Wall clock time and date at job start Sat Apr 11 2020 06:45:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86805 * 119.99910 * 2 1
4 4 H 1.48495 * 109.47261 * 270.00392 * 3 2 1
5 5 H 1.48499 * 109.46723 * 30.00774 * 3 2 1
6 6 H 1.48495 * 109.47073 * 150.00312 * 3 2 1
7 7 C 1.38813 * 120.00260 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00035 * 0.02562 * 7 2 1
9 9 N 1.36941 * 119.99997 * 179.97438 * 7 2 1
10 10 C 1.46498 * 119.99884 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.47287 * 180.02562 * 10 9 7
12 12 H 1.09003 * 112.84447 * 316.19270 * 11 10 9
13 13 C 1.53782 * 113.61604 * 87.49852 * 11 10 9
14 14 C 1.53776 * 87.08049 * 139.98625 * 13 11 10
15 15 H 1.09009 * 113.68949 * 220.01216 * 14 13 11
16 16 N 1.46492 * 113.61655 * 89.11845 * 14 13 11
17 17 C 1.34781 * 120.00294 * 107.50628 * 16 14 13
18 18 O 1.21280 * 119.99777 * 359.97438 * 17 16 14
19 19 C 1.50693 * 120.00112 * 180.02562 * 17 16 14
20 20 C 1.53003 * 109.46917 * 179.97438 * 19 17 16
21 21 H 1.08992 * 115.55493 * 29.32531 * 20 19 17
22 22 C 1.53006 * 117.51468 * 243.62265 * 20 19 17
23 23 C 1.52999 * 60.00089 * 252.52084 * 22 20 19
24 24 H 1.09002 * 117.49803 * 107.49109 * 23 22 20
25 25 C 1.53005 * 117.51737 * 252.51928 * 23 22 20
26 26 C 1.50695 * 109.46979 * 243.71782 * 25 23 22
27 27 C 1.38238 * 119.99819 * 269.72626 * 26 25 23
28 28 C 1.38240 * 119.99881 * 179.76757 * 27 26 25
29 29 C 1.38241 * 119.99839 * 0.48685 * 28 27 26
30 30 C 1.38241 * 120.00001 * 359.79146 * 29 28 27
31 31 C 1.38235 * 120.00052 * 90.00291 * 26 25 23
32 32 C 1.53777 * 87.08213 * 334.56632 * 14 13 11
33 33 H 0.96994 * 120.00589 * 359.97438 * 1 2 3
34 34 H 0.96997 * 119.99974 * 0.02562 * 9 7 2
35 35 H 1.08999 * 109.47393 * 60.00123 * 10 9 7
36 36 H 1.09000 * 109.46780 * 299.99971 * 10 9 7
37 37 H 1.09000 * 113.61189 * 25.43184 * 13 11 10
38 38 H 1.08995 * 113.61651 * 254.53529 * 13 11 10
39 39 H 0.97004 * 119.99927 * 287.50190 * 16 14 13
40 40 H 1.08997 * 109.47523 * 59.99205 * 19 17 16
41 41 H 1.08999 * 109.47365 * 299.99138 * 19 17 16
42 42 H 1.09003 * 117.49619 * 145.02781 * 22 20 19
43 43 H 1.08995 * 117.50015 * 0.02562 * 22 20 19
44 44 H 1.08998 * 109.46915 * 3.72051 * 25 23 22
45 45 H 1.09001 * 109.46560 * 123.71648 * 25 23 22
46 46 H 1.07992 * 120.00190 * 359.97438 * 27 26 25
47 47 H 1.08000 * 119.99898 * 180.25164 * 28 27 26
48 48 H 1.07992 * 119.99755 * 179.76395 * 29 28 27
49 49 H 1.07995 * 119.99918 * 179.97438 * 30 29 28
50 50 H 1.08003 * 120.00139 * 0.02562 * 31 26 25
51 51 H 1.09007 * 113.61956 * 139.98090 * 32 14 13
52 52 H 1.08998 * 113.62102 * 270.88693 * 32 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4976 2.0465 -1.4000
5 1 1.4476 2.6526 0.7002
6 1 3.5477 1.4402 0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 1.4703 -2.1375 -0.0014
9 7 3.3797 -1.2021 -0.0011
10 6 4.1122 -2.4708 -0.0022
11 6 5.6164 -2.1912 -0.0020
12 1 5.9000 -1.4005 -0.6966
13 6 6.2109 -2.0194 1.4059
14 6 7.4242 -2.8210 0.9058
15 1 7.8131 -3.5291 1.6377
16 7 8.4709 -1.9890 0.3072
17 6 9.6282 -1.7838 0.9667
18 8 9.8029 -2.2875 2.0561
19 6 10.7046 -0.9275 0.3511
20 6 11.9041 -0.8568 1.2985
21 1 12.0500 -1.7272 1.9380
22 6 12.2699 0.5125 1.8747
23 6 13.1540 -0.1271 0.8023
24 1 13.1217 0.3029 -0.1988
25 6 14.5132 -0.6755 1.2415
26 6 15.6114 0.0980 0.5585
27 6 16.0998 -0.3274 -0.6628
28 6 17.1039 0.3849 -1.2917
29 6 17.6266 1.5168 -0.6945
30 6 17.1422 1.9389 0.5295
31 6 16.1344 1.2296 1.1558
32 6 6.4786 -3.4585 -0.1258
33 1 -0.4851 0.8399 0.0004
34 1 3.8646 -0.3620 -0.0007
35 1 3.8486 -3.0418 -0.8925
36 1 3.8492 -3.0429 0.8875
37 1 5.6425 -2.5278 2.1848
38 1 6.4447 -0.9851 1.6579
39 1 8.3310 -1.5859 -0.5640
40 1 10.3170 0.0768 0.1807
41 1 11.0164 -1.3626 -0.5984
42 1 12.6565 0.5429 2.8935
43 1 11.6558 1.3632 1.5794
44 1 14.6144 -0.5731 2.3219
45 1 14.5858 -1.7281 0.9679
46 1 15.6946 -1.2142 -1.1272
47 1 17.4826 0.0549 -2.2478
48 1 18.4136 2.0710 -1.1840
49 1 17.5508 2.8229 0.9962
50 1 15.7562 1.5591 2.1123
51 1 6.9286 -3.5859 -1.1105
52 1 5.9835 -4.3603 0.2343
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001485690793.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:52
Heat of formation + Delta-G solvation = 12.369157 kcal
Electronic energy + Delta-G solvation = -27659.074098 eV
Core-core repulsion = 23816.645648 eV
Total energy + Delta-G solvation = -3842.428451 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.31491 -40.31465 -39.64169 -38.30138 -36.47456 -34.43253 -33.57861 -33.15809
-31.72565 -30.56310 -28.72005 -27.58303 -26.63066 -24.94300 -23.45839 -23.15426
-22.84016 -22.46112 -21.29297 -20.98129 -20.44512 -19.46886 -18.11453 -17.64586
-17.07265 -16.68897 -16.37741 -16.28202 -16.02016 -15.94779 -15.78239 -15.36616
-15.13370 -15.03705 -14.57075 -14.42793 -14.25077 -13.96378 -13.90682 -13.72294
-13.50709 -13.40872 -13.30420 -13.17675 -12.96298 -12.69883 -12.33619 -12.27645
-12.18200 -11.98756 -11.88135 -11.84404 -11.71497 -11.40332 -11.19116 -11.01320
-10.90307 -10.87404 -10.59822 -10.00451 -9.78338 -9.54493 -9.28120 -8.03461
-5.36472 0.48439 0.53874 1.36204 1.40437 1.47860 1.66075 2.16342
2.47755 2.83692 2.92888 3.27395 3.47678 3.59486 3.63311 3.76766
3.85919 3.88730 3.93294 3.99168 4.08912 4.11530 4.19136 4.24765
4.33524 4.50769 4.52081 4.56507 4.59932 4.65431 4.69185 4.73962
4.77619 4.85162 4.90031 4.91436 4.93319 4.93516 4.97816 4.99296
5.12988 5.19556 5.22341 5.26151 5.31009 5.36408 5.44434 5.62498
5.67107 5.69145 5.76283 5.77382 6.17088 6.20885 6.60148 7.08160
7.30119 7.85350 8.04412 9.18292
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.016885 B = 0.001536 C = 0.001463
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.905662 B =18228.804737 C =19132.239658
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.985 5.985
2 C -0.065 4.065
3 Si 0.958 3.042
4 H -0.274 1.274
5 H -0.297 1.297
6 H -0.253 1.253
7 C -0.238 4.238
8 H 0.054 0.946
9 N -0.758 5.758
10 C 0.162 3.838
11 C -0.114 4.114
12 H 0.097 0.903
13 C -0.146 4.146
14 C 0.125 3.875
15 H 0.089 0.911
16 N -0.703 5.703
17 C 0.514 3.486
18 O -0.584 6.584
19 C -0.103 4.103
20 C -0.143 4.143
21 H 0.097 0.903
22 C -0.178 4.178
23 C -0.125 4.125
24 H 0.112 0.888
25 C -0.050 4.050
26 C -0.085 4.085
27 C -0.129 4.129
28 C -0.128 4.128
29 C -0.137 4.137
30 C -0.130 4.130
31 C -0.129 4.129
32 C -0.118 4.118
33 H 0.258 0.742
34 H 0.366 0.634
35 H 0.026 0.974
36 H 0.021 0.979
37 H 0.082 0.918
38 H 0.056 0.944
39 H 0.415 0.585
40 H 0.112 0.888
41 H 0.123 0.877
42 H 0.092 0.908
43 H 0.099 0.901
44 H 0.073 0.927
45 H 0.080 0.920
46 H 0.132 0.868
47 H 0.137 0.863
48 H 0.136 0.864
49 H 0.134 0.866
50 H 0.126 0.874
51 H 0.094 0.906
52 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 39.977 0.308 -2.921 40.085
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.636 5.636
2 C -0.257 4.257
3 Si 0.785 3.215
4 H -0.200 1.200
5 H -0.224 1.224
6 H -0.178 1.178
7 C -0.369 4.369
8 H 0.072 0.928
9 N -0.403 5.403
10 C 0.036 3.964
11 C -0.132 4.132
12 H 0.115 0.885
13 C -0.185 4.185
14 C 0.019 3.981
15 H 0.107 0.893
16 N -0.355 5.355
17 C 0.302 3.698
18 O -0.464 6.464
19 C -0.143 4.143
20 C -0.161 4.161
21 H 0.115 0.885
22 C -0.215 4.215
23 C -0.143 4.143
24 H 0.130 0.870
25 C -0.087 4.087
26 C -0.085 4.085
27 C -0.147 4.147
28 C -0.146 4.146
29 C -0.155 4.155
30 C -0.148 4.148
31 C -0.147 4.147
32 C -0.156 4.156
33 H 0.067 0.933
34 H 0.199 0.801
35 H 0.044 0.956
36 H 0.039 0.961
37 H 0.101 0.899
38 H 0.075 0.925
39 H 0.252 0.748
40 H 0.130 0.870
41 H 0.141 0.859
42 H 0.110 0.890
43 H 0.117 0.883
44 H 0.091 0.909
45 H 0.099 0.901
46 H 0.150 0.850
47 H 0.154 0.846
48 H 0.154 0.846
49 H 0.152 0.848
50 H 0.144 0.856
51 H 0.113 0.887
52 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 39.907 -0.173 -2.154 39.966
hybrid contribution -0.585 1.214 -0.030 1.348
sum 39.323 1.042 -2.184 39.397
Atomic orbital electron populations
1.69888 1.07209 1.26711 1.59752 1.25542 0.96145 1.01382 1.02607
0.85361 0.78528 0.79366 0.78237 1.19992 1.22390 1.17794 1.19088
0.82995 0.93462 1.41329 0.92752 1.42721 1.02335 1.04367 1.90897
1.20819 0.90480 0.87158 0.97965 1.22758 0.93171 0.99624 0.97672
0.88481 1.23458 0.97175 1.00587 0.97297 1.21711 0.86706 0.93037
0.96661 0.89263 1.45668 1.15246 1.51603 1.22964 1.21203 0.83254
0.80478 0.84847 1.90677 1.80855 1.52109 1.22786 1.21263 0.91993
1.01056 0.99970 1.22081 0.95108 0.96933 1.02006 0.88480 1.23297
1.03595 0.95960 0.98605 1.22345 0.89887 1.02887 0.99178 0.87026
1.20187 0.90032 0.98814 0.99683 1.19956 0.97109 0.96042 0.95412
1.21308 0.97510 1.00676 0.95163 1.21445 0.96930 0.95635 1.00610
1.21452 1.00718 0.97340 0.95950 1.21427 0.97102 1.00342 0.95894
1.21274 0.97302 0.95476 1.00640 1.23214 0.95211 0.97134 1.00046
0.93347 0.80133 0.95562 0.96092 0.89908 0.92500 0.74763 0.86993
0.85858 0.88973 0.88265 0.90877 0.90120 0.84999 0.84552 0.84634
0.84792 0.85579 0.88733 0.88051
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -63.77 13.97 21.65 0.30 -63.47 16
2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16
3 Si 0.96 45.56 27.74 68.60 1.90 47.46 16
4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16
6 H -0.25 -10.89 6.52 99.48 0.65 -10.24 16
7 C -0.24 -13.76 10.47 84.03 0.88 -12.88 16
8 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16
9 N -0.76 -35.32 5.41 -343.45 -1.86 -37.18 16
10 C 0.16 5.92 6.10 86.38 0.53 6.45 16
11 C -0.11 -2.96 3.63 -10.27 -0.04 -2.99 16
12 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16
13 C -0.15 -3.85 7.43 31.12 0.23 -3.62 16
14 C 0.12 2.68 4.32 45.52 0.20 2.88 16
15 H 0.09 2.18 7.47 -2.38 -0.02 2.16 16
16 N -0.70 -12.36 5.26 -440.06 -2.32 -14.67 16
17 C 0.51 10.47 7.83 87.65 0.69 11.16 16
18 O -0.58 -17.33 15.16 -3.03 -0.05 -17.38 16
19 C -0.10 -1.30 5.98 29.85 0.18 -1.12 16
20 C -0.14 -2.15 5.13 -10.79 -0.06 -2.21 16
21 H 0.10 1.94 7.30 -2.39 -0.02 1.92 16
22 C -0.18 -2.46 9.82 30.60 0.30 -2.16 16
23 C -0.12 -1.49 5.44 -10.79 -0.06 -1.55 16
24 H 0.11 1.22 8.07 -2.39 -0.02 1.20 16
25 C -0.05 -0.59 5.63 29.85 0.17 -0.42 16
26 C -0.09 -1.10 5.09 -19.87 -0.10 -1.20 16
27 C -0.13 -1.55 9.70 22.27 0.22 -1.33 16
28 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16
29 C -0.14 -1.52 10.05 22.27 0.22 -1.30 16
30 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16
31 C -0.13 -1.67 9.70 22.27 0.22 -1.45 16
32 C -0.12 -2.27 7.39 31.12 0.23 -2.04 16
33 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16
34 H 0.37 16.14 5.53 -92.71 -0.51 15.63 16
35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16
36 H 0.02 0.81 7.84 -2.39 -0.02 0.79 16
37 H 0.08 2.33 7.89 -2.39 -0.02 2.31 16
38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
39 H 0.42 4.94 8.70 -92.71 -0.81 4.13 16
40 H 0.11 1.08 7.88 -2.39 -0.02 1.06 16
41 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16
42 H 0.09 1.31 8.03 -2.39 -0.02 1.29 16
43 H 0.10 1.26 8.03 -2.39 -0.02 1.24 16
44 H 0.07 0.87 7.82 -2.39 -0.02 0.85 16
45 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16
46 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16
47 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16
48 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16
49 H 0.13 1.09 8.06 -2.91 -0.02 1.07 16
50 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16
51 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16
52 H 0.10 1.91 8.10 -2.39 -0.02 1.89 16
Total: -1.00 -76.34 425.70 2.23 -74.11
By element:
Atomic # 1 Polarization: 31.33 SS G_CDS: -0.47 Total: 30.86 kcal
Atomic # 6 Polarization: -24.45 SS G_CDS: 4.72 Total: -19.73 kcal
Atomic # 7 Polarization: -111.45 SS G_CDS: -3.87 Total: -115.32 kcal
Atomic # 8 Polarization: -17.33 SS G_CDS: -0.05 Total: -17.38 kcal
Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal
Total: -76.34 2.23 -74.11 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485690793.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.481 kcal
(2) G-P(sol) polarization free energy of solvation -76.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.139 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.111 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.369 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds