Wall clock time and date at job start Sat Apr 11 2020 06:46:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38237 * 120.00499 * 2 1
4 4 C 1.38232 * 120.00578 * 179.97438 * 3 2 1
5 5 C 1.50698 * 120.00339 * 179.97438 * 4 3 2
6 6 C 1.38235 * 119.99782 * 0.02562 * 4 3 2
7 7 C 1.38241 * 120.00045 * 359.95568 * 6 4 3
8 8 C 1.50697 * 119.99864 * 180.02562 * 7 6 4
9 9 C 1.50697 * 115.55254 * 297.41164 * 8 7 6
10 10 O 1.21281 * 120.00197 * 113.78186 * 9 8 7
11 11 N 1.34775 * 120.00030 * 293.78927 * 9 8 7
12 12 C 1.47024 * 125.65238 * 185.07184 * 11 9 8
13 13 C 1.54323 * 107.27591 * 178.89038 * 12 11 9
14 14 H 1.09000 * 110.71858 * 96.16632 * 13 12 11
15 15 C 1.52994 * 110.87499 * 219.37300 * 13 12 11
16 16 C 1.55160 * 102.93975 * 337.81002 * 13 12 11
17 17 H 1.09006 * 111.00279 * 277.42514 * 16 13 12
18 18 N 1.46501 * 111.00274 * 153.61152 * 16 13 12
19 19 C 1.36940 * 120.00025 * 154.17468 * 18 16 13
20 20 H 1.08002 * 119.99758 * 6.17222 * 19 18 16
21 21 C 1.38813 * 120.00190 * 186.17739 * 19 18 16
22 22 N 1.31614 * 119.99811 * 359.97438 * 21 19 18
23 23 Si 1.86797 * 119.99815 * 180.02562 * 21 19 18
24 24 H 1.48492 * 109.47427 * 359.97438 * 23 21 19
25 25 H 1.48506 * 109.47055 * 119.99888 * 23 21 19
26 26 H 1.48495 * 109.46857 * 239.99421 * 23 21 19
27 27 C 1.47430 * 125.64725 * 5.01504 * 11 9 8
28 28 C 1.52998 * 117.49746 * 83.08445 * 8 7 6
29 29 C 1.53004 * 117.49822 * 151.74567 * 8 7 6
30 30 C 1.38233 * 120.00042 * 0.27430 * 7 6 4
31 31 H 1.09001 * 109.47219 * 89.99623 * 1 2 3
32 32 H 1.08998 * 109.47142 * 210.00121 * 1 2 3
33 33 H 1.09002 * 109.46790 * 330.00434 * 1 2 3
34 34 H 1.07998 * 119.99445 * 359.97438 * 3 2 1
35 35 H 1.08995 * 109.47483 * 274.89186 * 5 4 3
36 36 H 1.08999 * 109.46852 * 34.89337 * 5 4 3
37 37 H 1.08999 * 109.47225 * 154.89135 * 5 4 3
38 38 H 1.07995 * 120.00245 * 179.97438 * 6 4 3
39 39 H 1.09003 * 109.87767 * 59.47533 * 12 11 9
40 40 H 1.08997 * 109.88120 * 298.31555 * 12 11 9
41 41 H 1.08997 * 109.47092 * 173.60914 * 15 13 12
42 42 H 1.08999 * 109.47273 * 293.61577 * 15 13 12
43 43 H 1.09008 * 109.47100 * 53.61273 * 15 13 12
44 44 H 0.96994 * 120.00059 * 334.17995 * 18 16 13
45 45 H 0.97004 * 120.00360 * 180.02562 * 22 21 19
46 46 H 1.08994 * 110.36498 * 85.34091 * 27 11 9
47 47 H 1.08991 * 110.36728 * 323.01450 * 27 11 9
48 48 H 1.09008 * 117.49708 * 215.00101 * 28 8 7
49 49 H 1.08997 * 117.50016 * 0.02562 * 28 8 7
50 50 H 1.08997 * 117.49563 * 359.96931 * 29 8 7
51 51 H 1.08997 * 117.50113 * 144.99397 * 29 8 7
52 52 H 1.07998 * 120.00473 * 179.72462 * 30 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5806 1.1971 0.0005
5 6 4.3341 2.5022 0.0000
6 6 4.2717 0.0000 0.0005
7 6 3.5805 -1.1972 0.0009
8 6 4.3340 -2.5023 0.0015
9 6 5.2012 -2.7527 -1.2052
10 8 6.4072 -2.7996 -1.0861
11 7 4.6365 -2.9244 -2.4169
12 6 5.3503 -3.2784 -3.6525
13 6 4.2963 -3.3930 -4.7739
14 1 4.2313 -2.4629 -5.3386
15 6 4.6136 -4.5668 -5.7025
16 6 2.9823 -3.6524 -3.9905
17 1 2.8826 -4.7069 -3.7330
18 7 1.8183 -3.1876 -4.7489
19 6 0.5908 -3.7561 -4.5361
20 1 0.4595 -4.4757 -3.7415
21 6 -0.4846 -3.4077 -5.3417
22 7 -0.3246 -2.5305 -6.3097
23 14 -2.1591 -4.1828 -5.0508
24 1 -2.0748 -5.1298 -3.9101
25 1 -3.1492 -3.1203 -4.7406
26 1 -2.5843 -4.9147 -6.2709
27 6 3.2006 -2.7895 -2.7226
28 6 4.8286 -3.0318 1.3490
29 6 3.6518 -3.7116 0.6444
30 6 2.1982 -1.1972 -0.0044
31 1 -0.3634 0.0001 -1.0277
32 1 -0.3633 -0.8900 0.5138
33 1 -0.3633 0.8901 0.5138
34 1 1.6582 2.1324 -0.0004
35 1 4.4403 2.8600 -1.0241
36 1 3.7856 3.2387 0.5871
37 1 5.3215 2.3518 0.4365
38 1 5.3517 -0.0001 0.0005
39 1 5.8611 -4.2329 -3.5250
40 1 6.0717 -2.4997 -3.8999
41 1 3.7989 -4.6971 -6.4148
42 1 5.5388 -4.3636 -6.2418
43 1 4.7292 -5.4760 -5.1124
44 1 1.9171 -2.4772 -5.4019
45 1 -1.0762 -2.2867 -6.8725
46 1 2.9522 -1.7478 -2.9253
47 1 2.5996 -3.1700 -1.8968
48 1 5.7813 -3.5614 1.3627
49 1 4.6086 -2.4365 2.2352
50 1 2.6583 -3.5630 1.0673
51 1 3.8303 -4.6882 0.1945
52 1 1.6581 -2.1325 -0.0086
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000939767114.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:55
Heat of formation + Delta-G solvation = 1.916541 kcal
Electronic energy + Delta-G solvation = -31131.044470 eV
Core-core repulsion = 27288.162760 eV
Total energy + Delta-G solvation = -3842.881710 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-41.78541 -40.36272 -39.18176 -37.47489 -35.86236 -34.41071 -33.89186 -32.56187
-32.43381 -29.18239 -28.29494 -27.95275 -27.64019 -25.92005 -25.15964 -23.48444
-23.28381 -22.09129 -21.45247 -21.29267 -19.64408 -19.12013 -18.15155 -17.45475
-17.29574 -16.89358 -16.51297 -16.21225 -16.03065 -15.41892 -15.20693 -14.96850
-14.81730 -14.60845 -14.44149 -14.37684 -14.09163 -14.02689 -13.86778 -13.66421
-13.35399 -13.23432 -13.07364 -12.90886 -12.88074 -12.87019 -12.64842 -12.57672
-12.25600 -12.18788 -12.11520 -12.03785 -12.01583 -11.72851 -11.56408 -11.44531
-11.32182 -11.00488 -10.84673 -9.74466 -9.51931 -9.47558 -9.01201 -7.92270
-5.22354 0.34199 0.42497 1.43126 1.50312 1.51906 1.60626 1.86887
2.57162 2.58226 2.83841 3.31945 3.39247 3.45452 3.70495 3.78943
3.80968 3.88740 3.93553 3.95043 4.02219 4.15749 4.20803 4.34643
4.42890 4.45154 4.45370 4.49362 4.56984 4.63309 4.63859 4.69206
4.77849 4.80278 4.84275 4.86486 4.87519 4.89492 4.94096 5.04385
5.08674 5.09821 5.12138 5.20266 5.22735 5.32697 5.34248 5.44118
5.57109 5.57455 5.62829 5.69671 6.08590 6.28349 6.44308 7.02695
7.36167 8.06163 8.31900 9.30836
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.008465 B = 0.004438 C = 0.003493
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3306.821778 B = 6307.091068 C = 8014.227643
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.084 4.084
3 C -0.129 4.129
4 C -0.086 4.086
5 C -0.111 4.111
6 C -0.132 4.132
7 C -0.039 4.039
8 C -0.133 4.133
9 C 0.566 3.434
10 O -0.579 6.579
11 N -0.605 5.605
12 C 0.117 3.883
13 C -0.106 4.106
14 H 0.074 0.926
15 C -0.127 4.127
16 C 0.172 3.828
17 H 0.068 0.932
18 N -0.717 5.717
19 C -0.237 4.237
20 H 0.079 0.921
21 C -0.064 4.064
22 N -0.966 5.966
23 Si 0.964 3.036
24 H -0.264 1.264
25 H -0.295 1.295
26 H -0.298 1.298
27 C 0.100 3.900
28 C -0.124 4.124
29 C -0.142 4.142
30 C -0.120 4.120
31 H 0.062 0.938
32 H 0.074 0.926
33 H 0.082 0.918
34 H 0.139 0.861
35 H 0.071 0.929
36 H 0.083 0.917
37 H 0.069 0.931
38 H 0.111 0.889
39 H 0.076 0.924
40 H 0.064 0.936
41 H 0.048 0.952
42 H 0.071 0.929
43 H 0.062 0.938
44 H 0.375 0.625
45 H 0.250 0.750
46 H 0.047 0.953
47 H 0.074 0.926
48 H 0.101 0.899
49 H 0.119 0.881
50 H 0.122 0.878
51 H 0.102 0.898
52 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.620 3.724 14.909 17.153
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.084 4.084
3 C -0.146 4.146
4 C -0.086 4.086
5 C -0.168 4.168
6 C -0.150 4.150
7 C -0.039 4.039
8 C -0.136 4.136
9 C 0.356 3.644
10 O -0.459 6.459
11 N -0.336 5.336
12 C -0.005 4.005
13 C -0.126 4.126
14 H 0.092 0.908
15 C -0.184 4.184
16 C 0.061 3.939
17 H 0.086 0.914
18 N -0.355 5.355
19 C -0.369 4.369
20 H 0.097 0.903
21 C -0.257 4.257
22 N -0.616 5.616
23 Si 0.793 3.207
24 H -0.188 1.188
25 H -0.222 1.222
26 H -0.225 1.225
27 C -0.026 4.026
28 C -0.161 4.161
29 C -0.179 4.179
30 C -0.138 4.138
31 H 0.081 0.919
32 H 0.093 0.907
33 H 0.101 0.899
34 H 0.157 0.843
35 H 0.090 0.910
36 H 0.102 0.898
37 H 0.088 0.912
38 H 0.129 0.871
39 H 0.095 0.905
40 H 0.082 0.918
41 H 0.067 0.933
42 H 0.090 0.910
43 H 0.081 0.919
44 H 0.207 0.793
45 H 0.059 0.941
46 H 0.065 0.935
47 H 0.093 0.907
48 H 0.119 0.881
49 H 0.137 0.863
50 H 0.140 0.860
51 H 0.121 0.879
52 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 8.139 3.571 15.079 17.503
hybrid contribution -0.886 0.095 -0.700 1.133
sum 7.254 3.666 14.379 16.517
Atomic orbital electron populations
1.20821 0.89912 1.03829 1.02469 1.20151 0.97110 0.92935 0.98228
1.21175 0.93555 0.98270 1.01647 1.20128 0.94151 0.95716 0.98641
1.20816 0.99971 0.93139 1.02848 1.20901 0.99482 0.92017 1.02578
1.18664 0.92907 0.91557 1.00819 1.19941 1.04087 0.95697 0.93894
1.19430 0.87024 0.75189 0.82797 1.90634 1.15746 1.53775 1.85769
1.48430 1.09886 1.67604 1.07702 1.22028 0.94711 1.00801 0.82985
1.22431 0.94120 1.00442 0.95558 0.90771 1.21595 1.01596 0.96478
0.98750 1.21505 0.86417 0.96097 0.89832 0.91379 1.42358 1.03958
1.43233 1.45997 1.19605 0.87189 1.18741 1.11340 0.90329 1.25453
1.01544 1.00679 0.98047 1.69815 1.31370 1.37632 1.22786 0.85218
0.80470 0.77675 0.77290 1.18775 1.22249 1.22510 1.23065 0.79354
1.00121 1.00080 1.23100 0.98928 1.01546 0.92575 1.23232 0.98917
0.94483 1.01236 1.20996 0.92973 0.98422 1.01447 0.91910 0.90725
0.89871 0.84297 0.91010 0.89777 0.91154 0.87078 0.90530 0.91809
0.93330 0.90961 0.91889 0.79292 0.94093 0.93495 0.90727 0.88073
0.86309 0.85952 0.87948 0.85489
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.46 10.01 71.23 0.71 -1.75 16
2 C -0.08 -2.13 5.88 -19.86 -0.12 -2.24 16
3 C -0.13 -3.05 9.38 22.27 0.21 -2.84 16
4 C -0.09 -2.09 5.88 -19.87 -0.12 -2.21 16
5 C -0.11 -2.02 10.01 71.24 0.71 -1.31 16
6 C -0.13 -3.61 9.24 22.27 0.21 -3.41 16
7 C -0.04 -1.07 4.45 -19.87 -0.09 -1.16 16
8 C -0.13 -3.61 1.21 -53.68 -0.07 -3.68 16
9 C 0.57 18.73 6.98 87.66 0.61 19.35 16
10 O -0.58 -22.13 17.05 -3.03 -0.05 -22.18 16
11 N -0.60 -19.66 3.33 -811.80 -2.70 -22.36 16
12 C 0.12 3.54 6.47 86.73 0.56 4.10 16
13 C -0.11 -3.32 3.19 -9.61 -0.03 -3.36 16
14 H 0.07 2.48 8.01 -2.39 -0.02 2.46 16
15 C -0.13 -3.53 9.17 71.98 0.66 -2.87 16
16 C 0.17 6.36 3.16 46.38 0.15 6.50 16
17 H 0.07 2.54 7.99 -2.38 -0.02 2.52 16
18 N -0.72 -33.34 5.23 -316.35 -1.65 -35.00 16
19 C -0.24 -12.13 9.96 84.03 0.84 -11.29 16
20 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16
21 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16
22 N -0.97 -56.32 13.07 21.65 0.28 -56.04 16
23 Si 0.96 43.65 29.55 68.60 2.03 45.67 16
24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16
25 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16
26 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16
27 C 0.10 3.43 5.53 86.85 0.48 3.92 16
28 C -0.12 -2.74 9.76 30.62 0.30 -2.44 16
29 C -0.14 -3.08 9.11 30.62 0.28 -2.80 16
30 C -0.12 -3.20 8.05 22.27 0.18 -3.02 16
31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16
32 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16
33 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16
34 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16
35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
36 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16
37 H 0.07 1.19 8.05 -2.39 -0.02 1.17 16
38 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16
39 H 0.08 2.16 7.78 -2.39 -0.02 2.14 16
40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
43 H 0.06 1.61 8.07 -2.38 -0.02 1.59 16
44 H 0.37 19.07 7.79 -92.71 -0.72 18.35 16
45 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16
46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
47 H 0.07 2.50 6.65 -2.39 -0.02 2.48 16
48 H 0.10 2.33 8.01 -2.38 -0.02 2.31 16
49 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16
50 H 0.12 2.27 6.99 -2.39 -0.02 2.25 16
51 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16
52 H 0.13 3.19 6.73 -2.91 -0.02 3.17 16
Total: -1.00 -63.96 420.25 4.03 -59.94
By element:
Atomic # 1 Polarization: 43.31 SS G_CDS: 0.18 Total: 43.49 kcal
Atomic # 6 Polarization: -19.47 SS G_CDS: 5.94 Total: -13.53 kcal
Atomic # 7 Polarization: -109.32 SS G_CDS: -4.07 Total: -113.39 kcal
Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal
Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal
Total: -63.96 4.03 -59.94 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000939767114.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.853 kcal
(2) G-P(sol) polarization free energy of solvation -63.962 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.109 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.937 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.917 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds