Wall clock time and date at job start Sat Apr 11 2020 06:44:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.35038 * 126.39969 * 2 1
4 4 N 1.30502 * 108.70156 * 180.26885 * 3 2 1
5 5 C 1.34126 * 109.25476 * 359.76883 * 4 3 2
6 6 C 1.34671 * 108.02168 * 359.97438 * 5 4 3
7 7 C 1.50698 * 126.59353 * 179.97438 * 6 5 4
8 8 C 1.53005 * 109.47043 * 85.02580 * 7 6 5
9 9 C 1.50698 * 109.47043 * 179.97438 * 8 7 6
10 10 O 1.21283 * 119.99906 * 0.02562 * 9 8 7
11 11 N 1.34776 * 120.00058 * 180.02562 * 9 8 7
12 12 C 1.46502 * 120.00112 * 179.97438 * 11 9 8
13 13 C 1.52996 * 109.47167 * 179.97438 * 12 11 9
14 14 H 1.09004 * 109.46658 * 65.00069 * 13 12 11
15 15 N 1.46506 * 109.47286 * 305.00554 * 13 12 11
16 16 C 1.36931 * 119.99939 * 154.99859 * 15 13 12
17 17 H 1.08000 * 120.00644 * 359.97438 * 16 15 13
18 18 C 1.38815 * 119.99715 * 179.97438 * 16 15 13
19 19 N 1.31621 * 119.99673 * 179.72262 * 18 16 15
20 20 Si 1.86795 * 120.00115 * 0.02562 * 18 16 15
21 21 H 1.48502 * 109.47274 * 89.99913 * 20 18 16
22 22 H 1.48505 * 109.47015 * 209.99478 * 20 18 16
23 23 H 1.48498 * 109.47362 * 329.99904 * 20 18 16
24 24 C 1.50695 * 109.47337 * 185.00303 * 13 12 11
25 25 C 1.38231 * 120.00281 * 79.72497 * 24 13 12
26 26 C 1.38234 * 119.99914 * 179.81075 * 25 24 13
27 27 C 1.38233 * 120.00183 * 0.40115 * 26 25 24
28 28 C 1.38228 * 119.99980 * 359.85444 * 27 26 25
29 29 C 1.38234 * 119.99978 * 359.95860 * 28 27 26
30 30 H 1.08994 * 109.47230 * 270.12188 * 1 2 3
31 31 H 1.09006 * 109.47130 * 30.12128 * 1 2 3
32 32 H 1.08998 * 109.47544 * 150.11744 * 1 2 3
33 33 H 1.08004 * 125.65085 * 0.06867 * 3 2 1
34 34 H 1.08003 * 125.99232 * 180.02562 * 5 4 3
35 35 H 1.09005 * 109.46917 * 325.02669 * 7 6 5
36 36 H 1.09005 * 109.46958 * 205.02698 * 7 6 5
37 37 H 1.08997 * 109.46857 * 60.00213 * 8 7 6
38 38 H 1.08994 * 109.46654 * 300.00121 * 8 7 6
39 39 H 0.96997 * 119.99690 * 359.97438 * 11 9 8
40 40 H 1.09005 * 109.46839 * 60.00083 * 12 11 9
41 41 H 1.08995 * 109.46942 * 300.00129 * 12 11 9
42 42 H 0.97000 * 119.99307 * 334.99653 * 15 13 12
43 43 H 0.97000 * 120.00043 * 180.02562 * 19 18 16
44 44 H 1.08000 * 119.99526 * 0.02562 * 25 24 13
45 45 H 1.08003 * 119.99528 * 180.23570 * 26 25 24
46 46 H 1.07995 * 119.99817 * 179.83691 * 27 26 25
47 47 H 1.07998 * 120.00292 * 179.97438 * 28 27 26
48 48 H 1.08000 * 120.00271 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2663 1.0869 0.0000
4 7 3.5096 0.6902 -0.0058
5 6 3.5460 -0.6506 -0.0046
6 6 2.2772 -1.1018 0.0028
7 6 1.8362 -2.5429 0.0062
8 6 1.8146 -3.0662 1.4438
9 6 1.3731 -4.5070 1.4473
10 8 1.1027 -5.0609 0.4028
11 7 1.2786 -5.1801 2.6111
12 6 0.8488 -6.5807 2.6146
13 6 0.8273 -7.1040 4.0521
14 1 0.0686 -6.5681 4.6225
15 7 2.1400 -6.8942 4.6679
16 6 2.2490 -6.7899 6.0288
17 1 1.3673 -6.8618 6.6484
18 6 3.4929 -6.5916 6.6123
19 7 3.5969 -6.4859 7.9201
20 14 5.0178 -6.4665 5.5408
21 1 5.2440 -5.0476 5.1654
22 1 6.1940 -6.9730 6.2927
23 1 4.8279 -7.2792 4.3126
24 6 0.5048 -8.5760 4.0460
25 6 1.4922 -9.4988 3.7558
26 6 1.1972 -10.8493 3.7541
27 6 -0.0872 -11.2766 4.0345
28 6 -1.0759 -10.3536 4.3195
29 6 -0.7800 -9.0033 4.3250
30 1 -0.3633 0.0022 1.0276
31 1 -0.3634 0.8889 -0.5157
32 1 -0.3634 -0.8910 -0.5120
33 1 1.9335 2.1144 0.0011
34 1 4.4368 -1.2613 -0.0080
35 1 2.5319 -3.1371 -0.5864
36 1 0.8370 -2.6181 -0.4229
37 1 1.1190 -2.4720 2.0364
38 1 2.8138 -2.9909 1.8728
39 1 1.4951 -4.7372 3.4465
40 1 1.5440 -7.1755 2.0221
41 1 -0.1504 -6.6551 2.1854
42 1 2.9318 -6.8293 4.1114
43 1 4.4660 -6.3470 8.3278
44 1 2.4950 -9.1647 3.5338
45 1 1.9697 -11.5704 3.5310
46 1 -0.3182 -12.3315 4.0305
47 1 -2.0794 -10.6873 4.5381
48 1 -1.5523 -8.2821 4.5481
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001664597756.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:48
Heat of formation + Delta-G solvation = 39.727580 kcal
Electronic energy + Delta-G solvation = -28798.844881 eV
Core-core repulsion = 24854.062437 eV
Total energy + Delta-G solvation = -3944.782444 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-43.02092 -40.89260 -40.08996 -37.56077 -35.30090 -35.15444 -34.50358 -33.74166
-31.88431 -31.53622 -30.27636 -28.81857 -27.76882 -25.96172 -24.89679 -23.92495
-23.20145 -22.36406 -21.54036 -21.22498 -20.68268 -19.83304 -18.33644 -17.74467
-17.55740 -17.08077 -16.99537 -16.59141 -16.48786 -15.99660 -15.84678 -15.49058
-15.29453 -14.94348 -14.70412 -14.50609 -14.33690 -14.22635 -14.09844 -13.85474
-13.81637 -13.71391 -13.52728 -13.34211 -13.03886 -12.97212 -12.86729 -12.45906
-12.23958 -12.15084 -11.99275 -11.81098 -11.70704 -11.09998 -10.95756 -10.87903
-10.48481 -10.06761 -9.69547 -9.60466 -9.31340 -9.30375 -8.00811 -5.35541
0.56842 0.62900 1.06159 1.38027 1.39169 1.46265 1.64443 1.92750
2.16578 2.31300 2.47482 2.99267 3.31164 3.49022 3.60813 3.89730
3.95277 3.96710 3.99180 4.03025 4.11053 4.13926 4.23110 4.33124
4.33934 4.38784 4.43576 4.48287 4.57143 4.69646 4.69716 4.72521
4.77092 4.81921 4.93196 5.00286 5.06690 5.20717 5.28095 5.44605
5.45592 5.68326 5.71016 5.77113 5.78440 5.88302 6.22345 6.24911
6.32669 6.56868 7.06529 7.13153 7.23499 7.79104 7.98556 9.20399
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.010477 B = 0.002770 C = 0.002356
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2671.805514 B =10104.807656 C =11883.879474
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.062 3.938
2 N -0.458 5.458
3 C 0.179 3.821
4 N -0.538 5.538
5 C -0.051 4.051
6 C -0.023 4.023
7 C -0.015 4.015
8 C -0.127 4.127
9 C 0.513 3.487
10 O -0.581 6.581
11 N -0.717 5.717
12 C 0.130 3.870
13 C 0.209 3.791
14 H 0.073 0.927
15 N -0.736 5.736
16 C -0.217 4.217
17 H 0.061 0.939
18 C -0.051 4.051
19 N -0.980 5.980
20 Si 0.940 3.060
21 H -0.274 1.274
22 H -0.304 1.304
23 H -0.259 1.259
24 C -0.102 4.102
25 C -0.114 4.114
26 C -0.136 4.136
27 C -0.131 4.131
28 C -0.127 4.127
29 C -0.126 4.126
30 H 0.089 0.911
31 H 0.114 0.886
32 H 0.090 0.910
33 H 0.238 0.762
34 H 0.168 0.832
35 H 0.085 0.915
36 H 0.081 0.919
37 H 0.109 0.891
38 H 0.103 0.897
39 H 0.412 0.588
40 H 0.056 0.944
41 H 0.082 0.918
42 H 0.365 0.635
43 H 0.256 0.744
44 H 0.102 0.898
45 H 0.131 0.869
46 H 0.143 0.857
47 H 0.145 0.855
48 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.483 6.841 -16.435 21.184
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 N -0.140 5.140
3 C -0.103 4.103
4 N -0.257 5.257
5 C -0.199 4.199
6 C -0.138 4.138
7 C -0.054 4.054
8 C -0.167 4.167
9 C 0.301 3.699
10 O -0.462 6.462
11 N -0.369 5.369
12 C 0.005 3.995
13 C 0.100 3.900
14 H 0.091 0.909
15 N -0.379 5.379
16 C -0.348 4.348
17 H 0.079 0.921
18 C -0.243 4.243
19 N -0.631 5.631
20 Si 0.769 3.231
21 H -0.199 1.199
22 H -0.232 1.232
23 H -0.184 1.184
24 C -0.106 4.106
25 C -0.132 4.132
26 C -0.154 4.154
27 C -0.149 4.149
28 C -0.144 4.144
29 C -0.145 4.145
30 H 0.107 0.893
31 H 0.132 0.868
32 H 0.108 0.892
33 H 0.254 0.746
34 H 0.185 0.815
35 H 0.104 0.896
36 H 0.100 0.900
37 H 0.127 0.873
38 H 0.121 0.879
39 H 0.249 0.751
40 H 0.074 0.926
41 H 0.100 0.900
42 H 0.199 0.801
43 H 0.065 0.935
44 H 0.120 0.880
45 H 0.149 0.851
46 H 0.161 0.839
47 H 0.163 0.837
48 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -11.225 7.004 -16.952 21.504
hybrid contribution 0.981 -0.436 0.510 1.188
sum -10.244 6.568 -16.442 20.455
Atomic orbital electron populations
1.22378 0.74276 1.06261 1.05010 1.45545 1.09008 1.05948 1.53521
1.25601 0.85055 0.94876 1.04749 1.70232 1.21563 1.12573 1.21324
1.22300 0.96785 0.91307 1.09483 1.21250 0.91165 0.90294 1.11130
1.19602 1.03127 0.87055 0.95631 1.21618 1.04785 0.91050 0.99263
1.21019 0.76477 0.89498 0.82865 1.90673 1.51761 1.71222 1.32530
1.46060 1.68094 1.12766 1.09987 1.21442 1.00575 0.81729 0.95761
1.19513 0.88110 0.90481 0.91904 0.90887 1.42718 1.04268 1.87663
1.03252 1.18891 0.93771 1.39458 0.82673 0.92123 1.25286 1.00026
1.02767 0.96206 1.69855 1.24179 1.58648 1.10384 0.85643 0.80173
0.78506 0.78782 1.19947 1.23164 1.18410 1.20799 0.94017 0.97184
0.98568 1.20975 0.98674 0.93744 0.99847 1.21367 0.97831 0.95381
1.00808 1.21403 0.92880 1.00665 0.99978 1.21416 1.00397 0.92788
0.99842 1.21276 0.95921 0.96915 1.00395 0.89268 0.86785 0.89169
0.74560 0.81465 0.89635 0.90006 0.87277 0.87885 0.75099 0.92613
0.89978 0.80133 0.93503 0.87988 0.85135 0.83877 0.83714 0.84927
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.44 11.00 127.77 1.41 1.85 16
2 N -0.46 -7.25 3.15 -537.89 -1.70 -8.95 16
3 C 0.18 3.17 12.56 180.26 2.26 5.44 16
4 N -0.54 -13.73 11.25 -200.31 -2.25 -15.98 16
5 C -0.05 -1.24 11.79 83.52 0.98 -0.26 16
6 C -0.02 -0.46 6.21 40.95 0.25 -0.20 16
7 C -0.02 -0.29 4.84 29.85 0.14 -0.14 16
8 C -0.13 -2.47 5.68 29.85 0.17 -2.30 16
9 C 0.51 13.34 7.83 87.66 0.69 14.03 16
10 O -0.58 -18.64 15.98 -3.04 -0.05 -18.69 16
11 N -0.72 -19.32 5.39 -463.06 -2.49 -21.81 16
12 C 0.13 3.78 5.21 86.38 0.45 4.23 16
13 C 0.21 7.00 2.64 44.24 0.12 7.11 16
14 H 0.07 2.46 7.94 -2.38 -0.02 2.44 16
15 N -0.74 -30.33 3.62 -326.50 -1.18 -31.51 16
16 C -0.22 -11.26 10.40 84.04 0.87 -10.39 16
17 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16
18 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16
19 N -0.98 -60.32 13.97 21.65 0.30 -60.02 16
20 Si 0.94 43.54 27.74 68.60 1.90 45.45 16
21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
22 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16
23 H -0.26 -11.03 6.52 99.48 0.65 -10.38 16
24 C -0.10 -3.43 4.92 -19.87 -0.10 -3.52 16
25 C -0.11 -3.91 9.32 22.27 0.21 -3.70 16
26 C -0.14 -3.99 10.05 22.27 0.22 -3.76 16
27 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16
28 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16
29 C -0.13 -3.65 9.67 22.27 0.22 -3.44 16
30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16
31 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16
32 H 0.09 0.63 7.11 -2.39 -0.02 0.61 16
33 H 0.24 2.09 8.06 -2.91 -0.02 2.06 16
34 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16
35 H 0.09 1.79 8.10 -2.38 -0.02 1.77 16
36 H 0.08 1.46 7.04 -2.38 -0.02 1.44 16
37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16
38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
39 H 0.41 11.05 8.14 -92.71 -0.75 10.29 16
40 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16
41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
42 H 0.36 14.94 5.66 -92.71 -0.52 14.42 16
43 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16
44 H 0.10 3.71 7.73 -2.91 -0.02 3.69 16
45 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16
46 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16
47 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16
48 H 0.13 3.28 8.04 -2.91 -0.02 3.25 16
Total: -1.00 -75.29 404.82 2.98 -72.30
By element:
Atomic # 1 Polarization: 43.09 SS G_CDS: -0.36 Total: 42.72 kcal
Atomic # 6 Polarization: -12.33 SS G_CDS: 8.81 Total: -3.51 kcal
Atomic # 7 Polarization: -130.95 SS G_CDS: -7.32 Total: -138.27 kcal
Atomic # 8 Polarization: -18.64 SS G_CDS: -0.05 Total: -18.69 kcal
Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.45 kcal
Total: -75.29 2.98 -72.30 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001664597756.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.032 kcal
(2) G-P(sol) polarization free energy of solvation -75.288 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.744 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.304 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.728 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds