Wall clock time and date at job start Sat Apr 11 2020 06:44:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.35038 * 126.39969 * 2 1
4 4 N 1.30502 * 108.70156 * 180.26885 * 3 2 1
5 5 C 1.34126 * 109.25476 * 359.76883 * 4 3 2
6 6 C 1.34671 * 108.02168 * 359.97438 * 5 4 3
7 7 C 1.50698 * 126.59353 * 179.97438 * 6 5 4
8 8 C 1.53005 * 109.47043 * 85.02580 * 7 6 5
9 9 C 1.50698 * 109.47043 * 179.97438 * 8 7 6
10 10 O 1.21283 * 119.99906 * 0.02562 * 9 8 7
11 11 N 1.34776 * 120.00058 * 180.02562 * 9 8 7
12 12 C 1.46502 * 120.00112 * 179.97438 * 11 9 8
13 13 C 1.52996 * 109.47167 * 179.97438 * 12 11 9
14 14 H 1.09004 * 109.46658 * 65.00069 * 13 12 11
15 15 N 1.46506 * 109.47286 * 305.00554 * 13 12 11
16 16 C 1.36931 * 119.99939 * 154.99859 * 15 13 12
17 17 H 1.08000 * 120.00644 * 359.97438 * 16 15 13
18 18 C 1.38815 * 119.99715 * 179.97438 * 16 15 13
19 19 N 1.31621 * 119.99673 * 179.72262 * 18 16 15
20 20 Si 1.86795 * 120.00115 * 0.02562 * 18 16 15
21 21 H 1.48502 * 109.47274 * 89.99913 * 20 18 16
22 22 H 1.48505 * 109.47015 * 209.99478 * 20 18 16
23 23 H 1.48498 * 109.47362 * 329.99904 * 20 18 16
24 24 C 1.50695 * 109.47337 * 185.00303 * 13 12 11
25 25 C 1.38231 * 120.00281 * 79.72497 * 24 13 12
26 26 C 1.38234 * 119.99914 * 179.81075 * 25 24 13
27 27 C 1.38233 * 120.00183 * 0.40115 * 26 25 24
28 28 C 1.38228 * 119.99980 * 359.85444 * 27 26 25
29 29 C 1.38234 * 119.99978 * 359.95860 * 28 27 26
30 30 H 1.08994 * 109.47230 * 270.12188 * 1 2 3
31 31 H 1.09006 * 109.47130 * 30.12128 * 1 2 3
32 32 H 1.08998 * 109.47544 * 150.11744 * 1 2 3
33 33 H 1.08004 * 125.65085 * 0.06867 * 3 2 1
34 34 H 1.08003 * 125.99232 * 180.02562 * 5 4 3
35 35 H 1.09005 * 109.46917 * 325.02669 * 7 6 5
36 36 H 1.09005 * 109.46958 * 205.02698 * 7 6 5
37 37 H 1.08997 * 109.46857 * 60.00213 * 8 7 6
38 38 H 1.08994 * 109.46654 * 300.00121 * 8 7 6
39 39 H 0.96997 * 119.99690 * 359.97438 * 11 9 8
40 40 H 1.09005 * 109.46839 * 60.00083 * 12 11 9
41 41 H 1.08995 * 109.46942 * 300.00129 * 12 11 9
42 42 H 0.97000 * 119.99307 * 334.99653 * 15 13 12
43 43 H 0.97000 * 120.00043 * 180.02562 * 19 18 16
44 44 H 1.08000 * 119.99526 * 0.02562 * 25 24 13
45 45 H 1.08003 * 119.99528 * 180.23570 * 26 25 24
46 46 H 1.07995 * 119.99817 * 179.83691 * 27 26 25
47 47 H 1.07998 * 120.00292 * 179.97438 * 28 27 26
48 48 H 1.08000 * 120.00271 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2663 1.0869 0.0000
4 7 3.5096 0.6902 -0.0058
5 6 3.5460 -0.6506 -0.0046
6 6 2.2772 -1.1018 0.0028
7 6 1.8362 -2.5429 0.0062
8 6 1.8146 -3.0662 1.4438
9 6 1.3731 -4.5070 1.4473
10 8 1.1027 -5.0609 0.4028
11 7 1.2786 -5.1801 2.6111
12 6 0.8488 -6.5807 2.6146
13 6 0.8273 -7.1040 4.0521
14 1 0.0686 -6.5681 4.6225
15 7 2.1400 -6.8942 4.6679
16 6 2.2490 -6.7899 6.0288
17 1 1.3673 -6.8618 6.6484
18 6 3.4929 -6.5916 6.6123
19 7 3.5969 -6.4859 7.9201
20 14 5.0178 -6.4665 5.5408
21 1 5.2440 -5.0476 5.1654
22 1 6.1940 -6.9730 6.2927
23 1 4.8279 -7.2792 4.3126
24 6 0.5048 -8.5760 4.0460
25 6 1.4922 -9.4988 3.7558
26 6 1.1972 -10.8493 3.7541
27 6 -0.0872 -11.2766 4.0345
28 6 -1.0759 -10.3536 4.3195
29 6 -0.7800 -9.0033 4.3250
30 1 -0.3633 0.0022 1.0276
31 1 -0.3634 0.8889 -0.5157
32 1 -0.3634 -0.8910 -0.5120
33 1 1.9335 2.1144 0.0011
34 1 4.4368 -1.2613 -0.0080
35 1 2.5319 -3.1371 -0.5864
36 1 0.8370 -2.6181 -0.4229
37 1 1.1190 -2.4720 2.0364
38 1 2.8138 -2.9909 1.8728
39 1 1.4951 -4.7372 3.4465
40 1 1.5440 -7.1755 2.0221
41 1 -0.1504 -6.6551 2.1854
42 1 2.9318 -6.8293 4.1114
43 1 4.4660 -6.3470 8.3278
44 1 2.4950 -9.1647 3.5338
45 1 1.9697 -11.5704 3.5310
46 1 -0.3182 -12.3315 4.0305
47 1 -2.0794 -10.6873 4.5381
48 1 -1.5523 -8.2821 4.5481
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001664597756.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:49
Heat of formation + Delta-G solvation = 59.632380 kcal
Electronic energy + Delta-G solvation = -28797.981744 eV
Core-core repulsion = 24854.062437 eV
Total energy + Delta-G solvation = -3943.919307 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.27397 -39.71274 -38.88667 -36.17037 -34.43991 -33.73978 -33.70527 -32.07950
-30.54336 -30.05804 -29.33367 -27.62738 -27.23530 -24.79060 -23.31927 -22.67238
-21.96907 -21.61432 -20.32900 -20.07707 -19.82737 -17.96876 -17.43421 -16.81398
-16.34262 -15.99087 -15.88118 -15.62921 -15.23317 -14.72723 -14.63223 -14.27889
-14.13301 -13.77009 -13.63828 -13.29372 -13.21849 -13.06921 -13.03271 -12.93644
-12.82938 -12.61945 -12.46056 -12.22521 -12.17624 -11.46574 -11.29909 -11.09456
-10.93114 -10.82173 -10.60140 -10.24643 -10.10713 -9.84387 -9.75263 -9.70898
-9.15160 -8.86950 -8.50676 -8.49761 -8.29276 -7.48033 -5.89419 -3.28449
1.76684 1.81557 1.83263 2.54639 2.73885 3.00165 3.27154 3.30085
3.36713 3.39599 4.20488 4.38172 4.45396 4.46637 4.53243 4.73025
4.78606 4.82768 4.98994 5.02570 5.07680 5.24510 5.26063 5.30898
5.33161 5.36524 5.41523 5.49425 5.51608 5.64340 5.65908 5.69055
5.87266 5.92341 5.97510 6.04136 6.20952 6.27728 6.38030 6.50460
6.57430 6.62971 6.85147 6.90542 6.97700 7.14496 7.42532 7.70126
7.83441 7.90227 8.27965 8.35117 9.03904 9.75596 9.92893 11.28205
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.010477 B = 0.002770 C = 0.002356
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2671.805514 B =10104.807656 C =11883.879474
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.460 5.460
3 C 0.175 3.825
4 N -0.494 5.494
5 C -0.024 4.024
6 C -0.022 4.022
7 C -0.025 4.025
8 C -0.137 4.137
9 C 0.511 3.489
10 O -0.552 6.552
11 N -0.717 5.717
12 C 0.118 3.882
13 C 0.204 3.796
14 H 0.074 0.926
15 N -0.739 5.739
16 C -0.249 4.249
17 H 0.092 0.908
18 C 0.013 3.987
19 N -0.927 5.927
20 Si 0.879 3.121
21 H -0.282 1.282
22 H -0.290 1.290
23 H -0.277 1.277
24 C -0.081 4.081
25 C -0.088 4.088
26 C -0.126 4.126
27 C -0.132 4.132
28 C -0.127 4.127
29 C -0.117 4.117
30 H 0.078 0.922
31 H 0.087 0.913
32 H 0.087 0.913
33 H 0.203 0.797
34 H 0.169 0.831
35 H 0.095 0.905
36 H 0.076 0.924
37 H 0.090 0.910
38 H 0.100 0.900
39 H 0.411 0.589
40 H 0.066 0.934
41 H 0.070 0.930
42 H 0.363 0.637
43 H 0.261 0.739
44 H 0.117 0.883
45 H 0.114 0.886
46 H 0.112 0.888
47 H 0.114 0.886
48 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.633 6.809 -14.937 19.033
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.143 5.143
3 C -0.107 4.107
4 N -0.211 5.211
5 C -0.172 4.172
6 C -0.136 4.136
7 C -0.064 4.064
8 C -0.177 4.177
9 C 0.297 3.703
10 O -0.431 6.431
11 N -0.369 5.369
12 C -0.007 4.007
13 C 0.094 3.906
14 H 0.092 0.908
15 N -0.381 5.381
16 C -0.379 4.379
17 H 0.110 0.890
18 C -0.183 4.183
19 N -0.574 5.574
20 Si 0.709 3.291
21 H -0.209 1.209
22 H -0.216 1.216
23 H -0.204 1.204
24 C -0.084 4.084
25 C -0.106 4.106
26 C -0.144 4.144
27 C -0.150 4.150
28 C -0.145 4.145
29 C -0.135 4.135
30 H 0.097 0.903
31 H 0.106 0.894
32 H 0.105 0.895
33 H 0.220 0.780
34 H 0.187 0.813
35 H 0.113 0.887
36 H 0.094 0.906
37 H 0.109 0.891
38 H 0.118 0.882
39 H 0.248 0.752
40 H 0.084 0.916
41 H 0.089 0.911
42 H 0.197 0.803
43 H 0.071 0.929
44 H 0.135 0.865
45 H 0.132 0.868
46 H 0.131 0.869
47 H 0.132 0.868
48 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -9.319 6.979 -15.397 19.304
hybrid contribution 0.593 -0.370 0.072 0.703
sum -8.726 6.608 -15.326 18.833
Atomic orbital electron populations
1.22068 0.76710 1.04736 1.03841 1.45323 1.07574 1.06774 1.54635
1.24918 0.85702 0.93392 1.06649 1.70278 1.19412 1.12103 1.19340
1.22121 0.95869 0.91057 1.08131 1.21296 0.91299 0.89768 1.11252
1.19725 1.03139 0.87426 0.96099 1.21652 1.04337 0.93118 0.98588
1.20561 0.77446 0.88590 0.83696 1.90684 1.50449 1.70349 1.31642
1.46044 1.68079 1.13153 1.09646 1.21631 1.00194 0.81349 0.97528
1.19437 0.90197 0.89907 0.91070 0.90827 1.42830 1.02564 1.87609
1.05091 1.19006 0.95204 1.42742 0.80919 0.89050 1.24642 0.96987
1.01432 0.95257 1.69688 1.23890 1.55529 1.08289 0.86661 0.84420
0.78008 0.80039 1.20872 1.21635 1.20367 1.20842 0.92918 0.97766
0.96922 1.20927 0.99147 0.92457 0.98106 1.21089 0.96450 0.95875
1.01025 1.20993 0.93605 0.98925 1.01499 1.21004 0.98854 0.93412
1.01257 1.21003 0.96258 0.95576 1.00708 0.90316 0.89409 0.89461
0.78000 0.81350 0.88691 0.90554 0.89141 0.88164 0.75248 0.91598
0.91132 0.80297 0.92881 0.86451 0.86805 0.86944 0.86821 0.86577
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.35 11.00 59.85 0.66 1.01 16
2 N -0.46 -4.11 3.15 -121.37 -0.38 -4.49 16
3 C 0.18 1.71 12.56 -90.38 -1.14 0.57 16
4 N -0.49 -6.41 11.25 -14.66 -0.16 -6.57 16
5 C -0.02 -0.29 11.79 -17.81 -0.21 -0.50 16
6 C -0.02 -0.23 6.21 -81.60 -0.51 -0.74 16
7 C -0.02 -0.25 4.84 -27.88 -0.13 -0.39 16
8 C -0.14 -1.43 5.68 -27.88 -0.16 -1.59 16
9 C 0.51 6.96 7.83 -10.99 -0.09 6.87 16
10 O -0.55 -9.13 15.98 5.56 0.09 -9.04 16
11 N -0.72 -10.06 5.39 -60.30 -0.32 -10.39 16
12 C 0.12 1.76 5.21 -4.04 -0.02 1.74 16
13 C 0.20 3.47 2.64 -69.08 -0.18 3.29 16
14 H 0.07 1.26 7.94 -51.93 -0.41 0.85 16
15 N -0.74 -15.29 3.62 -54.55 -0.20 -15.49 16
16 C -0.25 -6.38 10.40 -15.06 -0.16 -6.54 16
17 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16
18 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16
19 N -0.93 -27.73 13.97 55.49 0.78 -26.95 16
20 Si 0.88 20.84 27.74 -169.99 -4.71 16.13 16
21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
23 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16
24 C -0.08 -1.38 4.92 -104.63 -0.51 -1.89 16
25 C -0.09 -1.53 9.32 -39.59 -0.37 -1.90 16
26 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 16
27 C -0.13 -1.87 10.05 -39.59 -0.40 -2.26 16
28 C -0.13 -1.79 10.05 -39.59 -0.40 -2.19 16
29 C -0.12 -1.79 9.67 -39.58 -0.38 -2.17 16
30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16
32 H 0.09 0.42 7.11 -51.93 -0.37 0.05 16
33 H 0.20 1.18 8.06 -52.48 -0.42 0.76 16
34 H 0.17 1.82 8.06 -52.48 -0.42 1.39 16
35 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16
36 H 0.08 0.74 7.04 -51.93 -0.37 0.38 16
37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16
39 H 0.41 5.74 8.14 -40.82 -0.33 5.41 16
40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
42 H 0.36 7.57 5.66 -40.82 -0.23 7.34 16
43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
44 H 0.12 2.12 7.73 -52.49 -0.41 1.71 16
45 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16
46 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16
47 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16
48 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16
LS Contribution 404.82 15.07 6.10 6.10
Total: -1.00 -34.01 404.82 -10.51 -44.52
By element:
Atomic # 1 Polarization: 22.15 SS G_CDS: -7.20 Total: 14.95 kcal
Atomic # 6 Polarization: -4.26 SS G_CDS: -4.49 Total: -8.75 kcal
Atomic # 7 Polarization: -63.60 SS G_CDS: -0.29 Total: -63.89 kcal
Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal
Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.13 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -34.01 -10.51 -44.52 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001664597756.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.148 kcal
(2) G-P(sol) polarization free energy of solvation -34.006 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.142 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.632 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds