525
32 1 -0.3633 -1.0251 -0.0708
33 1 3.0850 1.3424 0.0188
34 1 1.6613 1.8889 -0.8992
35 1 1.6309 1.9006 0.8804
36 1 1.9962 -0.5630 4.3534
37 1 3.2799 -2.6194 4.1392
38 1 4.3060 -4.3466 2.6274
39 1 5.4742 -5.5006 -0.4721
40 1 5.5763 -9.6319 1.6039
41 1 4.9446 -8.5765 2.7233
42 1 7.4449 -6.4759 1.1256
43 1 6.9496 -7.2008 2.6739
44 1 7.5454 -9.4484 1.8123
45 1 8.0408 -8.7234 0.2639
46 1 12.2280 -9.6103 2.2111
47 1 3.8514 -3.9100 -1.6033
48 1 2.5839 -1.8529 -1.3033
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001578429600.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:26
Heat of formation + Delta-G solvation = 29.875371 kcal
Electronic energy + Delta-G solvation = -28801.115667 eV
Core-core repulsion = 24855.905999 eV
Total energy + Delta-G solvation = -3945.209668 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.35532 -40.26236 -38.12745 -36.87813 -35.76353 -34.61932 -32.88449 -32.41237
-30.44704 -30.40105 -29.41809 -27.96925 -27.08303 -25.44518 -24.29843 -23.92297
-22.79331 -21.39949 -20.67738 -19.99301 -18.59553 -17.88201 -17.63504 -16.97060
-16.72932 -16.19428 -15.69340 -15.64990 -15.08049 -14.88951 -14.56818 -14.42361
-14.29517 -13.94306 -13.91129 -13.76958 -13.44651 -13.20122 -13.06712 -12.79089
-12.75241 -12.68818 -12.45907 -12.27449 -12.07640 -11.93247 -11.52686 -11.39880
-11.04645 -10.50807 -10.43181 -10.21302 -10.15016 -9.98857 -9.95057 -9.57408
-9.37953 -9.03605 -8.67592 -8.64060 -8.45680 -7.97933 -6.16677 -4.16908
0.15117 0.68654 1.72924 2.46720 2.87064 2.98064 3.20648 3.27943
3.29373 3.29942 3.86065 4.23738 4.32569 4.44710 4.60406 4.70558
4.72855 4.88008 4.89988 4.95783 4.98087 5.02948 5.15030 5.15646
5.18790 5.29020 5.31748 5.41369 5.44713 5.51901 5.54005 5.61527
5.69655 5.94281 6.02158 6.05182 6.11490 6.21099 6.21780 6.31429
6.37089 6.54970 6.75193 6.94060 7.00284 7.12003 7.14363 7.36110
7.58869 7.66899 7.71377 8.09059 8.38518 8.86843 9.44048 10.96388
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.022113 B = 0.002021 C = 0.002010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1265.909991 B =13854.212184 C =13929.669522
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.494 5.494
3 C 0.030 3.970
4 C 0.338 3.662
5 N -0.525 5.525
6 C 0.088 3.912
7 C -0.156 4.156
8 C 0.001 3.999
9 C -0.126 4.126
10 C 0.179 3.821
11 N -0.677 5.677
12 C 0.526 3.474
13 O -0.512 6.512
14 C 0.074 3.926
15 H 0.101 0.899
16 N -0.830 5.830
17 C -0.130 4.130
18 C -0.010 4.010
19 C -0.526 4.526
20 H 0.071 0.929
21 C 0.067 3.933
22 N -0.899 5.899
23 Si 0.882 3.118
24 H -0.277 1.277
25 H -0.287 1.287
26 H -0.265 1.265
27 C -0.143 4.143
28 C -0.049 4.049
29 C -0.102 4.102
30 H 0.042 0.958
31 H 0.076 0.924
32 H 0.069 0.931
33 H 0.068 0.932
34 H 0.076 0.924
35 H 0.043 0.957
36 H 0.151 0.849
37 H 0.139 0.861
38 H 0.143 0.857
39 H 0.415 0.585
40 H 0.353 0.647
41 H 0.349 0.651
42 H 0.064 0.936
43 H 0.063 0.937
44 H 0.017 0.983
45 H 0.015 0.985
46 H 0.264 0.736
47 H 0.132 0.868
48 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.441 16.764 -6.646 27.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 N -0.217 5.217
3 C -0.117 4.117
4 C 0.096 3.904
5 N -0.237 5.237
6 C -0.056 4.056
7 C -0.176 4.176
8 C -0.005 4.005
9 C -0.147 4.147
10 C 0.083 3.917
11 N -0.323 5.323
12 C 0.314 3.686
13 O -0.385 6.385
14 C -0.041 4.041
15 H 0.118 0.882
16 N -0.363 5.363
17 C -0.170 4.170
18 C -0.047 4.047
19 C -0.563 4.563
20 H 0.089 0.911
21 C -0.135 4.135
22 N -0.537 5.537
23 Si 0.709 3.291
24 H -0.202 1.202
25 H -0.213 1.213
26 H -0.190 1.190
27 C -0.163 4.163
28 C -0.070 4.070
29 C -0.107 4.107
30 H 0.061 0.939
31 H 0.095 0.905
32 H 0.088 0.912
33 H 0.087 0.913
34 H 0.094 0.906
35 H 0.062 0.938
36 H 0.169 0.831
37 H 0.157 0.843
38 H 0.161 0.839
39 H 0.251 0.749
40 H 0.169 0.831
41 H 0.163 0.837
42 H 0.083 0.917
43 H 0.081 0.919
44 H 0.035 0.965
45 H 0.033 0.967
46 H 0.074 0.926
47 H 0.150 0.850
48 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -21.748 17.284 -6.569 28.546
hybrid contribution 1.533 -1.334 0.350 2.062
sum -20.215 15.949 -6.219 26.490
Atomic orbital electron populations
1.22422 0.84879 1.02816 1.01698 1.59956 1.09476 1.15210 1.37061
1.22397 1.00700 0.86917 1.01728 1.19893 0.92298 0.90783 0.87473
1.67503 1.22295 1.34494 0.99440 1.21874 0.94850 0.92320 0.96592
1.21906 1.00728 0.97914 0.97090 1.17965 0.95711 0.94026 0.92782
1.21096 1.01342 0.95314 0.96959 1.17806 0.93735 0.86500 0.93702
1.43690 1.45398 1.13570 1.29627 1.21087 0.82704 0.83806 0.81023
1.90679 1.35352 1.80188 1.32252 1.21516 0.92364 0.89283 1.00981
0.88150 1.58737 1.55836 1.04613 1.17095 1.22228 0.92255 1.01599
1.00929 1.19575 0.95443 0.93153 0.96575 1.21041 0.93276 1.04527
1.37494 0.91051 1.25050 0.94942 0.98414 0.95058 1.69906 1.02470
1.35734 1.45638 0.86757 0.78668 0.83702 0.79991 1.20234 1.21302
1.18993 1.20797 1.00449 0.96975 0.98092 1.20781 0.95402 0.94412
0.96359 1.18476 1.01718 0.96177 0.94288 0.93885 0.90477 0.91230
0.91336 0.90550 0.93802 0.83139 0.84295 0.83881 0.74853 0.83125
0.83739 0.91735 0.91870 0.96525 0.96702 0.92568 0.84990 0.83766
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 9.47 60.07 0.57 0.79 16
2 N -0.49 -4.49 4.16 -188.58 -0.79 -5.27 16
3 C 0.03 0.23 9.38 60.06 0.56 0.79 16
4 C 0.34 3.82 5.36 -155.12 -0.83 2.99 16
5 N -0.52 -6.18 9.59 -12.47 -0.12 -6.30 16
6 C 0.09 0.94 11.06 -17.98 -0.20 0.74 16
7 C -0.16 -1.76 9.87 -39.35 -0.39 -2.15 16
8 C 0.00 0.02 5.74 -106.84 -0.61 -0.60 16
9 C -0.13 -1.71 8.42 -39.02 -0.33 -2.04 16
10 C 0.18 2.20 6.25 -83.72 -0.52 1.68 16
11 N -0.68 -8.01 5.32 -9.87 -0.05 -8.06 16
12 C 0.53 7.72 6.79 -10.98 -0.07 7.64 16
13 O -0.51 -8.94 14.02 5.55 0.08 -8.86 16
14 C 0.07 1.08 3.21 -68.86 -0.22 0.86 16
15 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16
16 N -0.83 -12.45 8.94 -5.65 -0.05 -12.50 16
17 C -0.13 -2.28 4.78 -26.73 -0.13 -2.41 16
18 C -0.01 -0.21 3.81 -27.88 -0.11 -0.32 16
19 C -0.53 -14.16 9.66 -34.44 -0.33 -14.49 16
20 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16
21 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16
22 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16
23 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16
24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
26 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16
27 C -0.14 -1.43 9.86 -39.72 -0.39 -1.83 16
28 C -0.05 -0.50 9.54 -39.63 -0.38 -0.88 16
29 C -0.10 -1.21 5.76 -106.68 -0.61 -1.83 16
30 H 0.04 0.36 7.94 -51.93 -0.41 -0.05 16
31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16
34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.04 0.36 7.97 -51.93 -0.41 -0.05 16
36 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16
37 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16
38 H 0.14 2.12 6.50 -52.48 -0.34 1.78 16
39 H 0.41 3.72 8.82 -40.82 -0.36 3.36 16
40 H 0.35 5.16 7.55 -39.29 -0.30 4.87 16
41 H 0.35 5.33 8.58 -39.29 -0.34 5.00 16
42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
44 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16
45 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16
46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
47 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16
48 H 0.14 1.19 7.59 -52.48 -0.40 0.80 16
LS Contribution 394.51 15.07 5.95 5.95
Total: -1.00 -33.04 394.51 -10.05 -43.08
By element:
Atomic # 1 Polarization: 18.49 SS G_CDS: -7.07 Total: 11.42 kcal
Atomic # 6 Polarization: -5.18 SS G_CDS: -4.10 Total: -9.27 kcal
Atomic # 7 Polarization: -58.00 SS G_CDS: -0.23 Total: -58.24 kcal
Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.86 kcal
Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -33.04 -10.05 -43.08 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001578429600.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.960 kcal
(2) G-P(sol) polarization free energy of solvation -33.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.924 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.875 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds