Wall clock time and date at job start Sat Apr 11 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 120.00029 * 2 1 4 4 C 1.38212 * 119.99979 * 180.27836 * 3 2 1 5 5 C 1.38258 * 120.00146 * 359.73397 * 4 3 2 6 6 C 1.38212 * 119.99799 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00030 * 179.97438 * 6 5 4 8 8 C 1.50696 * 112.85275 * 51.71327 * 7 6 5 9 9 O 1.21291 * 120.00175 * 236.87124 * 8 7 6 10 10 N 1.34780 * 119.99839 * 56.86738 * 8 7 6 11 11 C 1.47075 * 120.88206 * 5.29322 * 10 8 7 12 12 C 1.53700 * 108.27676 * 128.75185 * 11 10 8 13 13 N 1.46902 * 109.25578 * 54.08371 * 12 11 10 14 14 C 1.46899 * 110.99567 * 172.60690 * 13 12 11 15 15 C 1.50694 * 109.47423 * 60.39981 * 14 13 12 16 16 H 1.08003 * 119.99686 * 1.01557 * 15 14 13 17 17 C 1.37879 * 120.00334 * 181.01916 * 15 14 13 18 18 N 1.31505 * 120.00086 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99752 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47274 * 89.99789 * 19 17 15 21 21 H 1.48502 * 109.47398 * 210.00100 * 19 17 15 22 22 H 1.48501 * 109.47027 * 330.00218 * 19 17 15 23 23 C 1.46892 * 111.26627 * 296.75508 * 13 12 11 24 24 C 1.47081 * 120.87968 * 185.56597 * 10 8 7 25 25 C 1.53783 * 113.61463 * 280.41056 * 7 6 5 26 26 C 1.53783 * 87.08289 * 220.01863 * 25 7 6 27 27 C 1.53784 * 113.61519 * 182.91204 * 7 6 5 28 28 C 1.38216 * 120.00148 * 179.73578 * 2 1 3 29 29 H 1.09002 * 109.47508 * 275.23598 * 1 2 3 30 30 H 1.08999 * 109.47084 * 35.24069 * 1 2 3 31 31 H 1.09001 * 109.47081 * 155.23670 * 1 2 3 32 32 H 1.08000 * 120.00101 * 0.03208 * 3 2 1 33 33 H 1.08006 * 120.00019 * 179.76183 * 4 3 2 34 34 H 1.08000 * 120.00282 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.62614 * 248.52185 * 11 10 8 36 36 H 1.09004 * 109.62575 * 9.09840 * 11 10 8 37 37 H 1.09000 * 109.64510 * 294.07953 * 12 11 10 38 38 H 1.08999 * 109.41777 * 173.94981 * 12 11 10 39 39 H 1.09007 * 109.46374 * 180.39794 * 14 13 12 40 40 H 1.09000 * 109.47392 * 300.39042 * 14 13 12 41 41 H 0.97007 * 119.99750 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.49939 * 303.14519 * 23 13 12 43 43 H 1.09009 * 109.49440 * 183.06375 * 23 13 12 44 44 H 1.09000 * 109.63175 * 350.89968 * 24 10 8 45 45 H 1.09003 * 109.62388 * 111.28501 * 24 10 8 46 46 H 1.09002 * 113.60962 * 334.56220 * 25 7 6 47 47 H 1.08993 * 113.61738 * 105.47086 * 25 7 6 48 48 H 1.09000 * 113.61385 * 270.88609 * 26 25 7 49 49 H 1.08994 * 113.61918 * 139.97557 * 26 25 7 50 50 H 1.09000 * 113.61238 * 254.52293 * 27 7 6 51 51 H 1.08996 * 113.61441 * 25.42760 * 27 7 6 52 52 H 1.08004 * 120.00020 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0061 6 6 3.5806 -1.1970 0.0000 7 6 4.3341 -2.5021 -0.0008 8 6 5.3773 -2.5763 1.0841 9 8 6.5363 -2.7898 0.7975 10 7 5.0223 -2.4054 2.3731 11 6 3.6092 -2.2607 2.7541 12 6 3.3094 -3.2602 3.8826 13 7 4.2704 -3.0596 4.9754 14 6 3.9138 -3.8725 6.1458 15 6 3.9235 -5.3309 5.7663 16 1 4.1858 -5.6255 4.7609 17 6 3.5973 -6.2891 6.7026 18 7 3.6052 -7.5617 6.3712 19 14 3.1441 -5.7795 8.4416 20 1 1.6785 -5.5546 8.5256 21 1 3.5353 -6.8532 9.3900 22 1 3.8580 -4.5254 8.7919 23 6 5.6433 -3.3427 4.5362 24 6 6.0383 -2.3527 3.4352 25 6 4.8557 -2.9113 -1.3884 26 6 4.4545 -4.3514 -1.0277 27 6 3.4231 -3.7393 -0.0652 28 6 2.1981 -1.1970 0.0055 29 1 -0.3634 0.0938 1.0234 30 1 -0.3633 0.8393 -0.5930 31 1 -0.3633 -0.9332 -0.4305 32 1 1.6583 2.1326 0.0005 33 1 4.1204 2.1327 -0.0097 34 1 5.3517 0.0000 -0.0102 35 1 3.4262 -1.2443 3.1028 36 1 2.9743 -2.4757 1.8945 37 1 3.3972 -4.2783 3.5033 38 1 2.2977 -3.0957 4.2531 39 1 4.6376 -3.6995 6.9423 40 1 2.9187 -3.5937 6.4923 41 1 3.3760 -8.2358 7.0301 42 1 5.6987 -4.3596 4.1479 43 1 6.3243 -3.2379 5.3809 44 1 7.0103 -2.6286 3.0263 45 1 6.0868 -1.3441 3.8458 46 1 4.2795 -2.4911 -2.2128 47 1 5.9303 -2.7746 -1.5087 48 1 5.2428 -4.9113 -0.5246 49 1 4.0066 -4.9004 -1.8560 50 1 3.3413 -4.2711 0.8828 51 1 2.4553 -3.5454 -0.5277 52 1 1.6581 -2.1323 0.0094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207336.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:46:00 Heat of formation + Delta-G solvation = 23.474120 kcal Electronic energy + Delta-G solvation = -31573.547100 eV Core-core repulsion = 27731.600197 eV Total energy + Delta-G solvation = -3841.946903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.34103 -39.13567 -38.12529 -36.88979 -34.50738 -32.98290 -32.31802 -31.39564 -30.59918 -28.75289 -27.37177 -26.40536 -25.74704 -25.21650 -23.16824 -22.45266 -22.29127 -21.23680 -20.75214 -19.60874 -18.10039 -17.16807 -16.86212 -16.46124 -15.99656 -15.61687 -15.18357 -14.86188 -14.68532 -14.48952 -14.41108 -14.23780 -13.98980 -13.93730 -13.33439 -13.18996 -13.14564 -12.75810 -12.49945 -12.44651 -12.36562 -12.33245 -12.06774 -11.82105 -11.63449 -11.34927 -11.25142 -11.21797 -11.00361 -10.93694 -10.62250 -10.52129 -10.42624 -10.35628 -10.30182 -10.05001 -9.64708 -9.55776 -8.86392 -8.65243 -8.64464 -8.40008 -7.31057 -6.15781 -4.16563 1.19554 1.25659 2.72231 3.15231 3.23297 3.31663 3.34795 3.57906 4.34437 4.35510 4.45287 4.53171 4.55043 4.70757 4.75270 4.81486 4.87524 5.00313 5.15696 5.16866 5.21997 5.34749 5.38108 5.42527 5.48500 5.51644 5.55945 5.63473 5.65954 5.69077 5.74941 5.86491 5.87377 5.90294 5.94204 5.97264 5.99604 6.04525 6.10613 6.28621 6.33851 6.37436 6.43872 6.47934 6.59658 6.69983 6.73120 6.86585 6.88902 6.98875 7.46315 7.62883 7.94180 7.96757 8.33642 8.37885 8.85819 9.46521 10.97029 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.003447 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.845315 B = 8121.482099 C = 8758.455878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C -0.124 4.124 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.054 4.054 7 C -0.068 4.068 8 C 0.544 3.456 9 O -0.545 6.545 10 N -0.597 5.597 11 C 0.109 3.891 12 C 0.048 3.952 13 N -0.533 5.533 14 C 0.155 3.845 15 C -0.554 4.554 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.049 3.951 24 C 0.115 3.885 25 C -0.109 4.109 26 C -0.139 4.139 27 C -0.131 4.131 28 C -0.117 4.117 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.096 0.904 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 15.763 -15.184 22.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.129 4.129 5 C -0.132 4.132 6 C -0.054 4.054 7 C -0.072 4.072 8 C 0.331 3.669 9 O -0.423 6.423 10 N -0.329 5.329 11 C -0.014 4.014 12 C -0.081 4.081 13 N -0.256 5.256 14 C 0.028 3.972 15 C -0.592 4.592 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.080 4.080 24 C -0.007 4.007 25 C -0.147 4.147 26 C -0.176 4.176 27 C -0.169 4.169 28 C -0.135 4.135 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.091 0.909 50 H 0.098 0.902 51 H 0.114 0.886 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.522 15.961 -15.099 22.252 hybrid contribution -0.292 -0.762 0.943 1.247 sum -3.815 15.199 -14.156 21.117 Atomic orbital electron populations 1.20800 0.91132 1.02691 1.02542 1.19873 0.96031 0.92960 0.99351 1.21003 0.94184 0.97492 1.01516 1.21077 0.94273 0.97765 0.99822 1.20956 0.99896 0.91937 1.00434 1.19347 0.93306 0.93160 0.99602 1.20903 0.96212 0.93541 0.96497 1.19663 0.88463 0.75967 0.82761 1.90654 1.19799 1.49573 1.82274 1.48020 1.08323 1.70725 1.05819 1.22212 0.80855 1.00149 0.98177 1.22357 0.96873 0.97436 0.91421 1.62403 1.01123 1.55546 1.06570 1.20195 0.96217 0.91732 0.89060 1.21666 1.47859 0.90183 0.99505 0.90853 1.24966 0.94499 0.94755 0.98737 1.69927 1.48419 1.00162 1.35002 0.86797 0.79225 0.78704 0.84677 1.20174 1.21285 1.18830 1.22256 0.91683 0.97391 0.96658 1.21828 0.91725 0.99974 0.87186 1.22826 1.02473 0.95863 0.93512 1.22824 0.98968 0.96454 0.99378 1.23163 0.97818 0.94477 1.01399 1.21011 0.93183 0.97955 1.01362 0.90933 0.91644 0.91526 0.86270 0.86153 0.86438 0.91432 0.89576 0.93240 0.90481 0.95212 0.95584 0.92632 0.93354 0.90412 0.89417 0.91430 0.89498 0.89808 0.89639 0.90895 0.90186 0.88562 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.46 16 2 C -0.08 -0.78 5.88 -104.63 -0.62 -1.39 16 3 C -0.12 -1.16 9.72 -39.58 -0.38 -1.54 16 4 C -0.11 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.11 -1.32 9.33 -39.58 -0.37 -1.69 16 6 C -0.05 -0.62 3.53 -104.63 -0.37 -0.99 16 7 C -0.07 -0.87 0.51 -156.00 -0.08 -0.94 16 8 C 0.54 8.71 5.94 -10.99 -0.07 8.64 16 9 O -0.55 -10.24 15.35 5.55 0.09 -10.16 16 10 N -0.60 -9.55 3.00 -172.18 -0.52 -10.07 16 11 C 0.11 1.63 5.44 -3.36 -0.02 1.61 16 12 C 0.05 0.88 5.19 -3.46 -0.02 0.86 16 13 N -0.53 -10.62 4.83 -235.47 -1.14 -11.76 16 14 C 0.15 3.58 4.17 -4.98 -0.02 3.56 16 15 C -0.55 -15.00 8.32 -34.44 -0.29 -15.29 16 16 H 0.07 2.19 6.11 -52.48 -0.32 1.87 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 19 Si 0.88 20.96 27.45 -169.99 -4.67 16.30 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.26 -6.05 6.57 56.52 0.37 -5.68 16 23 C 0.05 0.94 5.23 -3.71 -0.02 0.92 16 24 C 0.12 1.90 6.61 -3.60 -0.02 1.88 16 25 C -0.11 -1.27 7.04 -25.92 -0.18 -1.45 16 26 C -0.14 -1.62 7.81 -25.91 -0.20 -1.82 16 27 C -0.13 -1.53 5.48 -25.91 -0.14 -1.67 16 28 C -0.12 -1.20 7.55 -39.58 -0.30 -1.50 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.40 8.12 -51.93 -0.42 -0.03 16 31 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.12 1.43 7.92 -52.49 -0.42 1.01 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.14 3.34 -51.93 -0.17 0.96 16 37 H 0.05 1.04 6.77 -51.93 -0.35 0.68 16 38 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 39 H 0.03 0.70 7.21 -51.93 -0.37 0.33 16 40 H 0.03 0.60 7.51 -51.93 -0.39 0.21 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.05 1.07 6.93 -51.93 -0.36 0.71 16 43 H 0.08 1.43 8.07 -51.92 -0.42 1.01 16 44 H 0.09 1.47 7.04 -51.93 -0.37 1.10 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 47 H 0.08 1.09 7.37 -51.93 -0.38 0.71 16 48 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.08 1.07 7.46 -51.93 -0.39 0.69 16 51 H 0.10 0.90 6.06 -51.93 -0.31 0.59 16 52 H 0.13 1.16 5.83 -52.48 -0.31 0.86 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -31.30 393.75 -11.12 -42.42 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.37 Total: 4.31 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -3.23 Total: -10.83 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.88 Total: -47.97 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.30 -11.12 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207336.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.897 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds