Wall clock time and date at job start Sat Apr 11 2020 06:45:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38255 * 120.00029 * 2 1
4 4 C 1.38212 * 119.99979 * 180.27836 * 3 2 1
5 5 C 1.38258 * 120.00146 * 359.73397 * 4 3 2
6 6 C 1.38212 * 119.99799 * 359.97438 * 5 4 3
7 7 C 1.50698 * 120.00030 * 179.97438 * 6 5 4
8 8 C 1.50696 * 112.85275 * 51.71327 * 7 6 5
9 9 O 1.21291 * 120.00175 * 236.87124 * 8 7 6
10 10 N 1.34780 * 119.99839 * 56.86738 * 8 7 6
11 11 C 1.47075 * 120.88206 * 5.29322 * 10 8 7
12 12 C 1.53700 * 108.27676 * 128.75185 * 11 10 8
13 13 N 1.46902 * 109.25578 * 54.08371 * 12 11 10
14 14 C 1.46899 * 110.99567 * 172.60690 * 13 12 11
15 15 C 1.50694 * 109.47423 * 60.39981 * 14 13 12
16 16 H 1.08003 * 119.99686 * 1.01557 * 15 14 13
17 17 C 1.37879 * 120.00334 * 181.01916 * 15 14 13
18 18 N 1.31505 * 120.00086 * 179.97438 * 17 15 14
19 19 Si 1.86800 * 119.99752 * 359.97438 * 17 15 14
20 20 H 1.48504 * 109.47274 * 89.99789 * 19 17 15
21 21 H 1.48502 * 109.47398 * 210.00100 * 19 17 15
22 22 H 1.48501 * 109.47027 * 330.00218 * 19 17 15
23 23 C 1.46892 * 111.26627 * 296.75508 * 13 12 11
24 24 C 1.47081 * 120.87968 * 185.56597 * 10 8 7
25 25 C 1.53783 * 113.61463 * 280.41056 * 7 6 5
26 26 C 1.53783 * 87.08289 * 220.01863 * 25 7 6
27 27 C 1.53784 * 113.61519 * 182.91204 * 7 6 5
28 28 C 1.38216 * 120.00148 * 179.73578 * 2 1 3
29 29 H 1.09002 * 109.47508 * 275.23598 * 1 2 3
30 30 H 1.08999 * 109.47084 * 35.24069 * 1 2 3
31 31 H 1.09001 * 109.47081 * 155.23670 * 1 2 3
32 32 H 1.08000 * 120.00101 * 0.03208 * 3 2 1
33 33 H 1.08006 * 120.00019 * 179.76183 * 4 3 2
34 34 H 1.08000 * 120.00282 * 180.02562 * 5 4 3
35 35 H 1.09002 * 109.62614 * 248.52185 * 11 10 8
36 36 H 1.09004 * 109.62575 * 9.09840 * 11 10 8
37 37 H 1.09000 * 109.64510 * 294.07953 * 12 11 10
38 38 H 1.08999 * 109.41777 * 173.94981 * 12 11 10
39 39 H 1.09007 * 109.46374 * 180.39794 * 14 13 12
40 40 H 1.09000 * 109.47392 * 300.39042 * 14 13 12
41 41 H 0.97007 * 119.99750 * 179.97438 * 18 17 15
42 42 H 1.08995 * 109.49939 * 303.14519 * 23 13 12
43 43 H 1.09009 * 109.49440 * 183.06375 * 23 13 12
44 44 H 1.09000 * 109.63175 * 350.89968 * 24 10 8
45 45 H 1.09003 * 109.62388 * 111.28501 * 24 10 8
46 46 H 1.09002 * 113.60962 * 334.56220 * 25 7 6
47 47 H 1.08993 * 113.61738 * 105.47086 * 25 7 6
48 48 H 1.09000 * 113.61385 * 270.88609 * 26 25 7
49 49 H 1.08994 * 113.61918 * 139.97557 * 26 25 7
50 50 H 1.09000 * 113.61238 * 254.52293 * 27 7 6
51 51 H 1.08996 * 113.61441 * 25.42760 * 27 7 6
52 52 H 1.08004 * 120.00020 * 0.02562 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1973 0.0000
4 6 3.5804 1.1973 -0.0058
5 6 4.2717 0.0000 -0.0061
6 6 3.5806 -1.1970 0.0000
7 6 4.3341 -2.5021 -0.0008
8 6 5.3773 -2.5763 1.0841
9 8 6.5363 -2.7898 0.7975
10 7 5.0223 -2.4054 2.3731
11 6 3.6092 -2.2607 2.7541
12 6 3.3094 -3.2602 3.8826
13 7 4.2704 -3.0596 4.9754
14 6 3.9138 -3.8725 6.1458
15 6 3.9235 -5.3309 5.7663
16 1 4.1858 -5.6255 4.7609
17 6 3.5973 -6.2891 6.7026
18 7 3.6052 -7.5617 6.3712
19 14 3.1441 -5.7795 8.4416
20 1 1.6785 -5.5546 8.5256
21 1 3.5353 -6.8532 9.3900
22 1 3.8580 -4.5254 8.7919
23 6 5.6433 -3.3427 4.5362
24 6 6.0383 -2.3527 3.4352
25 6 4.8557 -2.9113 -1.3884
26 6 4.4545 -4.3514 -1.0277
27 6 3.4231 -3.7393 -0.0652
28 6 2.1981 -1.1970 0.0055
29 1 -0.3634 0.0938 1.0234
30 1 -0.3633 0.8393 -0.5930
31 1 -0.3633 -0.9332 -0.4305
32 1 1.6583 2.1326 0.0005
33 1 4.1204 2.1327 -0.0097
34 1 5.3517 0.0000 -0.0102
35 1 3.4262 -1.2443 3.1028
36 1 2.9743 -2.4757 1.8945
37 1 3.3972 -4.2783 3.5033
38 1 2.2977 -3.0957 4.2531
39 1 4.6376 -3.6995 6.9423
40 1 2.9187 -3.5937 6.4923
41 1 3.3760 -8.2358 7.0301
42 1 5.6987 -4.3596 4.1479
43 1 6.3243 -3.2379 5.3809
44 1 7.0103 -2.6286 3.0263
45 1 6.0868 -1.3441 3.8458
46 1 4.2795 -2.4911 -2.2128
47 1 5.9303 -2.7746 -1.5087
48 1 5.2428 -4.9113 -0.5246
49 1 4.0066 -4.9004 -1.8560
50 1 3.3413 -4.2711 0.8828
51 1 2.4553 -3.5454 -0.5277
52 1 1.6581 -2.1323 0.0094
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602207336.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:59
Heat of formation + Delta-G solvation = 5.207038 kcal
Electronic energy + Delta-G solvation = -31574.339220 eV
Core-core repulsion = 27731.600197 eV
Total energy + Delta-G solvation = -3842.739023 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-42.42786 -40.20102 -39.37860 -38.13680 -36.09318 -34.37936 -33.67116 -32.45343
-31.80640 -30.47119 -28.24732 -27.60646 -26.65831 -26.64146 -24.59970 -24.03128
-23.08409 -22.61314 -21.69152 -21.02264 -19.51765 -18.78554 -18.10160 -17.57864
-17.21448 -16.60032 -16.53863 -16.16468 -15.99970 -15.91909 -15.88036 -15.58111
-15.09138 -14.77530 -14.59446 -14.45393 -14.29005 -13.99698 -13.92555 -13.85032
-13.40538 -13.30265 -13.06253 -13.00716 -12.90520 -12.65564 -12.51269 -12.42198
-12.25794 -12.20250 -12.00456 -11.98499 -11.90969 -11.82608 -11.66730 -11.41242
-11.29619 -10.85538 -10.80505 -9.80541 -9.63898 -9.44119 -9.07436 -8.32987
-6.39319 0.41364 0.50285 1.35815 1.37876 1.45620 1.49449 1.89240
2.32949 2.79522 3.02517 3.18748 3.34510 3.45053 3.52879 3.62573
3.80398 3.95150 4.02382 4.06223 4.09367 4.20397 4.26440 4.28337
4.36603 4.46284 4.52566 4.54642 4.59287 4.69028 4.70336 4.74381
4.80343 4.83674 4.91025 4.94469 4.96889 4.99667 5.01197 5.02382
5.04619 5.07066 5.14124 5.18754 5.34274 5.37240 5.42815 5.45687
5.59628 5.67439 5.74512 6.00020 6.13325 6.25243 6.27897 6.37625
6.67109 7.03832 7.27986 8.83449
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.012616 B = 0.003447 C = 0.003196
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2218.845315 B = 8121.482099 C = 8758.455878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.082 4.082
3 C -0.124 4.124
4 C -0.114 4.114
5 C -0.131 4.131
6 C -0.063 4.063
7 C -0.067 4.067
8 C 0.539 3.461
9 O -0.580 6.580
10 N -0.602 5.602
11 C 0.124 3.876
12 C 0.050 3.950
13 N -0.523 5.523
14 C 0.161 3.839
15 C -0.551 4.551
16 H 0.028 0.972
17 C 0.012 3.988
18 N -0.948 5.948
19 Si 0.952 3.048
20 H -0.263 1.263
21 H -0.288 1.288
22 H -0.244 1.244
23 C 0.055 3.945
24 C 0.123 3.877
25 C -0.102 4.102
26 C -0.141 4.141
27 C -0.125 4.125
28 C -0.122 4.122
29 H 0.076 0.924
30 H 0.078 0.922
31 H 0.073 0.927
32 H 0.142 0.858
33 H 0.136 0.864
34 H 0.102 0.898
35 H 0.083 0.917
36 H 0.106 0.894
37 H 0.012 0.988
38 H 0.089 0.911
39 H 0.033 0.967
40 H 0.038 0.962
41 H 0.266 0.734
42 H 0.005 0.995
43 H 0.084 0.916
44 H 0.081 0.919
45 H 0.090 0.910
46 H 0.112 0.888
47 H 0.064 0.936
48 H 0.054 0.946
49 H 0.098 0.902
50 H 0.056 0.944
51 H 0.128 0.872
52 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.544 18.762 -15.130 24.975
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.082 4.082
3 C -0.142 4.142
4 C -0.132 4.132
5 C -0.149 4.149
6 C -0.063 4.063
7 C -0.070 4.070
8 C 0.328 3.672
9 O -0.461 6.461
10 N -0.334 5.334
11 C 0.001 3.999
12 C -0.079 4.079
13 N -0.246 5.246
14 C 0.033 3.967
15 C -0.590 4.590
16 H 0.046 0.954
17 C -0.187 4.187
18 N -0.588 5.588
19 Si 0.775 3.225
20 H -0.188 1.188
21 H -0.214 1.214
22 H -0.167 1.167
23 C -0.074 4.074
24 C 0.000 4.000
25 C -0.139 4.139
26 C -0.178 4.178
27 C -0.162 4.162
28 C -0.140 4.140
29 H 0.095 0.905
30 H 0.097 0.903
31 H 0.092 0.908
32 H 0.160 0.840
33 H 0.154 0.846
34 H 0.120 0.880
35 H 0.101 0.899
36 H 0.124 0.876
37 H 0.030 0.970
38 H 0.107 0.893
39 H 0.051 0.949
40 H 0.056 0.944
41 H 0.075 0.925
42 H 0.023 0.977
43 H 0.103 0.897
44 H 0.099 0.901
45 H 0.108 0.892
46 H 0.131 0.869
47 H 0.082 0.918
48 H 0.073 0.927
49 H 0.116 0.884
50 H 0.075 0.925
51 H 0.146 0.854
52 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -5.983 18.988 -15.060 24.963
hybrid contribution 0.510 -1.711 0.832 1.970
sum -5.473 17.276 -14.228 23.041
Atomic orbital electron populations
1.20856 0.89373 1.03761 1.03153 1.20181 0.97333 0.92586 0.98135
1.21320 0.93937 0.98550 1.00395 1.21289 0.94896 0.97757 0.99239
1.20947 0.99321 0.92830 1.01840 1.19233 0.93835 0.92141 1.01091
1.20833 0.95631 0.94997 0.95564 1.20330 0.88838 0.74735 0.83312
1.90628 1.21600 1.51025 1.82828 1.48137 1.08686 1.70612 1.05943
1.22163 0.80490 0.99627 0.97582 1.22400 0.97135 0.96510 0.91878
1.62446 1.01677 1.53978 1.06478 1.20087 0.96853 0.89343 0.90390
1.21865 1.46874 0.92693 0.97576 0.95411 1.25944 0.94482 0.94489
1.03740 1.70091 1.50271 1.01688 1.36794 0.85647 0.79632 0.78891
0.78373 1.18789 1.21375 1.16731 1.22212 0.91665 0.95873 0.97654
1.21704 0.91645 1.00110 0.86528 1.22833 1.01658 0.95653 0.93805
1.22791 0.98332 0.96663 1.00018 1.23215 0.99069 0.93487 1.00466
1.21149 0.92497 0.99003 1.01356 0.90493 0.90297 0.90802 0.84003
0.84605 0.88026 0.89922 0.87620 0.96955 0.89308 0.94913 0.94401
0.92530 0.97662 0.89749 0.90089 0.89153 0.86946 0.91751 0.92724
0.88363 0.92537 0.85376 0.84302
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.21 10.01 71.24 0.71 -0.49 16
2 C -0.08 -1.27 5.88 -19.87 -0.12 -1.39 16
3 C -0.12 -1.89 9.72 22.27 0.22 -1.67 16
4 C -0.11 -2.01 10.05 22.27 0.22 -1.78 16
5 C -0.13 -2.88 9.33 22.27 0.21 -2.67 16
6 C -0.06 -1.35 3.53 -19.87 -0.07 -1.42 16
7 C -0.07 -1.68 0.51 -53.15 -0.03 -1.71 16
8 C 0.54 17.78 5.94 87.66 0.52 18.31 16
9 O -0.58 -23.00 15.35 -3.06 -0.05 -23.04 16
10 N -0.60 -19.55 3.00 -817.03 -2.45 -22.00 16
11 C 0.12 3.59 5.44 86.51 0.47 4.06 16
12 C 0.05 1.83 5.19 86.54 0.45 2.28 16
13 N -0.52 -20.78 4.83 -898.89 -4.34 -25.12 16
14 C 0.16 7.36 4.17 85.56 0.36 7.72 16
15 C -0.55 -30.85 8.32 25.60 0.21 -30.63 16
16 H 0.03 1.77 6.11 -2.91 -0.02 1.75 16
17 C 0.01 0.66 5.47 84.66 0.46 1.12 16
18 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16
19 Si 0.95 42.90 27.45 68.60 1.88 44.78 16
20 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16
21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16
22 H -0.24 -10.15 6.57 99.48 0.65 -9.49 16
23 C 0.06 2.18 5.23 86.38 0.45 2.63 16
24 C 0.12 4.11 6.61 86.35 0.57 4.68 16
25 C -0.10 -2.34 7.04 31.12 0.22 -2.12 16
26 C -0.14 -3.30 7.81 31.12 0.24 -3.06 16
27 C -0.13 -2.84 5.48 31.12 0.17 -2.67 16
28 C -0.12 -2.16 7.55 22.27 0.17 -2.00 16
29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
30 H 0.08 0.63 8.12 -2.39 -0.02 0.61 16
31 H 0.07 0.68 8.05 -2.39 -0.02 0.66 16
32 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16
33 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16
34 H 0.10 2.49 7.92 -2.91 -0.02 2.47 16
35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16
36 H 0.11 2.66 3.34 -2.38 -0.01 2.66 16
37 H 0.01 0.54 6.77 -2.39 -0.02 0.52 16
38 H 0.09 3.02 8.11 -2.39 -0.02 3.00 16
39 H 0.03 1.50 7.21 -2.38 -0.02 1.48 16
40 H 0.04 1.67 7.51 -2.39 -0.02 1.65 16
41 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16
42 H 0.00 0.24 6.93 -2.39 -0.02 0.22 16
43 H 0.08 3.16 8.07 -2.38 -0.02 3.14 16
44 H 0.08 2.83 7.04 -2.39 -0.02 2.81 16
45 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16
46 H 0.11 2.01 8.09 -2.39 -0.02 1.99 16
47 H 0.06 1.74 7.37 -2.39 -0.02 1.72 16
48 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16
49 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16
50 H 0.06 1.56 7.46 -2.39 -0.02 1.54 16
51 H 0.13 2.08 6.06 -2.39 -0.01 2.07 16
52 H 0.14 2.07 5.83 -2.91 -0.02 2.05 16
Total: -1.00 -71.45 393.75 1.64 -69.81
By element:
Atomic # 1 Polarization: 24.12 SS G_CDS: 0.86 Total: 24.98 kcal
Atomic # 6 Polarization: -16.28 SS G_CDS: 5.44 Total: -10.83 kcal
Atomic # 7 Polarization: -99.20 SS G_CDS: -6.49 Total: -105.69 kcal
Atomic # 8 Polarization: -23.00 SS G_CDS: -0.05 Total: -23.04 kcal
Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal
Total: -71.45 1.64 -69.81 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602207336.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.014 kcal
(2) G-P(sol) polarization free energy of solvation -71.449 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.566 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.207 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds