Wall clock time and date at job start Sat Apr 11 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 120.00499 * 2 1 4 4 C 1.38232 * 120.00578 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00339 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99782 * 0.02562 * 4 3 2 7 7 C 1.38241 * 120.00045 * 359.95568 * 6 4 3 8 8 C 1.50697 * 119.99864 * 180.02562 * 7 6 4 9 9 C 1.50697 * 115.55254 * 297.41164 * 8 7 6 10 10 O 1.21281 * 120.00197 * 113.78186 * 9 8 7 11 11 N 1.34775 * 120.00030 * 293.78927 * 9 8 7 12 12 C 1.47024 * 125.65238 * 185.07184 * 11 9 8 13 13 C 1.54323 * 107.27591 * 178.89038 * 12 11 9 14 14 H 1.09000 * 110.71858 * 96.16632 * 13 12 11 15 15 C 1.52994 * 110.87499 * 219.37300 * 13 12 11 16 16 C 1.55160 * 102.93975 * 337.81002 * 13 12 11 17 17 H 1.09006 * 111.00279 * 277.42514 * 16 13 12 18 18 N 1.46501 * 111.00274 * 153.61152 * 16 13 12 19 19 C 1.36940 * 120.00025 * 154.17468 * 18 16 13 20 20 H 1.08002 * 119.99758 * 6.17222 * 19 18 16 21 21 C 1.38813 * 120.00190 * 186.17739 * 19 18 16 22 22 N 1.31614 * 119.99811 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47427 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47055 * 119.99888 * 23 21 19 26 26 H 1.48495 * 109.46857 * 239.99421 * 23 21 19 27 27 C 1.47430 * 125.64725 * 5.01504 * 11 9 8 28 28 C 1.52998 * 117.49746 * 83.08445 * 8 7 6 29 29 C 1.53004 * 117.49822 * 151.74567 * 8 7 6 30 30 C 1.38233 * 120.00042 * 0.27430 * 7 6 4 31 31 H 1.09001 * 109.47219 * 89.99623 * 1 2 3 32 32 H 1.08998 * 109.47142 * 210.00121 * 1 2 3 33 33 H 1.09002 * 109.46790 * 330.00434 * 1 2 3 34 34 H 1.07998 * 119.99445 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.47483 * 274.89186 * 5 4 3 36 36 H 1.08999 * 109.46852 * 34.89337 * 5 4 3 37 37 H 1.08999 * 109.47225 * 154.89135 * 5 4 3 38 38 H 1.07995 * 120.00245 * 179.97438 * 6 4 3 39 39 H 1.09003 * 109.87767 * 59.47533 * 12 11 9 40 40 H 1.08997 * 109.88120 * 298.31555 * 12 11 9 41 41 H 1.08997 * 109.47092 * 173.60914 * 15 13 12 42 42 H 1.08999 * 109.47273 * 293.61577 * 15 13 12 43 43 H 1.09008 * 109.47100 * 53.61273 * 15 13 12 44 44 H 0.96994 * 120.00059 * 334.17995 * 18 16 13 45 45 H 0.97004 * 120.00360 * 180.02562 * 22 21 19 46 46 H 1.08994 * 110.36498 * 85.34091 * 27 11 9 47 47 H 1.08991 * 110.36728 * 323.01450 * 27 11 9 48 48 H 1.09008 * 117.49708 * 215.00101 * 28 8 7 49 49 H 1.08997 * 117.50016 * 0.02562 * 28 8 7 50 50 H 1.08997 * 117.49563 * 359.96931 * 29 8 7 51 51 H 1.08997 * 117.50113 * 144.99397 * 29 8 7 52 52 H 1.07998 * 120.00473 * 179.72462 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3341 2.5022 0.0000 6 6 4.2717 0.0000 0.0005 7 6 3.5805 -1.1972 0.0009 8 6 4.3340 -2.5023 0.0015 9 6 5.2012 -2.7527 -1.2052 10 8 6.4072 -2.7996 -1.0861 11 7 4.6365 -2.9244 -2.4169 12 6 5.3503 -3.2784 -3.6525 13 6 4.2963 -3.3930 -4.7739 14 1 4.2313 -2.4629 -5.3386 15 6 4.6136 -4.5668 -5.7025 16 6 2.9823 -3.6524 -3.9905 17 1 2.8826 -4.7069 -3.7330 18 7 1.8183 -3.1876 -4.7489 19 6 0.5908 -3.7561 -4.5361 20 1 0.4595 -4.4757 -3.7415 21 6 -0.4846 -3.4077 -5.3417 22 7 -0.3246 -2.5305 -6.3097 23 14 -2.1591 -4.1828 -5.0508 24 1 -2.0748 -5.1298 -3.9101 25 1 -3.1492 -3.1203 -4.7406 26 1 -2.5843 -4.9147 -6.2709 27 6 3.2006 -2.7895 -2.7226 28 6 4.8286 -3.0318 1.3490 29 6 3.6518 -3.7116 0.6444 30 6 2.1982 -1.1972 -0.0044 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8901 0.5138 34 1 1.6582 2.1324 -0.0004 35 1 4.4403 2.8600 -1.0241 36 1 3.7856 3.2387 0.5871 37 1 5.3215 2.3518 0.4365 38 1 5.3517 -0.0001 0.0005 39 1 5.8611 -4.2329 -3.5250 40 1 6.0717 -2.4997 -3.8999 41 1 3.7989 -4.6971 -6.4148 42 1 5.5388 -4.3636 -6.2418 43 1 4.7292 -5.4760 -5.1124 44 1 1.9171 -2.4772 -5.4019 45 1 -1.0762 -2.2867 -6.8725 46 1 2.9522 -1.7478 -2.9253 47 1 2.5996 -3.1700 -1.8968 48 1 5.7813 -3.5614 1.3627 49 1 4.6086 -2.4365 2.2352 50 1 2.6583 -3.5630 1.0673 51 1 3.8303 -4.6882 0.1945 52 1 1.6581 -2.1325 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939767114.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:46:56 Heat of formation + Delta-G solvation = 15.959633 kcal Electronic energy + Delta-G solvation = -31130.435516 eV Core-core repulsion = 27288.162760 eV Total energy + Delta-G solvation = -3842.272756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.59478 -39.20560 -37.84981 -36.31790 -34.07667 -33.47626 -32.42449 -31.52166 -30.72568 -27.56650 -27.36400 -26.78309 -26.63674 -24.34346 -23.75625 -22.54434 -21.93866 -20.77689 -20.48268 -19.86040 -18.40632 -17.21973 -16.98028 -16.26861 -15.96538 -15.57999 -15.30601 -15.11910 -14.37415 -14.10811 -13.96151 -13.76042 -13.61542 -13.19891 -13.15810 -13.09236 -12.93456 -12.88184 -12.66317 -12.54515 -12.41060 -12.03198 -11.87853 -11.70549 -11.66050 -11.60183 -11.26047 -11.12946 -11.06213 -11.02632 -10.74806 -10.63255 -10.56682 -10.34432 -10.21357 -9.97442 -9.80046 -9.64691 -9.02003 -8.50617 -8.47110 -8.31540 -7.08890 -5.87518 -3.18363 1.35862 1.44090 2.72945 3.14072 3.36027 3.42524 3.44434 3.58281 3.87053 4.44683 4.47095 4.63253 4.75384 4.80803 4.92079 4.94972 5.06578 5.15544 5.19553 5.24279 5.30105 5.39342 5.43109 5.53896 5.54312 5.55334 5.62738 5.63698 5.74362 5.75660 5.78860 5.79683 5.81395 5.84163 5.93994 5.95172 6.03409 6.03738 6.16390 6.22923 6.25598 6.26448 6.40651 6.48724 6.55283 6.59354 6.61525 6.64252 6.69998 6.87206 7.06755 7.61655 7.80582 8.29912 8.36799 9.42050 9.96094 10.31673 11.34433 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008465 B = 0.004438 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.821778 B = 6307.091068 C = 8014.227643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.121 4.121 4 C -0.083 4.083 5 C -0.112 4.112 6 C -0.113 4.113 7 C -0.035 4.035 8 C -0.113 4.113 9 C 0.568 3.432 10 O -0.551 6.551 11 N -0.604 5.604 12 C 0.116 3.884 13 C -0.116 4.116 14 H 0.083 0.917 15 C -0.133 4.133 16 C 0.177 3.823 17 H 0.068 0.932 18 N -0.708 5.708 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.006 4.006 22 N -0.928 5.928 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.079 3.921 28 C -0.136 4.136 29 C -0.154 4.154 30 C -0.108 4.108 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.102 0.898 50 H 0.107 0.893 51 H 0.101 0.899 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.663 4.046 13.328 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.083 4.083 5 C -0.169 4.169 6 C -0.131 4.131 7 C -0.036 4.036 8 C -0.116 4.116 9 C 0.356 3.644 10 O -0.430 6.430 11 N -0.336 5.336 12 C -0.007 4.007 13 C -0.136 4.136 14 H 0.101 0.899 15 C -0.190 4.190 16 C 0.064 3.936 17 H 0.086 0.914 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.735 3.265 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.047 4.047 28 C -0.173 4.173 29 C -0.191 4.191 30 C -0.126 4.126 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.125 0.875 51 H 0.120 0.880 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.153 3.919 13.460 16.217 hybrid contribution -1.003 -0.024 -0.240 1.031 sum 7.150 3.895 13.220 15.526 Atomic orbital electron populations 1.20812 0.90948 1.02383 1.03113 1.19862 0.96171 0.92794 0.98596 1.20884 0.93402 0.97572 1.02067 1.19804 0.93772 0.95011 0.99741 1.20767 0.99702 0.94095 1.02340 1.20796 0.99672 0.91263 1.01406 1.18635 0.92745 0.91584 1.00590 1.19956 1.03016 0.94571 0.94099 1.18952 0.87059 0.76173 0.82265 1.90656 1.14450 1.52520 1.85329 1.48389 1.10347 1.67632 1.07203 1.21993 0.94978 1.00100 0.83599 1.22533 0.95532 1.00084 0.95411 0.89906 1.21646 1.01317 0.96785 0.99296 1.21374 0.86628 0.96219 0.89390 0.91396 1.42272 1.03288 1.43476 1.45715 1.19259 0.86343 1.19859 1.12178 0.91050 1.24754 0.98280 0.99585 0.97655 1.69671 1.30837 1.35626 1.21386 0.86169 0.84414 0.78516 0.77384 1.20454 1.21793 1.21788 1.23486 0.78676 1.01785 1.00757 1.23035 0.99037 1.02088 0.93189 1.23130 0.98138 0.95503 1.02335 1.20895 0.93003 0.97959 1.00767 0.90382 0.91511 0.91837 0.86261 0.91184 0.91636 0.91716 0.86350 0.91698 0.92074 0.91245 0.93298 0.92985 0.77956 0.93416 0.91477 0.91183 0.87684 0.87932 0.87520 0.88022 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.01 36.00 0.36 -0.97 16 2 C -0.07 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.52 9.38 -39.58 -0.37 -1.89 16 4 C -0.08 -1.05 5.88 -104.63 -0.62 -1.67 16 5 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 6 C -0.11 -1.58 9.24 -39.58 -0.37 -1.94 16 7 C -0.04 -0.49 4.45 -104.62 -0.47 -0.96 16 8 C -0.11 -1.59 1.21 -156.81 -0.19 -1.78 16 9 C 0.57 9.56 6.98 -10.99 -0.08 9.49 16 10 O -0.55 -10.65 17.05 5.56 0.09 -10.56 16 11 N -0.60 -10.01 3.33 -170.52 -0.57 -10.57 16 12 C 0.12 1.81 6.47 -3.06 -0.02 1.79 16 13 C -0.12 -1.86 3.19 -88.79 -0.28 -2.14 16 14 H 0.08 1.39 8.01 -51.93 -0.42 0.97 16 15 C -0.13 -1.94 9.17 37.15 0.34 -1.60 16 16 C 0.18 3.29 3.16 -65.78 -0.21 3.09 16 17 H 0.07 1.30 7.99 -51.93 -0.42 0.89 16 18 N -0.71 -16.37 5.23 -51.34 -0.27 -16.64 16 19 C -0.25 -6.31 9.96 -15.06 -0.15 -6.46 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.93 -26.60 13.07 55.49 0.73 -25.88 16 23 Si 0.90 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.08 1.37 5.53 -2.53 -0.01 1.36 16 28 C -0.14 -1.61 9.76 -26.69 -0.26 -1.87 16 29 C -0.15 -1.81 9.11 -26.69 -0.24 -2.05 16 30 C -0.11 -1.48 8.05 -39.58 -0.32 -1.80 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 37 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 38 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.06 0.97 7.78 -51.93 -0.40 0.57 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.71 8.07 -51.92 -0.42 0.29 16 44 H 0.39 9.62 7.79 -40.82 -0.32 9.30 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.07 1.20 6.65 -51.93 -0.35 0.85 16 48 H 0.10 1.27 8.01 -51.92 -0.42 0.86 16 49 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.11 1.11 6.99 -51.93 -0.36 0.75 16 51 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 52 H 0.12 1.63 6.73 -52.49 -0.35 1.27 16 LS Contribution 420.25 15.07 6.33 6.33 Total: -1.00 -29.93 420.25 -10.84 -40.77 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -8.90 Total: 12.32 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.23 Total: -12.01 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.11 Total: -53.09 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -29.93 -10.84 -40.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939767114.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.731 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds