Wall clock time and date at job start Sat Apr 11 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 115.55238 * 2 1 4 4 C 1.53073 * 117.51600 * 214.27389 * 2 1 3 5 5 C 1.53002 * 59.98762 * 252.52307 * 4 2 1 6 6 C 1.50699 * 117.49808 * 107.49794 * 5 4 2 7 7 O 1.21289 * 119.99967 * 259.22837 * 6 5 4 8 8 N 1.34772 * 120.00122 * 79.23086 * 6 5 4 9 9 C 1.47424 * 125.64821 * 4.58714 * 8 6 5 10 10 C 1.54910 * 104.83270 * 204.15359 * 9 8 6 11 11 C 1.55157 * 101.58000 * 322.98481 * 10 9 8 12 12 C 1.47019 * 125.65123 * 184.61364 * 8 6 5 13 13 H 1.09000 * 110.01527 * 59.42595 * 12 8 6 14 14 C 1.53004 * 109.87874 * 298.33570 * 12 8 6 15 15 N 1.46499 * 109.47176 * 75.82755 * 14 12 8 16 16 C 1.36936 * 119.99797 * 188.18965 * 15 14 12 17 17 H 1.07996 * 120.00652 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99957 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00029 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47075 * 90.00213 * 20 18 16 22 22 H 1.48497 * 109.47258 * 210.00408 * 20 18 16 23 23 H 1.48501 * 109.47195 * 330.00207 * 20 18 16 24 24 C 1.50700 * 117.49802 * 252.49942 * 5 4 2 25 25 C 1.38235 * 119.99872 * 148.73269 * 24 5 4 26 26 C 1.38240 * 119.99997 * 179.78516 * 25 24 5 27 27 C 1.38234 * 119.99606 * 0.46522 * 26 25 24 28 28 C 1.38235 * 119.99915 * 359.76476 * 27 26 25 29 29 C 1.38226 * 120.00492 * 0.02562 * 28 27 26 30 30 H 1.09006 * 109.47064 * 274.33289 * 1 2 3 31 31 H 1.09000 * 109.47159 * 34.33074 * 1 2 3 32 32 H 1.09004 * 109.47122 * 154.33444 * 1 2 3 33 33 H 1.08998 * 109.47690 * 208.89979 * 3 2 1 34 34 H 1.09008 * 109.46938 * 328.90002 * 3 2 1 35 35 H 1.09003 * 109.47520 * 88.89381 * 3 2 1 36 36 H 1.09003 * 117.49491 * 145.03723 * 4 2 1 37 37 H 1.09000 * 117.50882 * 0.02562 * 4 2 1 38 38 H 1.08997 * 110.36618 * 85.31072 * 9 8 6 39 39 H 1.09007 * 110.36623 * 322.98776 * 9 8 6 40 40 H 1.09000 * 111.00258 * 204.91759 * 10 9 8 41 41 H 1.08994 * 111.00770 * 81.06644 * 10 9 8 42 42 H 1.09000 * 110.72578 * 277.14304 * 11 10 9 43 43 H 1.08996 * 110.71768 * 153.86480 * 11 10 9 44 44 H 1.09004 * 109.46949 * 195.82126 * 14 12 8 45 45 H 1.08999 * 109.47275 * 315.82035 * 14 12 8 46 46 H 0.96997 * 120.00417 * 8.18793 * 15 14 12 47 47 H 0.96998 * 119.99819 * 179.97438 * 19 18 16 48 48 H 1.08001 * 120.00085 * 359.97438 * 25 24 5 49 49 H 1.07996 * 119.99830 * 180.24995 * 26 25 24 50 50 H 1.07997 * 119.99898 * 179.79145 * 27 26 25 51 51 H 1.08004 * 119.99577 * 180.02562 * 28 27 26 52 52 H 1.08004 * 120.00463 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2371 -1.1218 -0.7645 5 6 2.2365 -1.1207 0.7655 6 6 1.3720 -2.1401 1.4617 7 8 0.2954 -1.8139 1.9151 8 7 1.7952 -3.4141 1.5805 9 6 3.1142 -3.9237 1.1635 10 6 2.8957 -5.4380 0.9209 11 6 1.8936 -5.7931 2.0509 12 6 1.0178 -4.5260 2.1469 13 1 0.0988 -4.6666 1.5779 14 6 0.6834 -4.2342 3.6111 15 7 -0.3951 -3.2451 3.6780 16 6 -0.7515 -2.7012 4.8831 17 1 -0.2378 -3.0017 5.7843 18 6 -1.7732 -1.7636 4.9465 19 7 -2.3997 -1.3977 3.8483 20 14 -2.2598 -1.0221 6.5905 21 1 -1.4571 0.2023 6.8383 22 1 -3.7027 -0.6719 6.5679 23 1 -2.0066 -2.0074 7.6723 24 6 3.5290 -0.7804 1.4616 25 6 3.5065 -0.1428 2.6880 26 6 4.6920 0.1654 3.3286 27 6 5.9002 -0.1554 2.7384 28 6 5.9227 -0.7887 1.5099 29 6 4.7372 -1.1008 0.8713 30 1 -0.3633 0.0776 1.0248 31 1 -0.3633 0.8486 -0.5796 32 1 -0.3633 -0.9263 -0.4451 33 1 3.1583 1.3202 -0.4966 34 1 1.5526 2.0877 -0.5309 35 1 2.3287 1.7168 1.0275 36 1 3.1724 -0.8761 -1.2676 37 1 1.6123 -1.8597 -1.2678 38 1 3.8482 -3.7682 1.9542 39 1 3.4365 -3.4348 0.2440 40 1 3.8278 -5.9909 1.0374 41 1 2.4573 -5.6171 -0.0608 42 1 2.4181 -5.9714 2.9896 43 1 1.2911 -6.6582 1.7742 44 1 0.3637 -5.1540 4.1010 45 1 1.5673 -3.8427 4.1146 46 1 -0.8568 -2.9755 2.8687 47 1 -3.1138 -0.7428 3.8926 48 1 2.5626 0.1118 3.1470 49 1 4.6743 0.6599 4.2886 50 1 6.8264 0.0884 3.2374 51 1 6.8666 -1.0397 1.0490 52 1 4.7548 -1.5952 -0.0887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671359852.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:47:12 Heat of formation + Delta-G solvation = 48.584405 kcal Electronic energy + Delta-G solvation = -32367.744367 eV Core-core repulsion = 28526.886328 eV Total energy + Delta-G solvation = -3840.858040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.65586 -38.96231 -37.80553 -36.15626 -34.11889 -31.79984 -31.13705 -30.84199 -30.77967 -28.74597 -28.54071 -27.07231 -25.01798 -24.39863 -22.87676 -22.38328 -21.93221 -21.15022 -20.49365 -19.19191 -18.00307 -17.32928 -16.64405 -16.17691 -15.81248 -15.05720 -14.80583 -14.65143 -14.37379 -14.32433 -13.65150 -13.52855 -13.43894 -13.38669 -13.28355 -12.94109 -12.87216 -12.62009 -12.49579 -12.44427 -12.13310 -11.87640 -11.69446 -11.50252 -11.35590 -11.14294 -11.11309 -11.05840 -10.99658 -10.88232 -10.67188 -10.54135 -10.41192 -9.97993 -9.85435 -9.62759 -9.44301 -8.92485 -8.83066 -8.61491 -8.31616 -7.97862 -6.51298 -5.42833 -2.68549 1.39107 1.48369 3.21886 3.43536 3.56952 3.61669 3.63114 3.71797 3.97922 4.59259 4.65549 4.70795 4.81954 4.84093 4.92669 4.99882 5.04028 5.06863 5.15031 5.29828 5.34503 5.47892 5.50070 5.54958 5.67122 5.69031 5.73968 5.75208 5.81094 5.85225 5.86319 5.90358 5.95951 6.07532 6.10123 6.12523 6.14220 6.18464 6.23597 6.30749 6.32181 6.47622 6.51552 6.57804 6.61907 6.69058 6.73848 6.91074 7.00874 7.06810 7.12073 7.92369 8.14848 8.71420 9.01509 9.87660 10.53609 10.93384 11.78190 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.004960 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.576179 B = 5644.308899 C = 6430.303747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.112 4.112 4 C -0.158 4.158 5 C -0.106 4.106 6 C 0.547 3.453 7 O -0.443 6.443 8 N -0.612 5.612 9 C 0.107 3.893 10 C -0.134 4.134 11 C -0.124 4.124 12 C 0.131 3.869 13 H 0.071 0.929 14 C 0.147 3.853 15 N -0.715 5.715 16 C -0.231 4.231 17 H 0.058 0.942 18 C -0.009 4.009 19 N -0.915 5.915 20 Si 0.893 3.107 21 H -0.294 1.294 22 H -0.294 1.294 23 H -0.286 1.286 24 C -0.030 4.030 25 C -0.097 4.097 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.124 4.124 29 C -0.115 4.115 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.014 0.986 45 H 0.018 0.982 46 H 0.398 0.602 47 H 0.247 0.753 48 H 0.127 0.873 49 H 0.121 0.879 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.034 -1.745 -11.957 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.169 4.169 4 C -0.195 4.195 5 C -0.109 4.109 6 C 0.331 3.669 7 O -0.311 6.311 8 N -0.349 5.349 9 C -0.017 4.017 10 C -0.172 4.172 11 C -0.163 4.163 12 C 0.028 3.972 13 H 0.089 0.911 14 C 0.017 3.983 15 N -0.365 5.365 16 C -0.363 4.363 17 H 0.077 0.923 18 C -0.205 4.205 19 N -0.564 5.564 20 Si 0.725 3.275 21 H -0.222 1.222 22 H -0.221 1.221 23 H -0.212 1.212 24 C -0.030 4.030 25 C -0.115 4.115 26 C -0.135 4.135 27 C -0.143 4.143 28 C -0.142 4.142 29 C -0.133 4.133 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.031 0.969 45 H 0.035 0.965 46 H 0.239 0.761 47 H 0.057 0.943 48 H 0.145 0.855 49 H 0.139 0.861 50 H 0.135 0.865 51 H 0.136 0.864 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.322 -1.400 -11.558 20.871 hybrid contribution -0.152 0.438 0.871 0.987 sum 17.170 -0.962 -10.686 20.247 Atomic orbital electron populations 1.21468 0.90270 1.00761 1.04732 1.21632 0.95881 0.90424 0.99666 1.21350 0.99420 0.93884 1.02252 1.23402 1.02645 1.02072 0.91375 1.20222 0.95943 1.01293 0.93490 1.18952 0.86841 0.80549 0.80513 1.90944 1.20623 1.76864 1.42649 1.48346 1.15609 1.07895 1.63074 1.22194 0.86344 0.93739 0.99393 1.22767 0.99740 0.95441 0.99215 1.22623 0.97528 0.97022 0.99083 1.21847 0.94145 0.84961 0.96241 0.91113 1.20958 0.92549 0.93241 0.91505 1.42711 1.38470 1.46940 1.08388 1.19106 1.13090 1.17539 0.86576 0.92349 1.24613 0.99673 1.00234 0.96020 1.69729 1.26034 1.35478 1.25149 0.86401 0.77407 0.79263 0.84406 1.22236 1.22065 1.21187 1.18742 0.91759 0.97893 0.94592 1.21159 0.98841 0.97058 0.94435 1.21149 0.92332 1.00180 0.99818 1.21100 0.97725 0.99639 0.95876 1.21018 0.97653 0.99808 0.95708 1.20950 0.91718 1.00639 1.00004 0.88842 0.93168 0.92841 0.92697 0.91962 0.91891 0.88320 0.88451 0.92219 0.91262 0.90416 0.90927 0.90544 0.90356 0.96870 0.96458 0.76139 0.94262 0.85545 0.86142 0.86469 0.86373 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 8.25 37.15 0.31 -1.65 16 2 C -0.08 -1.10 2.70 -154.47 -0.42 -1.52 16 3 C -0.11 -1.42 8.92 37.16 0.33 -1.09 16 4 C -0.16 -1.95 8.36 -26.69 -0.22 -2.18 16 5 C -0.11 -1.61 1.19 -156.81 -0.19 -1.80 16 6 C 0.55 10.42 6.61 -10.99 -0.07 10.35 16 7 O -0.44 -10.70 10.45 5.55 0.06 -10.64 16 8 N -0.61 -10.25 3.06 -163.01 -0.50 -10.75 16 9 C 0.11 1.34 5.75 -2.53 -0.01 1.33 16 10 C -0.13 -1.38 7.09 -24.58 -0.17 -1.55 16 11 C -0.12 -1.56 6.44 -24.90 -0.16 -1.72 16 12 C 0.13 2.30 3.08 -66.95 -0.21 2.10 16 13 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 14 C 0.15 3.23 5.61 -4.04 -0.02 3.21 16 15 N -0.72 -19.65 4.05 -59.91 -0.24 -19.90 16 16 C -0.23 -6.97 9.99 -15.06 -0.15 -7.12 16 17 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.92 -29.29 13.06 55.49 0.72 -28.56 16 20 Si 0.89 23.83 29.55 -169.99 -5.02 18.81 16 21 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 22 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 24 C -0.03 -0.42 3.51 -104.62 -0.37 -0.78 16 25 C -0.10 -1.50 9.07 -39.58 -0.36 -1.86 16 26 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 27 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 28 C -0.12 -1.30 10.05 -39.59 -0.40 -1.69 16 29 C -0.12 -1.31 8.27 -39.59 -0.33 -1.64 16 30 H 0.09 1.99 6.79 -51.93 -0.35 1.64 16 31 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16 32 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 33 H 0.05 0.61 7.88 -51.93 -0.41 0.20 16 34 H 0.06 0.72 7.88 -51.92 -0.41 0.31 16 35 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 36 H 0.10 1.00 7.02 -51.93 -0.36 0.64 16 37 H 0.10 1.21 8.05 -51.93 -0.42 0.79 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.77 6.46 -51.92 -0.34 0.43 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.01 0.30 8.09 -51.93 -0.42 -0.12 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.40 11.65 5.21 -40.82 -0.21 11.44 16 47 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 49 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 50 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 51 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 52 H 0.12 1.14 6.70 -52.48 -0.35 0.78 16 LS Contribution 404.37 15.07 6.09 6.09 Total: -1.00 -34.86 404.37 -10.88 -45.74 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.66 Total: 10.93 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -3.33 Total: -11.72 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.02 Total: -59.21 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.06 Total: -10.64 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.02 Total: 18.81 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.86 -10.88 -45.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671359852.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.327 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds