Wall clock time and date at job start Sat Apr 11 2020 06:47:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52998 * 115.55238 * 2 1
4 4 C 1.53073 * 117.51600 * 214.27389 * 2 1 3
5 5 C 1.53002 * 59.98762 * 252.52307 * 4 2 1
6 6 C 1.50699 * 117.49808 * 107.49794 * 5 4 2
7 7 O 1.21289 * 119.99967 * 259.22837 * 6 5 4
8 8 N 1.34772 * 120.00122 * 79.23086 * 6 5 4
9 9 C 1.47424 * 125.64821 * 4.58714 * 8 6 5
10 10 C 1.54910 * 104.83270 * 204.15359 * 9 8 6
11 11 C 1.55157 * 101.58000 * 322.98481 * 10 9 8
12 12 C 1.47019 * 125.65123 * 184.61364 * 8 6 5
13 13 H 1.09000 * 110.01527 * 59.42595 * 12 8 6
14 14 C 1.53004 * 109.87874 * 298.33570 * 12 8 6
15 15 N 1.46499 * 109.47176 * 75.82755 * 14 12 8
16 16 C 1.36936 * 119.99797 * 188.18965 * 15 14 12
17 17 H 1.07996 * 120.00652 * 359.97438 * 16 15 14
18 18 C 1.38818 * 119.99886 * 179.97438 * 16 15 14
19 19 N 1.31620 * 119.99957 * 0.02562 * 18 16 15
20 20 Si 1.86796 * 120.00029 * 179.97438 * 18 16 15
21 21 H 1.48497 * 109.47075 * 90.00213 * 20 18 16
22 22 H 1.48497 * 109.47258 * 210.00408 * 20 18 16
23 23 H 1.48501 * 109.47195 * 330.00207 * 20 18 16
24 24 C 1.50700 * 117.49802 * 252.49942 * 5 4 2
25 25 C 1.38235 * 119.99872 * 148.73269 * 24 5 4
26 26 C 1.38240 * 119.99997 * 179.78516 * 25 24 5
27 27 C 1.38234 * 119.99606 * 0.46522 * 26 25 24
28 28 C 1.38235 * 119.99915 * 359.76476 * 27 26 25
29 29 C 1.38226 * 120.00492 * 0.02562 * 28 27 26
30 30 H 1.09006 * 109.47064 * 274.33289 * 1 2 3
31 31 H 1.09000 * 109.47159 * 34.33074 * 1 2 3
32 32 H 1.09004 * 109.47122 * 154.33444 * 1 2 3
33 33 H 1.08998 * 109.47690 * 208.89979 * 3 2 1
34 34 H 1.09008 * 109.46938 * 328.90002 * 3 2 1
35 35 H 1.09003 * 109.47520 * 88.89381 * 3 2 1
36 36 H 1.09003 * 117.49491 * 145.03723 * 4 2 1
37 37 H 1.09000 * 117.50882 * 0.02562 * 4 2 1
38 38 H 1.08997 * 110.36618 * 85.31072 * 9 8 6
39 39 H 1.09007 * 110.36623 * 322.98776 * 9 8 6
40 40 H 1.09000 * 111.00258 * 204.91759 * 10 9 8
41 41 H 1.08994 * 111.00770 * 81.06644 * 10 9 8
42 42 H 1.09000 * 110.72578 * 277.14304 * 11 10 9
43 43 H 1.08996 * 110.71768 * 153.86480 * 11 10 9
44 44 H 1.09004 * 109.46949 * 195.82126 * 14 12 8
45 45 H 1.08999 * 109.47275 * 315.82035 * 14 12 8
46 46 H 0.96997 * 120.00417 * 8.18793 * 15 14 12
47 47 H 0.96998 * 119.99819 * 179.97438 * 19 18 16
48 48 H 1.08001 * 120.00085 * 359.97438 * 25 24 5
49 49 H 1.07996 * 119.99830 * 180.24995 * 26 25 24
50 50 H 1.07997 * 119.99898 * 179.79145 * 27 26 25
51 51 H 1.08004 * 119.99577 * 180.02562 * 28 27 26
52 52 H 1.08004 * 120.00463 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.1899 1.3803 0.0000
4 6 2.2371 -1.1218 -0.7645
5 6 2.2365 -1.1207 0.7655
6 6 1.3720 -2.1401 1.4617
7 8 0.2954 -1.8139 1.9151
8 7 1.7952 -3.4141 1.5805
9 6 3.1142 -3.9237 1.1635
10 6 2.8957 -5.4380 0.9209
11 6 1.8936 -5.7931 2.0509
12 6 1.0178 -4.5260 2.1469
13 1 0.0988 -4.6666 1.5779
14 6 0.6834 -4.2342 3.6111
15 7 -0.3951 -3.2451 3.6780
16 6 -0.7515 -2.7012 4.8831
17 1 -0.2378 -3.0017 5.7843
18 6 -1.7732 -1.7636 4.9465
19 7 -2.3997 -1.3977 3.8483
20 14 -2.2598 -1.0221 6.5905
21 1 -1.4571 0.2023 6.8383
22 1 -3.7027 -0.6719 6.5679
23 1 -2.0066 -2.0074 7.6723
24 6 3.5290 -0.7804 1.4616
25 6 3.5065 -0.1428 2.6880
26 6 4.6920 0.1654 3.3286
27 6 5.9002 -0.1554 2.7384
28 6 5.9227 -0.7887 1.5099
29 6 4.7372 -1.1008 0.8713
30 1 -0.3633 0.0776 1.0248
31 1 -0.3633 0.8486 -0.5796
32 1 -0.3633 -0.9263 -0.4451
33 1 3.1583 1.3202 -0.4966
34 1 1.5526 2.0877 -0.5309
35 1 2.3287 1.7168 1.0275
36 1 3.1724 -0.8761 -1.2676
37 1 1.6123 -1.8597 -1.2678
38 1 3.8482 -3.7682 1.9542
39 1 3.4365 -3.4348 0.2440
40 1 3.8278 -5.9909 1.0374
41 1 2.4573 -5.6171 -0.0608
42 1 2.4181 -5.9714 2.9896
43 1 1.2911 -6.6582 1.7742
44 1 0.3637 -5.1540 4.1010
45 1 1.5673 -3.8427 4.1146
46 1 -0.8568 -2.9755 2.8687
47 1 -3.1138 -0.7428 3.8926
48 1 2.5626 0.1118 3.1470
49 1 4.6743 0.6599 4.2886
50 1 6.8264 0.0884 3.2374
51 1 6.8666 -1.0397 1.0490
52 1 4.7548 -1.5952 -0.0887
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001671359852.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:11
Heat of formation + Delta-G solvation = 28.118456 kcal
Electronic energy + Delta-G solvation = -32368.631838 eV
Core-core repulsion = 28526.886328 eV
Total energy + Delta-G solvation = -3841.745510 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.85937 -40.13017 -38.92003 -37.52250 -36.17133 -33.37907 -32.77727 -31.87975
-31.79436 -30.29433 -29.72965 -28.32504 -26.67934 -25.73570 -24.43596 -23.46116
-23.35252 -22.23428 -21.63151 -20.49191 -19.37435 -19.01468 -18.08494 -17.48028
-17.00150 -16.65083 -16.17288 -16.02612 -15.65546 -15.38132 -15.23292 -14.94543
-14.77443 -14.72762 -14.58416 -14.31291 -14.06815 -13.94314 -13.68571 -13.57414
-13.46873 -13.16757 -13.10856 -13.02776 -12.90469 -12.69066 -12.61412 -12.28962
-12.21578 -12.10574 -12.03396 -11.96305 -11.90810 -11.60900 -11.50177 -11.11975
-10.91361 -10.72425 -10.30864 -9.79027 -9.44908 -9.41867 -8.76412 -7.80726
-5.06738 0.43155 0.51967 1.36979 1.40515 1.48330 1.88599 2.15657
2.56570 2.62392 2.93880 3.46139 3.51689 3.56076 3.72650 3.75468
3.79238 3.96434 4.05478 4.14688 4.16634 4.22167 4.29168 4.32670
4.39046 4.43761 4.50786 4.67288 4.70377 4.72103 4.75233 4.78321
4.81756 4.84539 4.90229 4.93525 4.98506 5.00295 5.00953 5.08307
5.13850 5.16362 5.17892 5.19588 5.31408 5.41108 5.46328 5.51711
5.60206 5.65204 5.69126 5.75603 6.13770 6.35999 6.81960 7.41515
7.62115 8.33405 8.61349 9.40612
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.009081 B = 0.004960 C = 0.004353
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3082.576179 B = 5644.308899 C = 6430.303747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C -0.098 4.098
3 C -0.103 4.103
4 C -0.118 4.118
5 C -0.116 4.116
6 C 0.534 3.466
7 O -0.510 6.510
8 N -0.613 5.613
9 C 0.101 3.899
10 C -0.117 4.117
11 C -0.115 4.115
12 C 0.131 3.869
13 H 0.047 0.953
14 C 0.146 3.854
15 N -0.727 5.727
16 C -0.241 4.241
17 H 0.057 0.943
18 C -0.071 4.071
19 N -0.948 5.948
20 Si 0.961 3.039
21 H -0.295 1.295
22 H -0.292 1.292
23 H -0.270 1.270
24 C -0.035 4.035
25 C -0.130 4.130
26 C -0.130 4.130
27 C -0.121 4.121
28 C -0.110 4.110
29 C -0.107 4.107
30 H 0.035 0.965
31 H 0.068 0.932
32 H 0.039 0.961
33 H 0.080 0.920
34 H 0.071 0.929
35 H 0.039 0.961
36 H 0.139 0.861
37 H 0.098 0.902
38 H 0.057 0.943
39 H 0.093 0.907
40 H 0.113 0.887
41 H 0.085 0.915
42 H 0.080 0.920
43 H 0.097 0.903
44 H 0.019 0.981
45 H 0.001 0.999
46 H 0.387 0.613
47 H 0.242 0.758
48 H 0.072 0.928
49 H 0.120 0.880
50 H 0.146 0.854
51 H 0.159 0.841
52 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.731 -3.225 -14.215 27.003
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.098 4.098
3 C -0.160 4.160
4 C -0.154 4.154
5 C -0.119 4.119
6 C 0.321 3.679
7 O -0.383 6.383
8 N -0.349 5.349
9 C -0.021 4.021
10 C -0.155 4.155
11 C -0.154 4.154
12 C 0.027 3.973
13 H 0.066 0.934
14 C 0.018 3.982
15 N -0.375 5.375
16 C -0.374 4.374
17 H 0.075 0.925
18 C -0.264 4.264
19 N -0.598 5.598
20 Si 0.791 3.209
21 H -0.223 1.223
22 H -0.218 1.218
23 H -0.195 1.195
24 C -0.035 4.035
25 C -0.149 4.149
26 C -0.148 4.148
27 C -0.139 4.139
28 C -0.128 4.128
29 C -0.125 4.125
30 H 0.054 0.946
31 H 0.087 0.913
32 H 0.058 0.942
33 H 0.099 0.901
34 H 0.090 0.910
35 H 0.058 0.942
36 H 0.157 0.843
37 H 0.117 0.883
38 H 0.075 0.925
39 H 0.111 0.889
40 H 0.132 0.868
41 H 0.104 0.896
42 H 0.099 0.901
43 H 0.115 0.885
44 H 0.037 0.963
45 H 0.019 0.981
46 H 0.226 0.774
47 H 0.051 0.949
48 H 0.090 0.910
49 H 0.138 0.862
50 H 0.164 0.836
51 H 0.177 0.823
52 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 22.090 -2.936 -13.814 26.219
hybrid contribution -1.573 0.870 1.620 2.419
sum 20.517 -2.066 -12.195 23.957
Atomic orbital electron populations
1.21247 0.92924 1.00770 1.01136 1.21687 0.94176 0.92241 1.01727
1.21288 1.00666 0.92757 1.01269 1.23517 1.03385 0.99520 0.89017
1.20079 0.96107 1.00498 0.95220 1.19778 0.86521 0.81760 0.79821
1.90918 1.23652 1.78161 1.45570 1.48494 1.17183 1.07122 1.62066
1.22495 0.83797 0.95605 1.00191 1.22792 1.00497 0.93572 0.98603
1.22618 0.97497 0.94573 1.00694 1.21800 0.95071 0.87927 0.92469
0.93442 1.21126 0.90216 0.91698 0.95180 1.42907 1.39710 1.47775
1.07098 1.19464 1.12808 1.17564 0.87574 0.92478 1.25430 1.00149
1.01117 0.99662 1.69939 1.26507 1.36053 1.27348 0.85321 0.76740
0.78323 0.80501 1.22332 1.21841 1.19521 1.18653 0.92325 0.98505
0.94026 1.20920 0.97552 1.00170 0.96249 1.21241 0.92645 1.00763
1.00117 1.21442 0.97482 0.98623 0.96315 1.21490 0.98870 0.97615
0.94805 1.21238 0.90503 0.99796 1.00945 0.94575 0.91319 0.94167
0.90106 0.91041 0.94203 0.84316 0.88331 0.92456 0.88888 0.86838
0.89595 0.90139 0.88475 0.96304 0.98081 0.77413 0.94948 0.90969
0.86243 0.83581 0.82305 0.83116
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -3.84 8.25 71.98 0.59 -3.25 16
2 C -0.10 -2.92 2.70 -52.16 -0.14 -3.06 16
3 C -0.10 -2.58 8.92 71.98 0.64 -1.94 16
4 C -0.12 -2.61 8.36 30.62 0.26 -2.36 16
5 C -0.12 -3.55 1.19 -53.67 -0.06 -3.61 16
6 C 0.53 21.61 6.61 87.66 0.58 22.19 16
7 O -0.51 -27.24 10.45 -3.06 -0.03 -27.28 16
8 N -0.61 -20.80 3.06 -788.05 -2.41 -23.21 16
9 C 0.10 2.23 5.75 86.86 0.50 2.73 16
10 C -0.12 -1.90 7.09 31.99 0.23 -1.67 16
11 C -0.12 -2.64 6.44 31.78 0.20 -2.44 16
12 C 0.13 4.72 3.08 45.34 0.14 4.86 16
13 H 0.05 1.91 8.10 -2.39 -0.02 1.90 16
14 C 0.15 6.79 5.61 86.38 0.48 7.27 16
15 N -0.73 -42.85 4.05 -343.44 -1.39 -44.24 16
16 C -0.24 -15.44 9.99 84.04 0.84 -14.60 16
17 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16
18 C -0.07 -4.56 5.50 84.86 0.47 -4.09 16
19 N -0.95 -64.85 13.06 21.65 0.28 -64.57 16
20 Si 0.96 51.57 29.55 68.60 2.03 53.59 16
21 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16
22 H -0.29 -15.45 7.11 99.48 0.71 -14.75 16
23 H -0.27 -13.66 7.11 99.48 0.71 -12.95 16
24 C -0.03 -0.95 3.51 -19.87 -0.07 -1.02 16
25 C -0.13 -4.33 9.07 22.27 0.20 -4.13 16
26 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16
27 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16
28 C -0.11 -1.73 10.05 22.27 0.22 -1.51 16
29 C -0.11 -1.98 8.27 22.27 0.18 -1.80 16
30 H 0.04 1.74 6.79 -2.38 -0.02 1.73 16
31 H 0.07 2.16 7.89 -2.39 -0.02 2.14 16
32 H 0.04 1.52 7.88 -2.38 -0.02 1.50 16
33 H 0.08 1.58 7.88 -2.39 -0.02 1.56 16
34 H 0.07 1.62 7.88 -2.38 -0.02 1.60 16
35 H 0.04 1.17 7.52 -2.39 -0.02 1.15 16
36 H 0.14 2.00 7.02 -2.39 -0.02 1.99 16
37 H 0.10 2.21 8.05 -2.39 -0.02 2.19 16
38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
39 H 0.09 1.62 6.46 -2.38 -0.02 1.61 16
40 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16
41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
42 H 0.08 1.80 7.85 -2.39 -0.02 1.78 16
43 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16
44 H 0.02 0.87 8.09 -2.38 -0.02 0.85 16
45 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16
46 H 0.39 24.62 5.21 -92.71 -0.48 24.14 16
47 H 0.24 16.04 8.31 -92.71 -0.77 15.27 16
48 H 0.07 3.09 8.06 -2.91 -0.02 3.07 16
49 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16
50 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16
51 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16
52 H 0.15 1.84 6.70 -2.91 -0.02 1.82 16
Total: -1.00 -87.19 404.37 4.60 -82.58
By element:
Atomic # 1 Polarization: 36.41 SS G_CDS: 0.42 Total: 36.83 kcal
Atomic # 6 Polarization: -19.43 SS G_CDS: 5.72 Total: -13.71 kcal
Atomic # 7 Polarization: -128.50 SS G_CDS: -3.52 Total: -132.02 kcal
Atomic # 8 Polarization: -27.24 SS G_CDS: -0.03 Total: -27.28 kcal
Atomic # 14 Polarization: 51.57 SS G_CDS: 2.03 Total: 53.59 kcal
Total: -87.19 4.60 -82.58 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001671359852.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.700 kcal
(2) G-P(sol) polarization free energy of solvation -87.186 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.515 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.582 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.118 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds