Wall clock time and date at job start Sat Apr 11 2020 06:46:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38256 * 119.99921 * 2 1
4 4 C 1.38214 * 119.99658 * 180.02562 * 3 2 1
5 5 C 1.38245 * 120.00455 * 0.02562 * 4 3 2
6 6 C 1.38215 * 120.00097 * 359.97438 * 5 4 3
7 7 C 1.50694 * 120.00388 * 179.97438 * 6 5 4
8 8 C 1.50705 * 115.55180 * 150.20386 * 7 6 5
9 9 O 1.21282 * 119.99823 * 99.30509 * 8 7 6
10 10 N 1.34769 * 119.99918 * 279.30113 * 8 7 6
11 11 C 1.46498 * 120.00157 * 174.85876 * 10 8 7
12 12 H 1.09000 * 110.01736 * 326.39807 * 11 10 8
13 13 C 1.54270 * 110.07103 * 87.81449 * 11 10 8
14 14 C 1.54881 * 104.19701 * 142.91897 * 13 11 10
15 15 C 1.54885 * 102.74919 * 322.05656 * 14 13 11
16 16 H 1.09001 * 110.60052 * 279.21086 * 15 14 13
17 17 C 1.53001 * 110.48946 * 156.62130 * 15 14 13
18 18 N 1.46496 * 109.47114 * 70.22489 * 17 15 14
19 19 C 1.36944 * 120.00191 * 180.02562 * 18 17 15
20 20 H 1.07994 * 119.99849 * 359.97438 * 19 18 17
21 21 C 1.38806 * 120.00068 * 179.72731 * 19 18 17
22 22 N 1.31627 * 119.99967 * 0.26621 * 21 19 18
23 23 Si 1.86800 * 120.00195 * 180.27239 * 21 19 18
24 24 H 1.48506 * 109.47155 * 59.99368 * 23 21 19
25 25 H 1.48496 * 109.47501 * 179.97438 * 23 21 19
26 26 H 1.48504 * 109.46786 * 299.99974 * 23 21 19
27 27 C 1.53878 * 110.03699 * 205.00473 * 11 10 8
28 28 C 1.53005 * 117.51893 * 295.90376 * 7 6 5
29 29 C 1.52999 * 117.49774 * 4.53134 * 7 6 5
30 30 C 1.38210 * 119.99947 * 180.27395 * 2 1 3
31 31 H 1.08994 * 109.46965 * 90.00427 * 1 2 3
32 32 H 1.09003 * 109.47113 * 210.00474 * 1 2 3
33 33 H 1.08996 * 109.47008 * 330.00135 * 1 2 3
34 34 H 1.07999 * 120.00110 * 0.02562 * 3 2 1
35 35 H 1.08004 * 119.99346 * 179.97438 * 4 3 2
36 36 H 1.08005 * 120.00373 * 179.97438 * 5 4 3
37 37 H 0.97003 * 120.00356 * 354.86641 * 10 8 7
38 38 H 1.09004 * 110.48241 * 261.59863 * 13 11 10
39 39 H 1.08996 * 110.48373 * 24.23619 * 13 11 10
40 40 H 1.09001 * 110.75828 * 203.74261 * 14 13 11
41 41 H 1.09008 * 110.75953 * 80.37187 * 14 13 11
42 42 H 1.09000 * 109.46938 * 310.22740 * 17 15 14
43 43 H 1.08995 * 109.47391 * 190.22905 * 17 15 14
44 44 H 0.97002 * 120.00191 * 359.97438 * 18 17 15
45 45 H 0.96999 * 119.99331 * 180.02562 * 22 21 19
46 46 H 1.08989 * 110.03119 * 121.38028 * 27 11 10
47 47 H 1.08999 * 110.02617 * 359.95386 * 27 11 10
48 48 H 1.08999 * 117.49948 * 214.97197 * 28 7 6
49 49 H 1.09003 * 117.49650 * 359.97438 * 28 7 6
50 50 H 1.08994 * 117.50041 * 359.97438 * 29 7 6
51 51 H 1.09004 * 117.49893 * 144.97497 * 29 7 6
52 52 H 1.07998 * 120.00231 * 0.02562 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1983 1.1973 0.0000
4 6 3.5805 1.1973 -0.0005
5 6 4.2717 0.0001 -0.0016
6 6 3.5807 -1.1969 -0.0016
7 6 4.3342 -2.5020 -0.0034
8 6 3.6381 -3.6553 0.6723
9 8 3.0425 -4.4772 0.0084
10 7 3.6775 -3.7735 2.0142
11 6 2.9089 -4.8282 2.6796
12 1 1.9827 -5.0145 2.1359
13 6 3.7446 -6.1226 2.7590
14 6 3.3757 -6.7291 4.1355
15 6 3.2520 -5.4770 5.0387
16 1 4.2361 -5.1416 5.3662
17 6 2.3596 -5.7733 6.2457
18 7 3.0545 -6.6894 7.1534
19 6 2.4465 -7.0995 8.3100
20 1 1.4550 -6.7471 8.5531
21 6 3.1026 -7.9720 9.1673
22 7 4.3112 -8.4011 8.8712
23 14 2.2703 -8.5373 10.7412
24 1 1.0077 -9.2441 10.4072
25 1 3.1738 -9.4592 11.4754
26 1 1.9674 -7.3584 11.5919
27 6 2.5956 -4.4178 4.1292
28 6 5.1996 -2.8170 -1.2252
29 6 5.8591 -2.4374 0.1021
30 6 2.1981 -1.1969 -0.0057
31 1 -0.3633 -0.0001 -1.0276
32 1 -0.3633 -0.8900 0.5139
33 1 -0.3633 0.8900 0.5138
34 1 1.6583 2.1326 0.0004
35 1 4.1204 2.1327 -0.0010
36 1 5.3518 0.0000 -0.0024
37 1 4.2148 -3.1600 2.5396
38 1 3.4683 -6.8048 1.9550
39 1 4.8091 -5.8924 2.7163
40 1 4.1684 -7.3864 4.4929
41 1 2.4261 -7.2616 4.0811
42 1 1.4309 -6.2324 5.9069
43 1 2.1356 -4.8437 6.7689
44 1 3.9449 -7.0062 6.9350
45 1 4.7694 -9.0111 9.4702
46 1 1.5176 -4.4048 4.2889
47 1 3.0163 -3.4341 4.3378
48 1 5.2654 -3.8584 -1.5403
49 1 5.2237 -2.0804 -2.0282
50 1 6.3174 -1.4510 0.1724
51 1 6.3590 -3.2289 0.6606
52 1 1.6581 -2.1322 -0.0106
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001507428639.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:43
Heat of formation + Delta-G solvation = -11.140181 kcal
Electronic energy + Delta-G solvation = -29297.751630 eV
Core-core repulsion = 25454.303738 eV
Total energy + Delta-G solvation = -3843.447892 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.70010 -40.28734 -39.24804 -37.53726 -36.46247 -34.74905 -33.41827 -32.91015
-31.78646 -30.18449 -29.18367 -27.80188 -26.45827 -25.39143 -23.92853 -23.69215
-23.36702 -22.10537 -21.42038 -21.01241 -20.39540 -19.07809 -18.42479 -17.64632
-17.37695 -16.74088 -16.40059 -16.18235 -15.89274 -15.83073 -15.40279 -15.21453
-15.07701 -14.81251 -14.66486 -14.55496 -14.43310 -14.05777 -13.67658 -13.59896
-13.22492 -13.14800 -13.06905 -12.93375 -12.76933 -12.61123 -12.45111 -12.26599
-12.21540 -12.09520 -12.00141 -11.81400 -11.65870 -11.60807 -11.56256 -11.53319
-11.48619 -10.90423 -10.80097 -10.10954 -9.69485 -9.44719 -8.98051 -7.94573
-5.22892 0.35597 0.45300 1.46899 1.49260 1.50074 1.56193 2.06165
2.54768 2.56514 2.99264 3.38460 3.44449 3.51024 3.55855 3.69134
3.82125 3.85896 3.93115 4.03301 4.07117 4.16553 4.22146 4.37289
4.43238 4.47386 4.47644 4.49453 4.59445 4.67017 4.67329 4.73389
4.75515 4.76708 4.82976 4.84472 4.92771 4.96517 5.03823 5.05723
5.11069 5.13430 5.13619 5.22307 5.27573 5.35728 5.46778 5.52683
5.56887 5.56942 5.60924 5.69202 6.09071 6.28076 6.50710 7.17861
7.34274 8.11559 8.34828 9.28841
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.016171 B = 0.002045 C = 0.001934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1731.059986 B =13686.050174 C =14470.980920
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.092 4.092
3 C -0.129 4.129
4 C -0.111 4.111
5 C -0.124 4.124
6 C -0.042 4.042
7 C -0.136 4.136
8 C 0.553 3.447
9 O -0.578 6.578
10 N -0.703 5.703
11 C 0.149 3.851
12 H 0.075 0.925
13 C -0.121 4.121
14 C -0.109 4.109
15 C -0.087 4.087
16 H 0.074 0.926
17 C 0.158 3.842
18 N -0.744 5.744
19 C -0.246 4.246
20 H 0.074 0.926
21 C -0.077 4.077
22 N -0.969 5.969
23 Si 0.974 3.026
24 H -0.279 1.279
25 H -0.295 1.295
26 H -0.277 1.277
27 C -0.109 4.109
28 C -0.139 4.139
29 C -0.137 4.137
30 C -0.133 4.133
31 H 0.076 0.924
32 H 0.058 0.942
33 H 0.082 0.918
34 H 0.141 0.859
35 H 0.150 0.850
36 H 0.149 0.851
37 H 0.413 0.587
38 H 0.060 0.940
39 H 0.074 0.926
40 H 0.054 0.946
41 H 0.059 0.941
42 H 0.017 0.983
43 H 0.021 0.979
44 H 0.374 0.626
45 H 0.251 0.749
46 H 0.080 0.920
47 H 0.090 0.910
48 H 0.092 0.908
49 H 0.118 0.882
50 H 0.134 0.866
51 H 0.108 0.892
52 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.034 22.919 -23.112 32.566
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.092 4.092
3 C -0.147 4.147
4 C -0.129 4.129
5 C -0.141 4.141
6 C -0.042 4.042
7 C -0.139 4.139
8 C 0.340 3.660
9 O -0.457 6.457
10 N -0.354 5.354
11 C 0.044 3.956
12 H 0.093 0.907
13 C -0.160 4.160
14 C -0.147 4.147
15 C -0.106 4.106
16 H 0.092 0.908
17 C 0.032 3.968
18 N -0.387 5.387
19 C -0.378 4.378
20 H 0.092 0.908
21 C -0.269 4.269
22 N -0.620 5.620
23 Si 0.802 3.198
24 H -0.205 1.205
25 H -0.221 1.221
26 H -0.203 1.203
27 C -0.147 4.147
28 C -0.177 4.177
29 C -0.174 4.174
30 C -0.151 4.151
31 H 0.095 0.905
32 H 0.077 0.923
33 H 0.101 0.899
34 H 0.159 0.841
35 H 0.168 0.832
36 H 0.166 0.834
37 H 0.250 0.750
38 H 0.079 0.921
39 H 0.093 0.907
40 H 0.073 0.927
41 H 0.077 0.923
42 H 0.035 0.965
43 H 0.039 0.961
44 H 0.206 0.794
45 H 0.060 0.940
46 H 0.098 0.902
47 H 0.108 0.892
48 H 0.110 0.890
49 H 0.137 0.863
50 H 0.152 0.848
51 H 0.126 0.874
52 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 0.428 22.344 -23.443 32.388
hybrid contribution -0.070 -0.954 1.151 1.496
sum 0.358 21.390 -22.292 30.897
Atomic orbital electron populations
1.20839 0.90302 1.03250 1.02887 1.20133 0.97056 0.92967 0.99066
1.21360 0.94959 0.97718 1.00648 1.21459 0.94225 0.98767 0.98465
1.21238 1.01181 0.90955 1.00762 1.18713 0.92601 0.92007 1.00882
1.20054 0.94459 0.92834 1.06561 1.19775 0.79190 0.84729 0.82315
1.90686 1.45388 1.44337 1.65311 1.46091 1.49098 1.33859 1.06349
1.21508 0.94337 0.86774 0.92934 0.90663 1.22667 1.00298 0.96349
0.96702 1.22380 1.01095 0.97017 0.94168 1.22011 0.99069 0.95500
0.93998 0.90788 1.20863 0.94170 0.91996 0.89788 1.42554 1.18750
1.55088 1.22270 1.19607 0.99426 1.21010 0.97773 0.90829 1.25571
0.97523 1.01149 1.02644 1.69813 1.14378 1.38332 1.39498 0.85211
0.77272 0.77766 0.79513 1.20532 1.22097 1.20283 1.22314 1.01924
0.99039 0.91466 1.23125 0.99395 1.03353 0.91782 1.23390 0.89264
1.05495 0.99239 1.20876 0.94107 0.97598 1.02563 0.90527 0.92286
0.89949 0.84080 0.83190 0.83376 0.74999 0.92131 0.90732 0.92724
0.92257 0.96457 0.96136 0.79374 0.94011 0.90178 0.89195 0.88950
0.86349 0.84776 0.87408 0.88548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.60 10.01 71.24 0.71 -0.89 16
2 C -0.09 -1.58 5.88 -19.87 -0.12 -1.69 16
3 C -0.13 -1.72 9.70 22.27 0.22 -1.51 16
4 C -0.11 -1.28 10.05 22.27 0.22 -1.06 16
5 C -0.12 -1.57 9.35 22.27 0.21 -1.36 16
6 C -0.04 -0.73 5.48 -19.87 -0.11 -0.84 16
7 C -0.14 -2.41 2.33 -53.67 -0.13 -2.54 16
8 C 0.55 13.28 5.81 87.66 0.51 13.79 16
9 O -0.58 -18.79 16.72 -3.04 -0.05 -18.84 16
10 N -0.70 -14.56 5.03 -439.10 -2.21 -16.77 16
11 C 0.15 3.61 3.21 45.72 0.15 3.75 16
12 H 0.08 2.07 7.64 -2.39 -0.02 2.05 16
13 C -0.12 -3.21 6.53 31.67 0.21 -3.01 16
14 C -0.11 -3.40 6.19 31.88 0.20 -3.21 16
15 C -0.09 -2.68 2.89 -9.72 -0.03 -2.71 16
16 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16
17 C 0.16 6.29 5.54 86.38 0.48 6.77 16
18 N -0.74 -38.19 5.49 -343.47 -1.89 -40.08 16
19 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16
20 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16
21 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16
22 N -0.97 -59.86 13.06 21.65 0.28 -59.58 16
23 Si 0.97 46.56 29.55 68.60 2.03 48.59 16
24 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16
25 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16
26 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16
27 C -0.11 -2.57 6.14 31.32 0.19 -2.38 16
28 C -0.14 -2.10 9.84 30.60 0.30 -1.80 16
29 C -0.14 -1.54 9.57 30.59 0.29 -1.25 16
30 C -0.13 -2.75 8.98 22.27 0.20 -2.55 16
31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
32 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16
33 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16
34 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16
35 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16
36 H 0.15 1.09 5.95 -2.91 -0.02 1.07 16
37 H 0.41 6.59 8.32 -92.71 -0.77 5.82 16
38 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16
39 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16
40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
41 H 0.06 1.97 7.97 -2.38 -0.02 1.95 16
42 H 0.02 0.71 8.02 -2.39 -0.02 0.69 16
43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
44 H 0.37 20.35 7.64 -92.71 -0.71 19.64 16
45 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16
46 H 0.08 1.88 7.84 -2.39 -0.02 1.86 16
47 H 0.09 1.77 7.62 -2.39 -0.02 1.75 16
48 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
49 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16
50 H 0.13 0.82 6.10 -2.39 -0.01 0.80 16
51 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16
52 H 0.10 2.40 7.34 -2.91 -0.02 2.38 16
Total: -1.00 -72.59 420.22 2.42 -70.18
By element:
Atomic # 1 Polarization: 36.64 SS G_CDS: -0.56 Total: 36.08 kcal
Atomic # 6 Polarization: -24.40 SS G_CDS: 4.81 Total: -19.59 kcal
Atomic # 7 Polarization: -112.61 SS G_CDS: -3.81 Total: -116.42 kcal
Atomic # 8 Polarization: -18.79 SS G_CDS: -0.05 Total: -18.84 kcal
Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal
Total: -72.59 2.42 -70.18 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001507428639.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.038 kcal
(2) G-P(sol) polarization free energy of solvation -72.594 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.556 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.140 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds