Wall clock time and date at job start Sat Apr 11 2020 06:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38249 * 120.00235 * 2 1 4 4 C 1.38226 * 120.00028 * 179.83567 * 3 2 1 5 5 C 1.38253 * 119.99773 * 0.43411 * 4 3 2 6 6 C 1.50700 * 120.00106 * 179.78909 * 5 4 3 7 7 C 1.52995 * 109.47178 * 264.73140 * 6 5 4 8 8 C 1.50707 * 109.46932 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99898 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99786 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99830 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46976 * 179.97438 * 11 10 8 13 13 H 1.09006 * 115.49475 * 29.61734 * 12 11 10 14 14 C 1.52998 * 117.44082 * 244.24179 * 12 11 10 15 15 H 1.08997 * 119.54436 * 4.11485 * 14 12 11 16 16 C 1.54792 * 117.94010 * 160.75786 * 14 12 11 17 17 N 1.48144 * 104.42136 * 87.46074 * 16 14 12 18 18 C 1.36934 * 127.83990 * 140.36569 * 17 16 14 19 19 H 1.07999 * 119.99891 * 338.37584 * 18 17 16 20 20 C 1.38819 * 120.00050 * 158.37202 * 18 17 16 21 21 N 1.31617 * 119.99821 * 335.55641 * 20 18 17 22 22 Si 1.86792 * 119.99988 * 155.55891 * 20 18 17 23 23 H 1.48497 * 109.47419 * 59.99879 * 22 20 18 24 24 H 1.48504 * 109.47529 * 299.99920 * 22 20 18 25 25 H 1.48504 * 109.47241 * 180.02562 * 22 20 18 26 26 C 1.48148 * 104.32455 * 320.10976 * 17 16 14 27 27 C 1.52995 * 117.44174 * 175.00252 * 12 11 10 28 28 H 1.09004 * 120.26288 * 356.16966 * 27 12 11 29 29 C 1.38223 * 120.00114 * 359.52243 * 5 4 3 30 30 C 1.50696 * 119.99883 * 180.25242 * 29 5 4 31 31 C 1.38221 * 119.99723 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47081 * 269.98033 * 1 2 3 33 33 H 1.09004 * 109.46606 * 29.98492 * 1 2 3 34 34 H 1.08999 * 109.47271 * 149.98126 * 1 2 3 35 35 H 1.07998 * 120.00175 * 359.97438 * 3 2 1 36 36 H 1.07997 * 119.99638 * 180.22926 * 4 3 2 37 37 H 1.08998 * 109.47083 * 144.72999 * 6 5 4 38 38 H 1.09001 * 109.47007 * 24.73175 * 6 5 4 39 39 H 1.08998 * 109.47229 * 59.99948 * 7 6 5 40 40 H 1.08996 * 109.47078 * 299.99466 * 7 6 5 41 41 H 0.97001 * 119.99950 * 0.02562 * 10 8 7 42 42 H 1.08998 * 109.46953 * 59.99972 * 11 10 8 43 43 H 1.09002 * 109.46613 * 299.99861 * 11 10 8 44 44 H 1.09004 * 110.54118 * 328.72153 * 16 14 12 45 45 H 1.08995 * 110.46616 * 206.16385 * 16 14 12 46 46 H 0.97000 * 119.99961 * 354.38145 * 21 20 18 47 47 H 1.09004 * 110.40972 * 158.62513 * 26 17 16 48 48 H 1.08994 * 110.40786 * 280.94497 * 26 17 16 49 49 H 1.09001 * 109.46975 * 89.99653 * 30 29 5 50 50 H 1.08998 * 109.46662 * 209.99702 * 30 29 5 51 51 H 1.09006 * 109.47247 * 329.99834 * 30 29 5 52 52 H 1.08000 * 120.00202 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5806 1.1972 0.0034 5 6 4.2717 -0.0001 -0.0022 6 6 5.7787 -0.0002 -0.0033 7 6 6.2877 -0.1266 -1.4405 8 6 7.7948 -0.1273 -1.4415 9 8 8.4019 -0.0353 -0.3956 10 7 8.4679 -0.2291 -2.6047 11 6 9.9329 -0.2293 -2.6057 12 6 10.4419 -0.3557 -4.0430 13 1 9.7914 0.0650 -4.8098 14 6 11.2329 -1.6150 -4.4026 15 1 11.3523 -2.4048 -3.6610 16 6 11.3624 -1.9873 -5.8995 17 7 12.5586 -1.2457 -6.3619 18 6 13.5342 -1.6768 -7.2207 19 1 13.6910 -2.7345 -7.3727 20 6 14.3216 -0.7543 -7.8961 21 7 13.8705 0.4633 -8.1113 22 14 16.0210 -1.2410 -8.4993 23 1 15.9027 -2.3757 -9.4499 24 1 16.8587 -1.6493 -7.3431 25 1 16.6532 -0.0848 -9.1841 26 6 12.4566 0.0704 -5.6895 27 6 11.9521 -0.2568 -4.2674 28 1 12.6185 -0.0400 -3.4325 29 6 3.5806 -1.1972 -0.0013 30 6 4.3341 -2.5022 -0.0017 31 6 2.1981 -1.1971 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3634 -0.8898 -0.5141 35 1 1.6584 2.1326 -0.0004 36 1 4.1205 2.1325 0.0072 37 1 6.1424 -0.8418 0.5863 38 1 6.1424 0.9313 0.4304 39 1 5.9241 0.7150 -2.0301 40 1 5.9241 -1.0581 -1.8742 41 1 7.9823 -0.3015 -3.4413 42 1 10.2965 -1.0711 -2.0165 43 1 10.2966 0.7021 -2.1716 44 1 10.4791 -1.6659 -6.4514 45 1 11.5131 -3.0607 -6.0136 46 1 12.9590 0.6924 -7.8714 47 1 13.4338 0.5512 -5.6448 48 1 11.7431 0.7090 -6.2102 49 1 4.5167 -2.8166 1.0259 50 1 3.7444 -3.2619 -0.5148 51 1 5.2861 -2.3721 -0.5165 52 1 1.6580 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675533345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:44:50 Heat of formation + Delta-G solvation = 18.513580 kcal Electronic energy + Delta-G solvation = -28122.246099 eV Core-core repulsion = 24280.084090 eV Total energy + Delta-G solvation = -3842.162008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.33721 -39.68417 -38.87480 -35.39369 -34.96023 -33.57422 -32.79517 -31.66602 -30.76016 -28.15700 -27.52119 -27.37715 -26.62995 -24.80438 -23.49340 -22.35924 -21.21236 -20.76221 -20.27954 -19.78900 -19.41332 -17.49114 -17.31646 -16.55231 -16.20773 -15.87452 -15.54110 -15.12431 -14.79473 -14.44470 -14.26371 -13.93019 -13.88634 -13.58480 -13.56275 -13.45556 -13.26740 -13.09701 -12.98473 -12.86356 -12.63089 -12.53196 -12.36341 -12.00938 -11.71483 -11.66216 -11.51709 -11.18868 -11.08595 -10.93850 -10.72397 -10.57305 -10.50903 -10.08806 -10.03584 -9.64576 -9.57582 -9.19930 -9.07188 -9.04247 -8.72042 -8.51007 -7.02766 -6.16565 -3.22734 0.98296 1.06780 2.52313 3.02406 3.39147 3.47376 3.51539 3.69317 3.98646 4.35616 4.40090 4.53167 4.54307 4.60637 4.68711 4.74035 4.76617 4.89182 4.97436 5.02755 5.13427 5.17535 5.19677 5.20428 5.25037 5.30123 5.34185 5.36477 5.41476 5.45114 5.53653 5.57532 5.62393 5.73641 5.77425 5.79759 5.84996 5.86688 5.95247 5.95729 6.14197 6.25929 6.27901 6.36668 6.38933 6.53050 6.55445 6.70859 6.73930 6.94576 6.96686 7.39094 7.71659 8.10527 8.41339 8.93660 9.74626 10.37842 11.19115 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027505 B = 0.001486 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.754636 B =18838.061470 C =18923.343823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.108 4.108 5 C -0.088 4.088 6 C -0.065 4.065 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.544 6.544 10 N -0.725 5.725 11 C 0.154 3.846 12 C -0.146 4.146 13 H 0.103 0.897 14 C -0.167 4.167 15 H 0.105 0.895 16 C 0.153 3.847 17 N -0.598 5.598 18 C -0.332 4.332 19 H 0.064 0.936 20 C -0.025 4.025 21 N -0.917 5.917 22 Si 1.070 2.930 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.284 1.284 26 C 0.164 3.836 27 C -0.159 4.159 28 H 0.107 0.893 29 C -0.076 4.076 30 C -0.121 4.121 31 C -0.121 4.121 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.402 0.598 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.023 0.977 45 H 0.052 0.948 46 H 0.268 0.732 47 H 0.067 0.933 48 H 0.026 0.974 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.071 0.929 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.892 -1.028 17.160 31.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.126 4.126 5 C -0.088 4.088 6 C -0.102 4.102 7 C -0.176 4.176 8 C 0.297 3.703 9 O -0.422 6.422 10 N -0.377 5.377 11 C 0.031 3.969 12 C -0.165 4.165 13 H 0.121 0.879 14 C -0.187 4.187 15 H 0.123 0.877 16 C 0.027 3.973 17 N -0.322 5.322 18 C -0.460 4.460 19 H 0.082 0.918 20 C -0.227 4.227 21 N -0.558 5.558 22 Si 0.899 3.101 23 H -0.219 1.219 24 H -0.220 1.220 25 H -0.210 1.210 26 C 0.038 3.962 27 C -0.180 4.180 28 H 0.125 0.875 29 C -0.076 4.076 30 C -0.177 4.177 31 C -0.139 4.139 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.236 0.764 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.090 0.910 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.912 -0.470 17.033 29.362 hybrid contribution -1.700 -0.622 0.330 1.840 sum -25.612 -1.092 17.363 30.962 Atomic orbital electron populations 1.20789 0.91306 1.02745 1.02257 1.19900 0.95989 0.93195 0.99742 1.21004 0.94168 0.97479 1.01699 1.21062 0.94112 0.97575 0.99820 1.19748 0.95408 0.92677 1.01000 1.20315 0.90027 1.04480 0.95410 1.21676 0.91797 1.04756 0.99351 1.20684 0.90110 0.75972 0.83583 1.90710 1.70514 1.49467 1.31486 1.46077 1.07677 1.74730 1.09218 1.20855 0.78822 1.02105 0.95150 1.22532 0.95221 1.02892 0.95883 0.87881 1.24088 1.04308 0.90779 0.99552 0.87665 1.21224 0.90383 0.96447 0.89227 1.45303 1.22847 1.12574 1.51497 1.19749 1.11670 0.93524 1.21036 0.91773 1.25889 1.05247 0.95083 0.96470 1.70775 1.18821 1.21445 1.44709 0.83457 0.75526 0.75171 0.75965 1.21909 1.21994 1.20972 1.21134 0.99126 0.89099 0.86800 1.23956 0.91539 1.01587 1.00921 0.87498 1.19786 0.93582 0.94948 0.99325 1.20897 1.00275 0.93948 1.02629 1.20902 0.93442 0.97547 1.01974 0.91258 0.91573 0.91601 0.86208 0.85969 0.89980 0.90213 0.88693 0.88713 0.76357 0.91392 0.91113 0.95933 0.92969 0.92122 0.91467 0.95657 0.90987 0.91504 0.91045 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.09 -0.66 5.88 -104.62 -0.62 -1.27 16 3 C -0.13 -0.95 9.70 -39.58 -0.38 -1.33 16 4 C -0.11 -0.86 9.68 -39.58 -0.38 -1.25 16 5 C -0.09 -0.74 5.13 -104.62 -0.54 -1.28 16 6 C -0.06 -0.56 3.94 -27.89 -0.11 -0.67 16 7 C -0.14 -1.09 5.49 -27.88 -0.15 -1.24 16 8 C 0.51 5.81 7.83 -10.98 -0.09 5.72 16 9 O -0.54 -8.32 15.98 5.56 0.09 -8.23 16 10 N -0.73 -7.78 5.56 -60.29 -0.33 -8.11 16 11 C 0.15 1.99 5.95 -4.04 -0.02 1.96 16 12 C -0.15 -2.13 5.39 -90.63 -0.49 -2.62 16 13 H 0.10 1.48 8.04 -51.93 -0.42 1.06 16 14 C -0.17 -2.87 6.76 -89.01 -0.60 -3.47 16 15 H 0.11 1.68 8.12 -51.93 -0.42 1.25 16 16 C 0.15 3.18 7.06 -2.19 -0.02 3.16 16 17 N -0.60 -15.23 3.22 -168.60 -0.54 -15.77 16 18 C -0.33 -9.41 10.19 -15.06 -0.15 -9.57 16 19 H 0.06 1.80 7.94 -52.49 -0.42 1.39 16 20 C -0.03 -0.72 5.12 -17.43 -0.09 -0.81 16 21 N -0.92 -27.67 12.82 55.49 0.71 -26.96 16 22 Si 1.07 25.27 29.98 -169.99 -5.10 20.17 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.16 3.79 5.00 -2.40 -0.01 3.78 16 27 C -0.16 -2.90 6.85 -89.22 -0.61 -3.51 16 28 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 29 C -0.08 -0.62 5.88 -104.62 -0.62 -1.23 16 30 C -0.12 -0.81 9.22 36.00 0.33 -0.48 16 31 C -0.12 -0.93 9.36 -39.58 -0.37 -1.30 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.08 0.77 6.95 -51.93 -0.36 0.41 16 38 H 0.08 0.74 8.01 -51.93 -0.42 0.33 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.64 6.91 -51.93 -0.36 0.28 16 41 H 0.40 3.40 8.40 -40.82 -0.34 3.05 16 42 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.27 8.09 6.42 -40.82 -0.26 7.83 16 47 H 0.07 1.72 7.47 -51.93 -0.39 1.33 16 48 H 0.03 0.60 7.66 -51.93 -0.40 0.20 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 51 H 0.07 0.48 5.43 -51.93 -0.28 0.20 16 52 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 418.01 15.07 6.30 6.30 Total: -1.00 -33.54 418.01 -12.19 -45.73 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.76 Total: 2.48 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -4.56 Total: -15.61 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.17 Total: -50.84 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.10 Total: 20.17 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.54 -12.19 -45.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675533345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.248 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds