Wall clock time and date at job start Sat Apr 11 2020 06:45:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46895 * 111.00213 * 2 1
4 4 C 1.38445 * 111.00131 * 123.95279 * 2 1 3
5 5 N 1.31984 * 120.11912 * 294.99327 * 4 2 1
6 6 C 1.32672 * 122.65335 * 180.02562 * 5 4 2
7 7 C 1.36041 * 121.96571 * 359.97438 * 6 5 4
8 8 C 1.40926 * 118.85653 * 0.03787 * 7 6 5
9 9 C 1.40026 * 122.07532 * 180.02562 * 8 7 6
10 10 C 1.37941 * 119.33127 * 179.97438 * 9 8 7
11 11 N 1.39751 * 119.66866 * 180.02562 * 10 9 8
12 12 C 1.34774 * 120.00186 * 34.85134 * 11 10 9
13 13 O 1.21288 * 120.00149 * 5.32169 * 12 11 10
14 14 C 1.50703 * 120.00187 * 185.31458 * 12 11 10
15 15 H 1.08998 * 109.47051 * 320.00273 * 14 12 11
16 16 N 1.46901 * 109.46993 * 200.00304 * 14 12 11
17 17 C 1.52999 * 109.46779 * 80.00485 * 14 12 11
18 18 C 1.52999 * 109.46949 * 185.00149 * 17 14 12
19 19 C 1.50703 * 109.47282 * 179.97438 * 18 17 14
20 20 H 1.08002 * 119.99956 * 0.02562 * 19 18 17
21 21 C 1.37872 * 120.00111 * 179.97438 * 19 18 17
22 22 N 1.31515 * 120.00268 * 180.02562 * 21 19 18
23 23 Si 1.86805 * 120.00194 * 0.02562 * 21 19 18
24 24 H 1.48500 * 109.46751 * 89.99652 * 23 21 19
25 25 H 1.48496 * 109.47073 * 209.99536 * 23 21 19
26 26 H 1.48497 * 109.46724 * 330.00147 * 23 21 19
27 27 C 1.39939 * 120.66145 * 359.73192 * 10 9 8
28 28 C 1.36090 * 120.97076 * 0.55854 * 27 10 9
29 29 C 1.40166 * 119.78437 * 359.44153 * 28 27 10
30 30 H 1.09007 * 109.46846 * 296.04979 * 1 2 3
31 31 H 1.09003 * 109.46652 * 56.04427 * 1 2 3
32 32 H 1.08991 * 109.47206 * 176.04782 * 1 2 3
33 33 H 1.09003 * 109.47455 * 178.95108 * 3 2 1
34 34 H 1.08995 * 109.47329 * 298.95243 * 3 2 1
35 35 H 1.09006 * 109.47453 * 58.95023 * 3 2 1
36 36 H 1.07993 * 119.01702 * 179.97438 * 6 5 4
37 37 H 1.07995 * 120.57394 * 180.02562 * 7 6 5
38 38 H 1.08008 * 120.33376 * 359.94474 * 9 8 7
39 39 H 0.97004 * 119.99937 * 214.85596 * 11 10 9
40 40 H 1.00902 * 110.99664 * 176.04746 * 16 14 12
41 41 H 1.00907 * 110.99736 * 299.99793 * 16 14 12
42 42 H 1.08997 * 109.47333 * 304.99810 * 17 14 12
43 43 H 1.08995 * 109.47617 * 64.99766 * 17 14 12
44 44 H 1.09005 * 109.47156 * 299.99852 * 18 17 14
45 45 H 1.09004 * 109.47410 * 59.99635 * 18 17 14
46 46 H 0.96998 * 120.00589 * 180.02562 * 22 21 19
47 47 H 1.08002 * 119.51069 * 180.30346 * 27 10 9
48 48 H 1.08005 * 120.10602 * 179.71486 * 28 27 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.9652 -0.7219 1.0721
5 7 1.7522 -0.3054 2.3063
6 6 2.2045 -0.9571 3.3697
7 6 2.9230 -2.1069 3.2581
8 6 3.1936 -2.6178 1.9728
9 6 3.9258 -3.7956 1.7798
10 6 4.1571 -4.2448 0.4962
11 7 4.8866 -5.4197 0.2955
12 6 4.7736 -6.4405 1.1682
13 8 3.9684 -6.3785 2.0731
14 6 5.6478 -7.6591 1.0197
15 1 5.7421 -7.9121 -0.0363
16 7 5.0427 -8.7866 1.7413
17 6 7.0330 -7.3667 1.5999
18 6 7.9573 -8.5575 1.3380
19 6 9.3219 -8.2693 1.9089
20 1 9.5109 -7.3308 2.4088
21 6 10.3288 -9.2041 1.7938
22 7 11.5195 -8.9529 2.2924
23 14 10.0017 -10.8277 0.9297
24 1 10.3048 -10.6880 -0.5173
25 1 10.8653 -11.8835 1.5166
26 1 8.5751 -11.2018 1.1027
27 6 3.6634 -3.5389 -0.6066
28 6 2.9545 -2.3890 -0.4420
29 6 2.7019 -1.9056 0.8493
30 1 -0.3633 0.4513 0.9233
31 1 -0.3633 0.5740 -0.8525
32 1 -0.3633 -1.0251 -0.0708
33 1 3.0850 1.3424 0.0188
34 1 1.6613 1.8889 -0.8992
35 1 1.6309 1.9006 0.8804
36 1 1.9962 -0.5630 4.3534
37 1 3.2799 -2.6194 4.1392
38 1 4.3060 -4.3466 2.6274
39 1 5.4742 -5.5006 -0.4721
40 1 5.5763 -9.6319 1.6039
41 1 4.9446 -8.5765 2.7233
42 1 7.4449 -6.4759 1.1256
43 1 6.9496 -7.2008 2.6739
44 1 7.5454 -9.4484 1.8123
45 1 8.0408 -8.7234 0.2639
46 1 12.2280 -9.6103 2.2111
47 1 3.8514 -3.9100 -1.6033
48 1 2.5839 -1.8529 -1.3033
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001578429600.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:24
Heat of formation + Delta-G solvation = 6.638546 kcal
Electronic energy + Delta-G solvation = -28802.123291 eV
Core-core repulsion = 24855.905999 eV
Total energy + Delta-G solvation = -3946.217292 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 2.24 seconds
Orbital eigenvalues (eV)
-42.24212 -41.30681 -39.02341 -37.69586 -37.12036 -35.63387 -34.82548 -33.24897
-32.10007 -31.34064 -30.28840 -28.56029 -28.49426 -26.42511 -25.56258 -24.77179
-23.90592 -22.22984 -22.21646 -21.17114 -19.51889 -19.11531 -18.70969 -18.46186
-17.78243 -17.08106 -16.56932 -16.38151 -16.29880 -16.14496 -16.01218 -15.77106
-15.18028 -15.04479 -14.88580 -14.68871 -14.61696 -14.56680 -14.31801 -14.00345
-13.68888 -13.55559 -13.39819 -13.10893 -13.07008 -12.98635 -12.71279 -12.67359
-12.28267 -12.10625 -11.86366 -11.69662 -11.44255 -11.39379 -11.10658 -10.90062
-10.77226 -10.73756 -9.75452 -9.71353 -9.50694 -8.89542 -8.29701 -6.35558
-0.71219 -0.20121 0.83149 1.38618 1.39837 1.41244 1.51911 1.86717
2.06121 2.36412 2.56857 2.98725 3.05981 3.46373 3.51039 3.68226
3.70173 3.83448 3.93844 4.04470 4.08132 4.11080 4.15385 4.28947
4.40443 4.42469 4.54264 4.57187 4.62209 4.67209 4.68732 4.76289
4.87233 4.93236 4.95334 4.97351 5.10394 5.20831 5.23331 5.35669
5.37755 5.43388 5.46300 5.62570 5.74575 5.84712 6.01462 6.16719
6.24647 6.33878 6.45802 6.73336 6.86539 7.02599 7.29346 8.86997
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.022113 B = 0.002021 C = 0.002010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1265.909991 B =13854.212184 C =13929.669522
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.495 5.495
3 C 0.031 3.969
4 C 0.336 3.664
5 N -0.540 5.540
6 C 0.086 3.914
7 C -0.171 4.171
8 C -0.015 4.015
9 C -0.149 4.149
10 C 0.170 3.830
11 N -0.663 5.663
12 C 0.526 3.474
13 O -0.544 6.544
14 C 0.085 3.915
15 H 0.129 0.871
16 N -0.831 5.831
17 C -0.120 4.120
18 C -0.006 4.006
19 C -0.535 4.535
20 H 0.025 0.975
21 C 0.000 4.000
22 N -0.953 5.953
23 Si 0.955 3.045
24 H -0.264 1.264
25 H -0.292 1.292
26 H -0.236 1.236
27 C -0.139 4.139
28 C -0.041 4.041
29 C -0.118 4.118
30 H 0.032 0.968
31 H 0.103 0.897
32 H 0.065 0.935
33 H 0.062 0.938
34 H 0.102 0.898
35 H 0.034 0.966
36 H 0.175 0.825
37 H 0.146 0.854
38 H 0.121 0.879
39 H 0.430 0.570
40 H 0.357 0.643
41 H 0.345 0.655
42 H 0.066 0.934
43 H 0.042 0.958
44 H 0.026 0.974
45 H 0.034 0.966
46 H 0.266 0.734
47 H 0.166 0.834
48 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.391 16.497 -9.630 29.432
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 N -0.218 5.218
3 C -0.115 4.115
4 C 0.093 3.907
5 N -0.253 5.253
6 C -0.058 4.058
7 C -0.191 4.191
8 C -0.021 4.021
9 C -0.170 4.170
10 C 0.074 3.926
11 N -0.309 5.309
12 C 0.314 3.686
13 O -0.420 6.420
14 C -0.030 4.030
15 H 0.147 0.853
16 N -0.363 5.363
17 C -0.160 4.160
18 C -0.044 4.044
19 C -0.573 4.573
20 H 0.043 0.957
21 C -0.197 4.197
22 N -0.594 5.594
23 Si 0.778 3.222
24 H -0.189 1.189
25 H -0.218 1.218
26 H -0.159 1.159
27 C -0.158 4.158
28 C -0.061 4.061
29 C -0.122 4.122
30 H 0.050 0.950
31 H 0.121 0.879
32 H 0.084 0.916
33 H 0.080 0.920
34 H 0.120 0.880
35 H 0.053 0.947
36 H 0.192 0.808
37 H 0.164 0.836
38 H 0.139 0.861
39 H 0.270 0.730
40 H 0.173 0.827
41 H 0.159 0.841
42 H 0.084 0.916
43 H 0.061 0.939
44 H 0.045 0.955
45 H 0.052 0.948
46 H 0.074 0.926
47 H 0.184 0.816
48 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges -23.713 17.043 -9.585 30.735
hybrid contribution 2.141 -1.090 1.334 2.748
sum -21.572 15.954 -8.251 28.071
Atomic orbital electron populations
1.22472 0.83894 1.02963 1.02305 1.60043 1.10239 1.15717 1.35771
1.22442 1.00318 0.86202 1.02579 1.20174 0.91774 0.90755 0.87947
1.67586 1.22838 1.34915 0.99914 1.22259 0.94077 0.91940 0.97478
1.22071 1.01403 0.98484 0.97153 1.18147 0.96037 0.94097 0.93830
1.21011 1.02830 0.96105 0.97095 1.18031 0.93917 0.86642 0.94025
1.43518 1.45199 1.12771 1.29453 1.21073 0.82382 0.84254 0.80902
1.90676 1.36891 1.80788 1.33620 1.21436 0.90160 0.89302 1.02143
0.85320 1.58761 1.55705 1.04822 1.16985 1.22037 0.93665 1.00261
0.99994 1.19510 0.92857 0.94892 0.97119 1.21439 0.96262 1.02746
1.36804 0.95658 1.26113 0.94470 1.03029 0.96056 1.70085 1.03897
1.37470 1.47941 0.85593 0.79955 0.77838 0.78847 1.18906 1.21813
1.15903 1.21069 0.99566 0.96448 0.98727 1.21059 0.94557 0.94262
0.96242 1.18725 1.02050 0.96553 0.94862 0.94969 0.87867 0.91633
0.91958 0.87962 0.94736 0.80841 0.83576 0.86138 0.73019 0.82708
0.84132 0.91551 0.93927 0.95532 0.94808 0.92570 0.81639 0.81510
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.40 9.47 127.69 1.21 1.61 16
2 N -0.49 -8.09 4.16 -750.54 -3.12 -11.21 16
3 C 0.03 0.42 9.38 127.69 1.20 1.62 16
4 C 0.34 7.30 5.36 133.89 0.72 8.02 16
5 N -0.54 -12.50 9.59 -193.35 -1.85 -14.36 16
6 C 0.09 1.85 11.06 84.05 0.93 2.78 16
7 C -0.17 -3.99 9.87 22.42 0.22 -3.77 16
8 C -0.02 -0.39 5.74 -21.30 -0.12 -0.52 16
9 C -0.15 -4.16 8.42 22.63 0.19 -3.97 16
10 C 0.17 4.02 6.25 38.22 0.24 4.26 16
11 N -0.66 -14.65 5.32 -303.52 -1.61 -16.27 16
12 C 0.53 14.91 6.79 87.66 0.60 15.51 16
13 O -0.54 -19.13 14.02 -3.06 -0.04 -19.18 16
14 C 0.08 2.31 3.21 44.17 0.14 2.45 16
15 H 0.13 2.82 8.14 -2.39 -0.02 2.81 16
16 N -0.83 -23.39 8.94 -171.80 -1.54 -24.92 16
17 C -0.12 -4.10 4.78 30.59 0.15 -3.96 16
18 C -0.01 -0.26 3.81 29.85 0.11 -0.15 16
19 C -0.53 -29.27 9.66 25.60 0.25 -29.02 16
20 H 0.03 1.56 7.99 -2.91 -0.02 1.54 16
21 C 0.00 0.00 5.47 84.65 0.46 0.46 16
22 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16
23 Si 0.95 41.53 27.47 68.60 1.88 43.42 16
24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16
25 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16
26 H -0.24 -9.09 6.54 99.48 0.65 -8.43 16
27 C -0.14 -2.44 9.86 22.18 0.22 -2.22 16
28 C -0.04 -0.74 9.54 22.24 0.21 -0.53 16
29 C -0.12 -2.71 5.76 -21.20 -0.12 -2.83 16
30 H 0.03 0.50 7.94 -2.38 -0.02 0.48 16
31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16
32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
33 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16
34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16
35 H 0.03 0.53 7.97 -2.38 -0.02 0.51 16
36 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16
37 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16
38 H 0.12 3.83 6.50 -2.91 -0.02 3.82 16
39 H 0.43 6.58 8.82 -92.71 -0.82 5.76 16
40 H 0.36 9.49 7.55 -89.69 -0.68 8.81 16
41 H 0.35 10.32 8.58 -89.69 -0.77 9.55 16
42 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16
43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16
44 H 0.03 1.05 5.93 -2.38 -0.01 1.03 16
45 H 0.03 1.28 7.57 -2.38 -0.02 1.26 16
46 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16
47 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16
48 H 0.17 2.22 7.59 -2.91 -0.02 2.20 16
Total: -1.00 -74.39 394.51 -0.70 -75.09
By element:
Atomic # 1 Polarization: 37.34 SS G_CDS: -1.31 Total: 36.03 kcal
Atomic # 6 Polarization: -16.84 SS G_CDS: 6.60 Total: -10.25 kcal
Atomic # 7 Polarization: -117.28 SS G_CDS: -7.83 Total: -125.11 kcal
Atomic # 8 Polarization: -19.13 SS G_CDS: -0.04 Total: -19.18 kcal
Atomic # 14 Polarization: 41.53 SS G_CDS: 1.88 Total: 43.42 kcal
Total: -74.39 -0.70 -75.09 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001578429600.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.732 kcal
(2) G-P(sol) polarization free energy of solvation -74.392 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.093 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.24 seconds