Wall clock time and date at job start Sat Apr 11 2020 06:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48495 * 109.47261 * 270.00392 * 3 2 1 5 5 H 1.48499 * 109.46723 * 30.00774 * 3 2 1 6 6 H 1.48495 * 109.47073 * 150.00312 * 3 2 1 7 7 C 1.38813 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00035 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99997 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99884 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47287 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.84447 * 316.19270 * 11 10 9 13 13 C 1.53782 * 113.61604 * 87.49852 * 11 10 9 14 14 C 1.53776 * 87.08049 * 139.98625 * 13 11 10 15 15 H 1.09009 * 113.68949 * 220.01216 * 14 13 11 16 16 N 1.46492 * 113.61655 * 89.11845 * 14 13 11 17 17 C 1.34781 * 120.00294 * 107.50628 * 16 14 13 18 18 O 1.21280 * 119.99777 * 359.97438 * 17 16 14 19 19 C 1.50693 * 120.00112 * 180.02562 * 17 16 14 20 20 C 1.53003 * 109.46917 * 179.97438 * 19 17 16 21 21 H 1.08992 * 115.55493 * 29.32531 * 20 19 17 22 22 C 1.53006 * 117.51468 * 243.62265 * 20 19 17 23 23 C 1.52999 * 60.00089 * 252.52084 * 22 20 19 24 24 H 1.09002 * 117.49803 * 107.49109 * 23 22 20 25 25 C 1.53005 * 117.51737 * 252.51928 * 23 22 20 26 26 C 1.50695 * 109.46979 * 243.71782 * 25 23 22 27 27 C 1.38238 * 119.99819 * 269.72626 * 26 25 23 28 28 C 1.38240 * 119.99881 * 179.76757 * 27 26 25 29 29 C 1.38241 * 119.99839 * 0.48685 * 28 27 26 30 30 C 1.38241 * 120.00001 * 359.79146 * 29 28 27 31 31 C 1.38235 * 120.00052 * 90.00291 * 26 25 23 32 32 C 1.53777 * 87.08213 * 334.56632 * 14 13 11 33 33 H 0.96994 * 120.00589 * 359.97438 * 1 2 3 34 34 H 0.96997 * 119.99974 * 0.02562 * 9 7 2 35 35 H 1.08999 * 109.47393 * 60.00123 * 10 9 7 36 36 H 1.09000 * 109.46780 * 299.99971 * 10 9 7 37 37 H 1.09000 * 113.61189 * 25.43184 * 13 11 10 38 38 H 1.08995 * 113.61651 * 254.53529 * 13 11 10 39 39 H 0.97004 * 119.99927 * 287.50190 * 16 14 13 40 40 H 1.08997 * 109.47523 * 59.99205 * 19 17 16 41 41 H 1.08999 * 109.47365 * 299.99138 * 19 17 16 42 42 H 1.09003 * 117.49619 * 145.02781 * 22 20 19 43 43 H 1.08995 * 117.50015 * 0.02562 * 22 20 19 44 44 H 1.08998 * 109.46915 * 3.72051 * 25 23 22 45 45 H 1.09001 * 109.46560 * 123.71648 * 25 23 22 46 46 H 1.07992 * 120.00190 * 359.97438 * 27 26 25 47 47 H 1.08000 * 119.99898 * 180.25164 * 28 27 26 48 48 H 1.07992 * 119.99755 * 179.76395 * 29 28 27 49 49 H 1.07995 * 119.99918 * 179.97438 * 30 29 28 50 50 H 1.08003 * 120.00139 * 0.02562 * 31 26 25 51 51 H 1.09007 * 113.61956 * 139.98090 * 32 14 13 52 52 H 1.08998 * 113.62102 * 270.88693 * 32 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 6 5.6164 -2.1912 -0.0020 12 1 5.9000 -1.4005 -0.6966 13 6 6.2109 -2.0194 1.4059 14 6 7.4242 -2.8210 0.9058 15 1 7.8131 -3.5291 1.6377 16 7 8.4709 -1.9890 0.3072 17 6 9.6282 -1.7838 0.9667 18 8 9.8029 -2.2875 2.0561 19 6 10.7046 -0.9275 0.3511 20 6 11.9041 -0.8568 1.2985 21 1 12.0500 -1.7272 1.9380 22 6 12.2699 0.5125 1.8747 23 6 13.1540 -0.1271 0.8023 24 1 13.1217 0.3029 -0.1988 25 6 14.5132 -0.6755 1.2415 26 6 15.6114 0.0980 0.5585 27 6 16.0998 -0.3274 -0.6628 28 6 17.1039 0.3849 -1.2917 29 6 17.6266 1.5168 -0.6945 30 6 17.1422 1.9389 0.5295 31 6 16.1344 1.2296 1.1558 32 6 6.4786 -3.4585 -0.1258 33 1 -0.4851 0.8399 0.0004 34 1 3.8646 -0.3620 -0.0007 35 1 3.8486 -3.0418 -0.8925 36 1 3.8492 -3.0429 0.8875 37 1 5.6425 -2.5278 2.1848 38 1 6.4447 -0.9851 1.6579 39 1 8.3310 -1.5859 -0.5640 40 1 10.3170 0.0768 0.1807 41 1 11.0164 -1.3626 -0.5984 42 1 12.6565 0.5429 2.8935 43 1 11.6558 1.3632 1.5794 44 1 14.6144 -0.5731 2.3219 45 1 14.5858 -1.7281 0.9679 46 1 15.6946 -1.2142 -1.1272 47 1 17.4826 0.0549 -2.2478 48 1 18.4136 2.0710 -1.1840 49 1 17.5508 2.8229 0.9962 50 1 15.7562 1.5591 2.1123 51 1 6.9286 -3.5859 -1.1105 52 1 5.9835 -4.3603 0.2343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485690793.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:45:53 Heat of formation + Delta-G solvation = 31.669391 kcal Electronic energy + Delta-G solvation = -27658.237177 eV Core-core repulsion = 23816.645648 eV Total energy + Delta-G solvation = -3841.591530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.40728 -39.79135 -38.74735 -37.60141 -34.70686 -33.28655 -32.99482 -31.28178 -31.21102 -29.83516 -27.38003 -26.85567 -25.60529 -23.33943 -22.97716 -22.36845 -21.83509 -21.34319 -20.73906 -20.29598 -19.22826 -17.60555 -17.31852 -17.09487 -16.22085 -15.70874 -15.56776 -15.53697 -15.06825 -14.75117 -14.60539 -14.29808 -14.23719 -13.82354 -13.61372 -13.57359 -13.42376 -13.13339 -12.88622 -12.71445 -12.54742 -12.46662 -12.29606 -11.81765 -11.76681 -11.69666 -11.53759 -11.41197 -11.40311 -10.90727 -10.65155 -10.34685 -10.25191 -10.24124 -10.18043 -9.94678 -9.84472 -9.57705 -9.32003 -9.09181 -9.06298 -8.86966 -7.21256 -5.76355 -3.11279 0.95203 1.00269 2.49701 2.94877 3.36652 3.36711 3.39233 3.44590 3.44602 4.18528 4.38396 4.40502 4.51348 4.55313 4.59079 4.59871 4.63422 4.67393 4.73093 4.81661 4.99469 5.00319 5.01037 5.09070 5.11676 5.12769 5.20055 5.30014 5.37097 5.46246 5.52069 5.54410 5.64362 5.64511 5.66775 5.68868 5.82789 5.85059 5.86934 5.95377 6.01950 6.07928 6.11020 6.12171 6.14015 6.24593 6.26480 6.55659 6.61164 6.68745 6.82364 7.37889 8.00618 8.10338 8.43017 9.22610 9.95136 10.15357 11.42266 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.001536 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.905662 B =18228.804737 C =19132.239658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.167 3.833 11 C -0.119 4.119 12 H 0.086 0.914 13 C -0.141 4.141 14 C 0.116 3.884 15 H 0.100 0.900 16 N -0.712 5.712 17 C 0.517 3.483 18 O -0.539 6.539 19 C -0.112 4.112 20 C -0.133 4.133 21 H 0.119 0.881 22 C -0.171 4.171 23 C -0.143 4.143 24 H 0.105 0.895 25 C -0.052 4.052 26 C -0.076 4.076 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.127 4.127 30 C -0.119 4.119 31 C -0.115 4.115 32 C -0.136 4.136 33 H 0.259 0.741 34 H 0.360 0.640 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.401 0.599 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.070 0.930 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.132 -0.672 -1.434 37.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.138 4.138 12 H 0.104 0.896 13 C -0.180 4.180 14 C 0.010 3.990 15 H 0.118 0.882 16 N -0.363 5.363 17 C 0.304 3.696 18 O -0.416 6.416 19 C -0.152 4.152 20 C -0.151 4.151 21 H 0.137 0.863 22 C -0.208 4.208 23 C -0.161 4.161 24 H 0.123 0.877 25 C -0.089 4.089 26 C -0.076 4.076 27 C -0.136 4.136 28 C -0.137 4.137 29 C -0.145 4.145 30 C -0.137 4.137 31 C -0.133 4.133 32 C -0.175 4.175 33 H 0.069 0.931 34 H 0.192 0.808 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.088 0.912 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 37.016 -1.131 -0.635 37.039 hybrid contribution 0.318 1.629 -0.524 1.741 sum 37.334 0.498 -1.160 37.355 Atomic orbital electron populations 1.69697 1.05099 1.25783 1.57740 1.24671 0.95231 0.97177 1.02140 0.86536 0.79234 0.85024 0.77686 1.21142 1.21744 1.20384 1.19090 0.80762 0.94729 1.42790 0.89252 1.42701 1.03971 1.02295 1.91120 1.20619 0.87701 0.89218 0.98514 1.22813 0.96449 0.97355 0.97136 0.89613 1.23443 0.95994 1.00887 0.97650 1.21925 0.86963 0.93468 0.96616 0.88233 1.45730 1.15945 1.52110 1.22529 1.20565 0.82687 0.80924 0.85457 1.90689 1.79999 1.50211 1.20677 1.21233 0.93586 1.00821 0.99534 1.22161 0.93916 0.97480 1.01563 0.86264 1.23230 1.03129 0.96099 0.98341 1.22391 0.90395 1.04113 0.99243 0.87687 1.20206 0.90221 0.98688 0.99786 1.19859 0.96790 0.95837 0.95085 1.21092 0.97245 1.00155 0.95103 1.21165 0.97051 0.95637 0.99897 1.21161 1.00338 0.97140 0.95886 1.21169 0.97149 0.99817 0.95614 1.21083 0.96860 0.95169 1.00172 1.23295 0.96675 0.98538 0.98970 0.93091 0.80758 0.95528 0.95392 0.88904 0.91558 0.76484 0.88704 0.88455 0.88644 0.88790 0.90688 0.90423 0.86050 0.86147 0.86256 0.86162 0.86104 0.91168 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.61 13.97 55.49 0.78 -28.84 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 N -0.76 -17.99 5.41 -59.91 -0.32 -18.32 16 10 C 0.17 3.14 6.10 -4.04 -0.02 3.12 16 11 C -0.12 -1.69 3.63 -89.81 -0.33 -2.01 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 13 C -0.14 -1.96 7.43 -25.92 -0.19 -2.15 16 14 C 0.12 1.36 4.32 -67.13 -0.29 1.07 16 15 H 0.10 1.27 7.47 -51.92 -0.39 0.88 16 16 N -0.71 -7.22 5.26 -53.03 -0.28 -7.50 16 17 C 0.52 5.75 7.83 -10.99 -0.09 5.66 16 18 O -0.54 -8.11 15.16 5.56 0.08 -8.03 16 19 C -0.11 -0.85 5.98 -27.89 -0.17 -1.02 16 20 C -0.13 -1.09 5.13 -90.61 -0.47 -1.55 16 21 H 0.12 1.19 7.30 -51.93 -0.38 0.81 16 22 C -0.17 -1.29 9.82 -26.73 -0.26 -1.55 16 23 C -0.14 -0.97 5.44 -90.61 -0.49 -1.46 16 24 H 0.11 0.71 8.07 -51.93 -0.42 0.29 16 25 C -0.05 -0.33 5.63 -27.88 -0.16 -0.49 16 26 C -0.08 -0.53 5.09 -104.63 -0.53 -1.06 16 27 C -0.12 -0.80 9.70 -39.58 -0.38 -1.18 16 28 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 29 C -0.13 -0.80 10.05 -39.58 -0.40 -1.20 16 30 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 31 C -0.11 -0.80 9.70 -39.58 -0.38 -1.18 16 32 C -0.14 -1.51 7.39 -25.92 -0.19 -1.70 16 33 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 34 H 0.36 8.36 5.53 -40.82 -0.23 8.14 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.03 0.54 7.84 -51.93 -0.41 0.13 16 37 H 0.09 1.33 7.89 -51.93 -0.41 0.92 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 3.15 8.70 -40.82 -0.36 2.79 16 40 H 0.09 0.62 7.88 -51.93 -0.41 0.21 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.70 8.03 -51.93 -0.42 0.28 16 43 H 0.09 0.68 8.03 -51.93 -0.42 0.27 16 44 H 0.07 0.46 7.82 -51.93 -0.41 0.06 16 45 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 48 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 49 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 50 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 51 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 425.70 15.07 6.42 6.42 Total: -1.00 -34.57 425.70 -12.34 -46.91 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -8.89 Total: 8.02 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -5.40 Total: -16.19 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.17 Total: -54.66 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.08 Total: -8.03 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.57 -12.34 -46.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485690793.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.580 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds