Wall clock time and date at job start Sat Apr 11 2020 06:46:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50703 * 109.67602 * 2 1
4 4 O 1.21280 * 119.99752 * 119.48954 * 3 2 1
5 5 N 1.34767 * 119.99864 * 299.49171 * 3 2 1
6 6 C 1.46506 * 119.99916 * 179.97438 * 5 3 2
7 7 C 1.53038 * 109.45905 * 204.99922 * 6 5 3
8 8 C 1.53192 * 109.31127 * 178.61474 * 7 6 5
9 9 N 1.46926 * 108.77519 * 54.63381 * 8 7 6
10 10 C 1.36943 * 120.63067 * 126.36994 * 9 8 7
11 11 H 1.08001 * 119.99826 * 332.50507 * 10 9 8
12 12 C 1.38806 * 120.00307 * 152.50845 * 10 9 8
13 13 N 1.31621 * 120.00035 * 335.02108 * 12 10 9
14 14 Si 1.86796 * 120.00250 * 155.01900 * 12 10 9
15 15 H 1.48502 * 109.47206 * 0.02562 * 14 12 10
16 16 H 1.48504 * 109.47381 * 240.00094 * 14 12 10
17 17 H 1.48503 * 109.47017 * 120.00006 * 14 12 10
18 18 C 1.46924 * 118.73956 * 306.64370 * 9 8 7
19 19 C 1.52760 * 109.00872 * 53.31288 * 18 9 8
20 20 C 1.53329 * 109.70739 * 120.52692 * 2 1 3
21 21 C 1.52737 * 108.37687 * 49.88896 * 20 2 1
22 22 C 1.50629 * 110.57771 * 51.15674 * 21 20 2
23 23 C 1.38908 * 117.74697 * 162.48520 * 22 21 20
24 24 C 1.37938 * 120.54037 * 179.45659 * 23 22 21
25 25 C 1.38256 * 119.77193 * 359.97438 * 24 23 22
26 26 C 1.37923 * 119.77574 * 0.13350 * 25 24 23
27 27 C 1.37661 * 122.56555 * 342.14366 * 22 21 20
28 28 C 1.50635 * 122.56385 * 0.75111 * 27 22 21
29 29 H 1.08999 * 109.47025 * 59.99649 * 1 2 3
30 30 H 1.09004 * 109.47281 * 180.02562 * 1 2 3
31 31 H 1.09008 * 109.47351 * 299.99920 * 1 2 3
32 32 H 0.97004 * 120.00571 * 359.97438 * 5 3 2
33 33 H 1.08997 * 109.46033 * 324.97138 * 6 5 3
34 34 H 1.08996 * 109.50045 * 58.66320 * 7 6 5
35 35 H 1.08999 * 109.49720 * 298.56221 * 7 6 5
36 36 H 1.08999 * 109.58973 * 294.84823 * 8 7 6
37 37 H 1.09004 * 109.70716 * 174.48886 * 8 7 6
38 38 H 0.96998 * 119.99688 * 354.25874 * 13 12 10
39 39 H 1.09009 * 109.58597 * 173.14181 * 18 9 8
40 40 H 1.08998 * 109.58690 * 293.56823 * 18 9 8
41 41 H 1.08996 * 109.56544 * 185.55599 * 19 18 9
42 42 H 1.08999 * 109.36217 * 65.49382 * 19 18 9
43 43 H 1.09001 * 109.67956 * 169.61078 * 20 2 1
44 44 H 1.09000 * 109.68153 * 290.16346 * 20 2 1
45 45 H 1.08991 * 109.25932 * 290.86665 * 21 20 2
46 46 H 1.09000 * 109.21747 * 171.41413 * 21 20 2
47 47 H 1.07995 * 119.73108 * 359.42322 * 23 22 21
48 48 H 1.08007 * 120.11324 * 180.02562 * 24 23 22
49 49 H 1.08005 * 120.11294 * 180.15056 * 25 24 23
50 50 H 1.08004 * 119.73516 * 179.97438 * 26 25 24
51 51 H 1.08997 * 109.25101 * 221.97865 * 28 27 22
52 52 H 1.09000 * 109.22200 * 102.53735 * 28 27 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0374 1.4190 0.0000
4 8 2.7284 1.8159 0.9143
5 7 1.7233 2.2470 -1.0159
6 6 2.2161 3.6266 -1.0156
7 6 1.2816 4.5020 -1.8539
8 6 1.7806 5.9500 -1.8230
9 7 3.1837 5.9761 -2.2581
10 6 3.5827 6.7979 -3.2783
11 1 2.8798 7.0859 -4.0460
12 6 4.8905 7.2607 -3.3258
13 7 5.5984 7.3476 -2.2195
14 14 5.6458 7.7600 -4.9596
15 1 4.6495 7.5701 -6.0442
16 1 6.8397 6.9194 -5.2306
17 1 6.0487 9.1883 -4.9027
18 6 4.1495 5.0993 -1.5819
19 6 3.6251 3.6648 -1.6119
20 6 2.0470 -0.7332 1.2434
21 6 1.3303 -2.0783 1.3421
22 6 1.4205 -2.8233 0.0360
23 6 1.1595 -4.1876 0.0504
24 6 1.2147 -4.9241 -1.1146
25 6 1.5317 -4.3001 -2.3069
26 6 1.7933 -2.9460 -2.3229
27 6 1.7409 -2.2029 -1.1503
28 6 2.0443 -0.7301 -1.2390
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.1708 1.9295 -1.7473
33 1 2.2446 4.0019 0.0073
34 1 0.2734 4.4557 -1.4425
35 1 1.2721 4.1424 -2.8829
36 1 1.7054 6.3408 -0.8083
37 1 1.1781 6.5608 -2.4954
38 1 5.1820 7.1684 -1.3620
39 1 5.1091 5.1469 -2.0968
40 1 4.2714 5.4193 -0.5471
41 1 4.2846 3.0228 -1.0281
42 1 3.5934 3.3132 -2.6431
43 1 3.1212 -0.8952 1.1538
44 1 1.8378 -0.1395 2.1332
45 1 0.2820 -1.9099 1.5882
46 1 1.7928 -2.6745 2.1286
47 1 0.9120 -4.6758 0.9813
48 1 1.0102 -5.9844 -1.0956
49 1 1.5741 -4.8710 -3.2228
50 1 2.0413 -2.4592 -3.2546
51 1 1.5631 -0.3168 -2.1253
52 1 3.1224 -0.5899 -1.3171
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000610292600.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:32
Heat of formation + Delta-G solvation = -32.016520 kcal
Electronic energy + Delta-G solvation = -30460.413715 eV
Core-core repulsion = 26616.060557 eV
Total energy + Delta-G solvation = -3844.353158 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 1.39 seconds
Orbital eigenvalues (eV)
-41.98968 -40.52215 -39.24560 -37.31230 -36.24351 -34.20417 -33.47395 -32.20776
-31.81487 -30.96297 -29.88962 -28.01748 -26.89017 -25.12623 -24.35004 -23.97859
-23.11659 -23.01548 -21.55155 -21.05571 -19.64675 -19.24809 -18.01444 -17.50960
-17.08601 -16.56613 -16.33302 -16.09242 -15.81137 -15.56636 -15.49524 -15.36523
-15.28246 -15.15573 -14.95726 -14.51202 -14.13959 -14.06226 -13.82936 -13.69259
-13.50980 -13.12051 -13.05824 -12.93466 -12.88502 -12.63027 -12.47989 -12.31379
-12.22898 -12.11270 -11.92700 -11.89569 -11.82440 -11.72912 -11.63959 -11.33778
-11.28889 -10.67320 -10.49926 -10.07972 -9.61977 -9.43353 -8.98369 -8.27383
-5.42313 0.48431 0.50865 1.58174 1.59437 1.66307 1.81955 2.11456
2.64969 2.87233 3.20006 3.38656 3.49536 3.56081 3.73670 3.76943
3.93281 3.98455 4.05137 4.07802 4.14488 4.20472 4.26392 4.29527
4.37100 4.48122 4.49867 4.56624 4.62815 4.63815 4.71893 4.73043
4.83562 4.85428 4.89698 4.91726 4.95803 4.99317 5.01246 5.06101
5.12566 5.13385 5.14395 5.18978 5.27897 5.36049 5.38937 5.48596
5.63239 5.67363 5.77570 5.83401 6.16645 6.35795 6.55108 7.02178
7.24183 7.74909 8.20068 8.98448
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.018975 B = 0.002371 C = 0.002250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1475.249307 B =11804.322283 C =12443.034326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.066 4.066
3 C 0.519 3.481
4 O -0.584 6.584
5 N -0.707 5.707
6 C 0.163 3.837
7 C -0.121 4.121
8 C 0.143 3.857
9 N -0.617 5.617
10 C -0.352 4.352
11 H 0.058 0.942
12 C -0.081 4.081
13 N -0.946 5.946
14 Si 1.120 2.880
15 H -0.268 1.268
16 H -0.290 1.290
17 H -0.292 1.292
18 C 0.162 3.838
19 C -0.125 4.125
20 C -0.095 4.095
21 C -0.075 4.075
22 C -0.085 4.085
23 C -0.128 4.128
24 C -0.128 4.128
25 C -0.130 4.130
26 C -0.130 4.130
27 C -0.083 4.083
28 C -0.065 4.065
29 H 0.073 0.927
30 H 0.084 0.916
31 H 0.060 0.940
32 H 0.413 0.587
33 H 0.057 0.943
34 H 0.093 0.907
35 H 0.074 0.926
36 H 0.012 0.988
37 H 0.064 0.936
38 H 0.252 0.748
39 H 0.046 0.954
40 H -0.005 1.005
41 H 0.047 0.953
42 H 0.063 0.937
43 H 0.051 0.949
44 H 0.067 0.933
45 H 0.094 0.906
46 H 0.087 0.913
47 H 0.137 0.863
48 H 0.140 0.860
49 H 0.138 0.862
50 H 0.130 0.870
51 H 0.096 0.904
52 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.189 -26.380 1.760 30.491
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.069 4.069
3 C 0.307 3.693
4 O -0.463 6.463
5 N -0.358 5.358
6 C 0.058 3.942
7 C -0.160 4.160
8 C 0.017 3.983
9 N -0.341 5.341
10 C -0.481 4.481
11 H 0.076 0.924
12 C -0.277 4.277
13 N -0.588 5.588
14 Si 0.944 3.056
15 H -0.193 1.193
16 H -0.216 1.216
17 H -0.219 1.219
18 C 0.035 3.965
19 C -0.165 4.165
20 C -0.133 4.133
21 C -0.112 4.112
22 C -0.085 4.085
23 C -0.145 4.145
24 C -0.146 4.146
25 C -0.148 4.148
26 C -0.148 4.148
27 C -0.083 4.083
28 C -0.102 4.102
29 H 0.092 0.908
30 H 0.102 0.898
31 H 0.079 0.921
32 H 0.250 0.750
33 H 0.075 0.925
34 H 0.112 0.888
35 H 0.093 0.907
36 H 0.030 0.970
37 H 0.083 0.917
38 H 0.062 0.938
39 H 0.064 0.936
40 H 0.013 0.987
41 H 0.066 0.934
42 H 0.082 0.918
43 H 0.070 0.930
44 H 0.086 0.914
45 H 0.113 0.887
46 H 0.105 0.895
47 H 0.155 0.845
48 H 0.158 0.842
49 H 0.156 0.844
50 H 0.148 0.852
51 H 0.114 0.886
52 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -13.351 -25.558 1.648 28.882
hybrid contribution -0.930 -0.068 0.771 1.210
sum -14.281 -25.626 2.420 29.437
Atomic orbital electron populations
1.21926 0.90366 1.04068 1.03121 1.20719 0.98735 0.89362 0.98101
1.21108 0.78968 0.88217 0.81039 1.90692 1.39909 1.77989 1.37736
1.46029 1.53398 1.11598 1.24800 1.20607 0.93013 0.81628 0.98975
1.22112 0.98534 0.95100 1.00258 1.21035 0.85129 0.95207 0.96922
1.44398 1.04806 1.44602 1.40338 1.20291 0.99074 1.26513 1.02242
0.92406 1.27269 0.96574 0.97702 1.06108 1.70847 1.40883 1.48827
0.98250 0.82811 0.75312 0.75863 0.71608 1.19311 1.21616 1.21918
1.20593 0.93462 0.88864 0.93550 1.22127 0.96962 0.96966 1.00476
1.21365 0.99634 0.95863 0.96435 1.20540 1.02076 0.94152 0.94412
1.19769 0.99757 0.94377 0.94584 1.21400 1.00506 0.93234 0.99400
1.21379 0.99737 1.00851 0.92590 1.21340 0.99720 0.94661 0.99064
1.21355 1.00616 0.94853 0.97927 1.19512 1.00603 0.94762 0.93386
1.20468 1.01088 0.91661 0.97020 0.90760 0.89769 0.92089 0.75020
0.92458 0.88839 0.90700 0.97010 0.91722 0.93780 0.93577 0.98715
0.93393 0.91784 0.92980 0.91441 0.88747 0.89484 0.84507 0.84209
0.84449 0.85248 0.88588 0.91669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.00 7.64 71.98 0.55 -1.45 16
2 C -0.07 -1.30 0.63 -52.91 -0.03 -1.33 16
3 C 0.52 14.43 6.44 87.66 0.56 14.99 16
4 O -0.58 -22.03 15.51 -3.03 -0.05 -22.07 16
5 N -0.71 -17.92 4.89 -442.40 -2.16 -20.08 16
6 C 0.16 5.42 2.42 45.02 0.11 5.53 16
7 C -0.12 -3.68 5.55 30.67 0.17 -3.51 16
8 C 0.14 5.79 6.52 86.36 0.56 6.35 16
9 N -0.62 -31.21 2.86 -699.92 -2.00 -33.21 16
10 C -0.35 -19.66 9.49 84.03 0.80 -18.86 16
11 H 0.06 3.17 7.94 -2.91 -0.02 3.15 16
12 C -0.08 -4.66 4.68 84.86 0.40 -4.26 16
13 N -0.95 -59.32 12.41 21.65 0.27 -59.05 16
14 Si 1.12 51.41 29.99 68.60 2.06 53.47 16
15 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
16 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16
17 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
18 C 0.16 8.10 4.66 86.22 0.40 8.50 16
19 C -0.13 -4.98 5.64 30.53 0.17 -4.81 16
20 C -0.09 -1.95 4.39 30.62 0.13 -1.81 16
21 C -0.08 -1.10 5.07 29.74 0.15 -0.95 16
22 C -0.08 -1.35 5.02 -19.86 -0.10 -1.45 16
23 C -0.13 -1.74 9.61 22.36 0.21 -1.52 16
24 C -0.13 -1.63 10.05 22.20 0.22 -1.40 16
25 C -0.13 -1.76 10.05 22.20 0.22 -1.54 16
26 C -0.13 -2.02 9.61 22.36 0.21 -1.80 16
27 C -0.08 -1.41 5.31 -19.86 -0.11 -1.52 16
28 C -0.07 -1.16 4.27 29.74 0.13 -1.04 16
29 H 0.07 0.89 7.61 -2.39 -0.02 0.87 16
30 H 0.08 1.07 5.57 -2.39 -0.01 1.06 16
31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16
32 H 0.41 7.60 7.68 -92.71 -0.71 6.89 16
33 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16
34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16
35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16
37 H 0.06 2.54 7.93 -2.38 -0.02 2.52 16
38 H 0.25 16.30 6.71 -92.71 -0.62 15.67 16
39 H 0.05 2.61 6.30 -2.38 -0.02 2.59 16
40 H -0.01 -0.27 7.87 -2.39 -0.02 -0.29 16
41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
42 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16
43 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16
44 H 0.07 1.54 7.80 -2.39 -0.02 1.52 16
45 H 0.09 1.11 6.81 -2.39 -0.02 1.10 16
46 H 0.09 1.10 8.13 -2.39 -0.02 1.08 16
47 H 0.14 1.31 8.05 -2.91 -0.02 1.28 16
48 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16
49 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16
50 H 0.13 1.69 8.05 -2.91 -0.02 1.67 16
51 H 0.10 1.36 7.79 -2.39 -0.02 1.35 16
52 H 0.06 1.39 8.11 -2.39 -0.02 1.37 16
Total: -1.00 -73.72 397.00 3.23 -70.48
By element:
Atomic # 1 Polarization: 22.02 SS G_CDS: 0.34 Total: 22.36 kcal
Atomic # 6 Polarization: -16.66 SS G_CDS: 4.77 Total: -11.89 kcal
Atomic # 7 Polarization: -108.46 SS G_CDS: -3.89 Total: -112.35 kcal
Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.07 kcal
Atomic # 14 Polarization: 51.41 SS G_CDS: 2.06 Total: 53.47 kcal
Total: -73.72 3.23 -70.48 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610292600.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.468 kcal
(2) G-P(sol) polarization free energy of solvation -73.716 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.39 seconds