Wall clock time and date at job start Sat Apr 11 2020 06:45:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86803 * 119.99951 * 2 1
4 4 H 1.48500 * 109.46890 * 270.00379 * 3 2 1
5 5 H 1.48504 * 109.46888 * 30.00205 * 3 2 1
6 6 H 1.48501 * 109.47076 * 149.99972 * 3 2 1
7 7 C 1.38813 * 119.99885 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99664 * 0.02562 * 7 2 1
9 9 N 1.36934 * 119.99524 * 179.97438 * 7 2 1
10 10 C 1.46508 * 119.99664 * 180.02562 * 9 7 2
11 11 C 1.53001 * 109.47141 * 180.02562 * 10 9 7
12 12 C 1.52995 * 109.47134 * 180.02562 * 11 10 9
13 13 H 1.09001 * 109.49909 * 305.06434 * 12 11 10
14 14 C 1.53044 * 109.49648 * 65.15943 * 12 11 10
15 15 C 1.53042 * 109.53781 * 181.31395 * 14 12 11
16 16 C 1.53615 * 109.24449 * 298.51521 * 15 14 12
17 17 N 1.46931 * 108.54625 * 54.85426 * 16 15 14
18 18 C 1.34772 * 120.63201 * 126.36866 * 17 16 15
19 19 O 1.21277 * 120.00115 * 179.72461 * 18 17 16
20 20 C 1.50702 * 120.00018 * 359.72181 * 18 17 16
21 21 C 1.54342 * 110.82071 * 67.03110 * 20 18 17
22 22 C 1.51377 * 105.16903 * 144.57099 * 21 20 18
23 23 C 1.38491 * 130.39062 * 163.09333 * 22 21 20
24 24 C 1.38109 * 120.21541 * 180.12181 * 23 22 21
25 25 C 1.38245 * 119.93171 * 359.57713 * 24 23 22
26 26 C 1.38105 * 119.93682 * 0.20954 * 25 24 23
27 27 C 1.38215 * 109.75709 * 342.81172 * 22 21 20
28 28 C 1.51369 * 109.76229 * 359.97438 * 27 22 21
29 29 C 1.46925 * 118.73472 * 306.09457 * 17 16 15
30 30 H 0.97002 * 119.99667 * 359.97438 * 1 2 3
31 31 H 0.96996 * 120.00654 * 0.02562 * 9 7 2
32 32 H 1.09006 * 109.47005 * 60.00162 * 10 9 7
33 33 H 1.08997 * 109.46890 * 300.00470 * 10 9 7
34 34 H 1.08992 * 109.47130 * 60.00050 * 11 10 9
35 35 H 1.09006 * 109.46856 * 300.00038 * 11 10 9
36 36 H 1.08997 * 109.46494 * 301.33607 * 14 12 11
37 37 H 1.09004 * 109.45911 * 61.29822 * 14 12 11
38 38 H 1.09003 * 109.49529 * 58.59070 * 15 14 12
39 39 H 1.08999 * 109.50016 * 178.65238 * 15 14 12
40 40 H 1.08997 * 109.74338 * 295.11493 * 16 15 14
41 41 H 1.09001 * 109.66778 * 174.54618 * 16 15 14
42 42 H 1.09004 * 110.72682 * 303.40591 * 20 18 17
43 43 H 1.08992 * 110.30704 * 25.64713 * 21 20 18
44 44 H 1.09003 * 110.30230 * 263.49320 * 21 20 18
45 45 H 1.08003 * 119.89466 * 359.69705 * 23 22 21
46 46 H 1.08002 * 120.03075 * 179.76592 * 24 23 22
47 47 H 1.08004 * 120.02920 * 180.23388 * 25 24 23
48 48 H 1.08000 * 119.88959 * 179.97438 * 26 25 24
49 49 H 1.08999 * 110.30349 * 136.11272 * 28 27 22
50 50 H 1.08994 * 110.30440 * 258.26704 * 28 27 22
51 51 H 1.09008 * 109.58723 * 173.64343 * 29 17 16
52 52 H 1.08998 * 109.59060 * 293.92676 * 29 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 2.4976 2.0465 -1.4001
5 1 1.4476 2.6527 0.7001
6 1 3.5478 1.4402 0.7000
7 6 2.0103 -1.2022 0.0005
8 1 1.4702 -2.1374 0.0005
9 7 3.3796 -1.2021 0.0000
10 6 4.1122 -2.4709 0.0000
11 6 5.6164 -2.1913 0.0000
12 6 6.3814 -3.5163 -0.0006
13 1 6.0522 -4.1269 0.8401
14 6 6.1118 -4.2611 -1.3102
15 6 6.8504 -5.6014 -1.2980
16 6 8.3613 -5.3460 -1.1897
17 7 8.6103 -4.5095 -0.0076
18 6 9.4931 -4.8969 0.9341
19 8 9.6935 -4.1952 1.9028
20 6 10.2313 -6.2021 0.7836
21 6 11.2057 -6.1465 -0.4121
22 6 12.4051 -6.9648 0.0159
23 6 13.4296 -7.5162 -0.7354
24 6 14.4328 -8.2380 -0.1189
25 6 14.4198 -8.4036 1.2536
26 6 13.4014 -7.8508 2.0049
27 6 12.3921 -7.1304 1.3880
28 6 11.1836 -6.4341 1.9762
29 6 7.8829 -3.2399 0.1251
30 1 -0.4850 0.8401 0.0004
31 1 3.8647 -0.3621 -0.0004
32 1 3.8485 -3.0426 -0.8898
33 1 3.8491 -3.0422 0.8902
34 1 5.8797 -1.6198 0.8899
35 1 5.8797 -1.6197 -0.8900
36 1 5.0412 -4.4374 -1.4140
37 1 6.4637 -3.6602 -2.1488
38 1 6.5169 -6.1929 -0.4453
39 1 6.6388 -6.1418 -2.2207
40 1 8.7125 -4.8297 -2.0831
41 1 8.8871 -6.2948 -1.0831
42 1 9.5316 -7.0312 0.6789
43 1 11.5021 -5.1166 -0.6110
44 1 10.7443 -6.5856 -1.2967
45 1 13.4404 -7.3873 -1.8076
46 1 15.2282 -8.6699 -0.7080
47 1 15.2056 -8.9645 1.7377
48 1 13.3917 -7.9811 3.0770
49 1 10.7067 -7.0698 2.7222
50 1 11.4743 -5.4819 2.4197
51 1 8.0928 -2.7986 1.0996
52 1 8.1976 -2.5544 -0.6617
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001269770814.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:52
Heat of formation + Delta-G solvation = -30.237873 kcal
Electronic energy + Delta-G solvation = -29224.079603 eV
Core-core repulsion = 25379.803573 eV
Total energy + Delta-G solvation = -3844.276030 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-41.88101 -40.51895 -38.97200 -37.08368 -36.46720 -34.98791 -33.37732 -32.61326
-32.32360 -30.62752 -29.24170 -28.22952 -26.65926 -25.75665 -24.21431 -23.33877
-22.88116 -22.11020 -21.84376 -21.04374 -19.88913 -19.55006 -18.39436 -17.28947
-16.96637 -16.93355 -16.61528 -16.12883 -15.96781 -15.82621 -15.59994 -15.27480
-15.15571 -14.87857 -14.53086 -14.36185 -14.26462 -14.13650 -14.03852 -13.80296
-13.64004 -13.53002 -13.20667 -13.07889 -12.95781 -12.44065 -12.36722 -12.25537
-12.16868 -12.13570 -12.08332 -11.95173 -11.83463 -11.68887 -11.65502 -11.50826
-11.27312 -10.95491 -10.80596 -9.71006 -9.64723 -9.43060 -9.30559 -8.04824
-5.38613 0.43532 0.48590 1.36833 1.40467 1.47990 1.53412 1.93352
2.47013 2.84448 3.24719 3.26445 3.36129 3.54285 3.67731 3.82382
3.87797 3.96632 4.02071 4.09461 4.11043 4.17931 4.22668 4.30670
4.34813 4.41710 4.48491 4.55117 4.62345 4.65225 4.66709 4.71717
4.75300 4.81120 4.84788 4.86602 4.89288 4.91333 5.02068 5.04977
5.15195 5.18314 5.22722 5.24433 5.31463 5.43829 5.50889 5.54167
5.56120 5.63502 5.71445 5.73432 6.12265 6.19376 6.38774 7.06019
7.10867 7.82500 8.01937 9.16655
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.031412 B = 0.001771 C = 0.001736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 891.168432 B =15806.680888 C =16127.015582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.983 5.983
2 C -0.065 4.065
3 Si 0.958 3.042
4 H -0.274 1.274
5 H -0.295 1.295
6 H -0.254 1.254
7 C -0.239 4.239
8 H 0.055 0.945
9 N -0.761 5.761
10 C 0.155 3.845
11 C -0.112 4.112
12 C -0.084 4.084
13 H 0.060 0.940
14 C -0.119 4.119
15 C -0.131 4.131
16 C 0.100 3.900
17 N -0.604 5.604
18 C 0.520 3.480
19 O -0.586 6.586
20 C -0.102 4.102
21 C -0.063 4.063
22 C -0.110 4.110
23 C -0.112 4.112
24 C -0.127 4.127
25 C -0.126 4.126
26 C -0.122 4.122
27 C -0.111 4.111
28 C -0.069 4.069
29 C 0.119 3.881
30 H 0.258 0.742
31 H 0.366 0.634
32 H 0.034 0.966
33 H 0.013 0.987
34 H 0.058 0.942
35 H 0.075 0.925
36 H 0.060 0.940
37 H 0.074 0.926
38 H 0.060 0.940
39 H 0.099 0.901
40 H 0.091 0.909
41 H 0.110 0.890
42 H 0.130 0.870
43 H 0.077 0.923
44 H 0.114 0.886
45 H 0.141 0.859
46 H 0.146 0.854
47 H 0.142 0.858
48 H 0.127 0.873
49 H 0.082 0.918
50 H 0.074 0.926
51 H 0.068 0.932
52 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 33.417 -20.597 -4.991 39.571
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.634 5.634
2 C -0.256 4.256
3 Si 0.785 3.215
4 H -0.200 1.200
5 H -0.222 1.222
6 H -0.178 1.178
7 C -0.370 4.370
8 H 0.073 0.927
9 N -0.407 5.407
10 C 0.030 3.970
11 C -0.151 4.151
12 C -0.104 4.104
13 H 0.079 0.921
14 C -0.156 4.156
15 C -0.169 4.169
16 C -0.022 4.022
17 N -0.336 5.336
18 C 0.309 3.691
19 O -0.466 6.466
20 C -0.123 4.123
21 C -0.100 4.100
22 C -0.110 4.110
23 C -0.129 4.129
24 C -0.145 4.145
25 C -0.144 4.144
26 C -0.140 4.140
27 C -0.111 4.111
28 C -0.107 4.107
29 C -0.003 4.003
30 H 0.067 0.933
31 H 0.199 0.801
32 H 0.051 0.949
33 H 0.031 0.969
34 H 0.077 0.923
35 H 0.094 0.906
36 H 0.079 0.921
37 H 0.093 0.907
38 H 0.079 0.921
39 H 0.117 0.883
40 H 0.109 0.891
41 H 0.128 0.872
42 H 0.147 0.853
43 H 0.096 0.904
44 H 0.132 0.868
45 H 0.158 0.842
46 H 0.163 0.837
47 H 0.160 0.840
48 H 0.145 0.855
49 H 0.101 0.899
50 H 0.092 0.908
51 H 0.087 0.913
52 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 33.318 -20.344 -4.498 39.297
hybrid contribution -0.448 1.321 0.567 1.506
sum 32.870 -19.023 -3.931 38.181
Atomic orbital electron populations
1.69895 1.07152 1.26767 1.59562 1.25558 0.96197 1.01416 1.02451
0.85361 0.78539 0.79299 0.78298 1.19982 1.22156 1.17820 1.19059
0.82835 0.93511 1.41630 0.92738 1.42768 1.02537 1.04393 1.91002
1.20820 0.91042 0.87171 0.98014 1.21627 0.93332 0.97634 1.02473
1.21293 0.93836 0.95961 0.99336 0.92110 1.21653 1.00870 0.96732
0.96358 1.21997 0.94357 0.96921 1.03603 1.22282 0.96729 0.95998
0.87146 1.48178 1.40525 1.21998 1.22859 1.20843 0.79151 0.87728
0.81394 1.90682 1.66429 1.56997 1.32524 1.21967 0.97505 0.95195
0.97625 1.21047 0.91673 0.99884 0.97382 1.20682 0.97173 0.98983
0.94140 1.20915 0.93548 0.97683 1.00796 1.21399 0.99045 0.98974
0.95045 1.21361 0.98496 0.99950 0.94547 1.20878 0.94279 0.98191
1.00671 1.20685 0.96773 0.98510 0.95118 1.20891 0.92358 1.00330
0.97083 1.21559 0.90506 0.85529 1.02746 0.93278 0.80095 0.94853
0.96932 0.92291 0.90623 0.92120 0.90684 0.92112 0.88251 0.89109
0.87158 0.85260 0.90440 0.86781 0.84164 0.83659 0.83989 0.85502
0.89948 0.90767 0.91325 0.90008
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -64.00 13.97 21.65 0.30 -63.70 16
2 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16
3 Si 0.96 46.17 27.74 68.60 1.90 48.08 16
4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16
5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16
6 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16
7 C -0.24 -14.07 10.47 84.03 0.88 -13.19 16
8 H 0.05 3.50 8.06 -2.91 -0.02 3.48 16
9 N -0.76 -36.58 5.41 -343.43 -1.86 -38.44 16
10 C 0.16 5.94 6.02 86.38 0.52 6.46 16
11 C -0.11 -3.20 4.80 30.59 0.15 -3.05 16
12 C -0.08 -1.92 2.34 -10.72 -0.03 -1.95 16
13 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
14 C -0.12 -2.19 4.95 30.62 0.15 -2.04 16
15 C -0.13 -1.62 6.10 30.82 0.19 -1.43 16
16 C 0.10 1.01 5.81 86.50 0.50 1.51 16
17 N -0.60 -10.74 2.97 -818.07 -2.43 -13.17 16
18 C 0.52 11.07 6.97 87.66 0.61 11.68 16
19 O -0.59 -18.02 14.92 -3.02 -0.05 -18.07 16
20 C -0.10 -1.47 2.46 -10.62 -0.03 -1.50 16
21 C -0.06 -0.69 5.39 30.52 0.16 -0.53 16
22 C -0.11 -1.53 6.14 -19.59 -0.12 -1.65 16
23 C -0.11 -1.28 10.04 22.30 0.22 -1.06 16
24 C -0.13 -1.35 10.05 22.24 0.22 -1.13 16
25 C -0.13 -1.48 10.05 22.24 0.22 -1.26 16
26 C -0.12 -1.79 10.04 22.30 0.22 -1.56 16
27 C -0.11 -1.81 6.14 -19.60 -0.12 -1.93 16
28 C -0.07 -1.22 6.10 30.52 0.19 -1.03 16
29 C 0.12 2.55 5.71 86.36 0.49 3.04 16
30 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16
31 H 0.37 16.66 5.53 -92.71 -0.51 16.14 16
32 H 0.03 1.26 6.54 -2.38 -0.02 1.25 16
33 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16
34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
35 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16
36 H 0.06 1.33 6.51 -2.39 -0.02 1.32 16
37 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16
38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16
40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16
41 H 0.11 0.60 4.56 -2.39 -0.01 0.59 16
42 H 0.13 1.31 7.56 -2.39 -0.02 1.30 16
43 H 0.08 1.00 7.89 -2.39 -0.02 0.99 16
44 H 0.11 0.58 6.87 -2.39 -0.02 0.56 16
45 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16
46 H 0.15 0.83 8.06 -2.91 -0.02 0.80 16
47 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16
48 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16
49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
50 H 0.07 1.69 6.99 -2.39 -0.02 1.67 16
51 H 0.07 1.82 7.01 -2.38 -0.02 1.80 16
52 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
Total: -1.00 -77.91 400.26 3.13 -74.78
By element:
Atomic # 1 Polarization: 24.23 SS G_CDS: 0.34 Total: 24.57 kcal
Atomic # 6 Polarization: -18.96 SS G_CDS: 4.91 Total: -14.04 kcal
Atomic # 7 Polarization: -111.33 SS G_CDS: -3.98 Total: -115.31 kcal
Atomic # 8 Polarization: -18.02 SS G_CDS: -0.05 Total: -18.07 kcal
Atomic # 14 Polarization: 46.17 SS G_CDS: 1.90 Total: 48.08 kcal
Total: -77.91 3.13 -74.78 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269770814.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.539 kcal
(2) G-P(sol) polarization free energy of solvation -77.906 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.367 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.238 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds