Wall clock time and date at job start Sat Apr 11 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99416 * 2 1 4 4 C 1.38234 * 119.99412 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00190 * 0.02562 * 4 3 2 6 6 C 1.50711 * 119.99825 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46978 * 89.99959 * 6 5 4 8 8 O 1.21283 * 120.00287 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99828 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00044 * 179.97438 * 9 7 6 11 11 H 1.08996 * 108.96871 * 33.92067 * 10 9 7 12 12 C 1.52525 * 109.04189 * 274.99559 * 10 9 7 13 13 C 1.53817 * 111.70096 * 185.38963 * 12 10 9 14 14 C 1.51626 * 107.02221 * 57.54435 * 13 12 10 15 15 H 1.08997 * 110.50424 * 55.19860 * 14 13 12 16 16 C 1.53059 * 116.67684 * 183.74058 * 14 13 12 17 17 N 1.48660 * 103.44270 * 155.88509 * 16 14 13 18 18 C 1.36941 * 125.78119 * 155.62542 * 17 16 14 19 19 H 1.08003 * 119.99664 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99881 * 359.97438 * 18 17 16 21 21 N 1.31620 * 120.00114 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99853 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47128 * 59.99373 * 22 20 18 24 24 H 1.48495 * 109.47120 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46689 * 300.00031 * 22 20 18 26 26 C 1.48895 * 108.52288 * 335.22832 * 17 16 14 27 27 C 1.52328 * 105.53885 * 357.42989 * 26 17 16 28 28 H 1.09004 * 109.87734 * 271.58291 * 27 26 17 29 29 C 1.51439 * 117.45352 * 145.05752 * 27 26 17 30 30 C 1.38232 * 120.00110 * 0.24933 * 5 4 3 31 31 C 1.38231 * 120.00059 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47006 * 90.00557 * 1 2 3 33 33 H 1.09002 * 109.46903 * 209.99666 * 1 2 3 34 34 H 1.08996 * 109.47493 * 329.99694 * 1 2 3 35 35 H 1.07998 * 120.00611 * 0.02562 * 3 2 1 36 36 H 1.08000 * 120.00037 * 179.97438 * 4 3 2 37 37 H 1.09002 * 109.47087 * 329.99851 * 6 5 4 38 38 H 1.09001 * 109.46749 * 209.99619 * 6 5 4 39 39 H 0.97005 * 120.00063 * 359.97438 * 9 7 6 40 40 H 1.09003 * 109.03179 * 64.82598 * 12 10 9 41 41 H 1.08997 * 108.98114 * 305.92589 * 12 10 9 42 42 H 1.08997 * 109.94324 * 176.91863 * 13 12 10 43 43 H 1.08998 * 109.94516 * 298.16537 * 13 12 10 44 44 H 1.08998 * 110.63008 * 274.37883 * 16 14 13 45 45 H 1.09002 * 110.62692 * 37.39655 * 16 14 13 46 46 H 0.97001 * 119.99435 * 180.02562 * 21 20 18 47 47 H 1.09001 * 110.55437 * 238.31562 * 26 17 16 48 48 H 1.08999 * 110.10436 * 116.30390 * 26 17 16 49 49 H 1.08996 * 109.94185 * 61.33813 * 29 27 26 50 50 H 1.09005 * 110.00685 * 300.13988 * 29 27 26 51 51 H 1.07996 * 120.00054 * 179.72775 * 30 5 4 52 52 H 1.07997 * 120.00287 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 0.0001 0.0005 6 6 5.7788 0.0002 0.0005 7 6 6.2811 0.0002 1.4213 8 8 5.4929 0.0007 2.3432 9 7 7.6061 0.0008 1.6676 10 6 8.0944 0.0015 3.0488 11 1 7.4063 -0.5739 3.6682 12 6 8.1414 1.4379 3.5594 13 6 8.7716 1.5234 4.9599 14 6 10.1591 0.9204 4.8599 15 1 10.7364 1.4179 4.0806 16 6 10.9569 0.8123 6.1616 17 7 11.9163 -0.2900 5.8885 18 6 13.1226 -0.4739 6.5100 19 1 13.7483 -1.3110 6.2375 20 6 13.5412 0.4155 7.4900 21 7 12.7784 1.4354 7.8223 22 14 15.1871 0.1650 8.3373 23 1 16.2750 0.2058 7.3273 24 1 15.3988 1.2432 9.3361 25 1 15.1960 -1.1530 9.0214 26 6 11.3408 -1.1669 4.8317 27 6 9.9664 -0.5868 4.5238 28 1 9.2221 -1.0233 5.1899 29 6 9.4820 -0.6617 3.0909 30 6 3.5806 -1.1970 -0.0052 31 6 2.1982 -1.1971 -0.0005 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5138 35 1 1.6581 2.1325 0.0004 36 1 4.1204 2.1325 0.0001 37 1 6.1420 0.8902 -0.5133 38 1 6.1421 -0.8898 -0.5133 39 1 8.2364 0.0009 0.9303 40 1 7.1265 1.8335 3.6016 41 1 8.7293 2.0411 2.8676 42 1 8.8407 2.5650 5.2736 43 1 8.1712 0.9585 5.6730 44 1 11.4881 1.7422 6.3648 45 1 10.3016 0.5537 6.9933 46 1 13.0712 2.0571 8.5069 47 1 11.2442 -2.1903 5.1943 48 1 11.9680 -1.1408 3.9406 49 1 9.4058 -1.7031 2.7782 50 1 10.1698 -0.1265 2.4362 51 1 4.1206 -2.1323 -0.0097 52 1 1.6583 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980152759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:46:30 Heat of formation + Delta-G solvation = -3.164197 kcal Electronic energy + Delta-G solvation = -29262.609189 eV Core-core repulsion = 25419.507162 eV Total energy + Delta-G solvation = -3843.102027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.41763 -39.53075 -38.59299 -35.66223 -34.01848 -33.50993 -31.84017 -31.13192 -30.83127 -29.86128 -28.56312 -26.35332 -25.60260 -24.72693 -22.95129 -22.01351 -21.67194 -20.64062 -20.39891 -19.75132 -19.29880 -17.22428 -16.68906 -16.60525 -16.00837 -15.72304 -15.19839 -14.92411 -14.86882 -14.41439 -14.22519 -14.04590 -13.80233 -13.71445 -13.63381 -13.32075 -13.04872 -12.76491 -12.46051 -12.29473 -12.12099 -12.07105 -11.93315 -11.84746 -11.60182 -11.36045 -11.30942 -11.17245 -10.91411 -10.82451 -10.63139 -10.45950 -10.06935 -10.04068 -9.86848 -9.80331 -9.55300 -9.23951 -9.10376 -8.94598 -8.70633 -8.61948 -6.79431 -5.60658 -3.01488 1.08645 1.22553 2.57124 3.06538 3.42723 3.46730 3.48255 3.61249 4.37647 4.51193 4.52937 4.66941 4.73223 4.79046 4.83898 4.89508 4.93916 5.14398 5.18612 5.22935 5.26609 5.28544 5.35472 5.41635 5.48967 5.51745 5.54583 5.66641 5.71222 5.71593 5.82103 5.85822 5.86998 6.08802 6.18332 6.18611 6.22252 6.28159 6.30789 6.36701 6.38138 6.42636 6.51988 6.59438 6.66947 6.71062 6.80090 6.89512 7.07402 7.44429 7.58721 7.64613 7.90086 8.17596 8.37421 9.24424 9.85269 10.52653 11.43690 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.035868 B = 0.001765 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.446890 B =15856.125305 C =16130.066544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.070 4.070 6 C -0.103 4.103 7 C 0.512 3.488 8 O -0.530 6.530 9 N -0.728 5.728 10 C 0.149 3.851 11 H 0.084 0.916 12 C -0.123 4.123 13 C -0.099 4.099 14 C -0.114 4.114 15 H 0.068 0.932 16 C 0.164 3.836 17 N -0.608 5.608 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.144 3.856 27 C -0.105 4.105 28 H 0.069 0.931 29 C -0.105 4.105 30 C -0.101 4.101 31 C -0.120 4.120 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.398 0.602 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.013 0.987 46 H 0.252 0.748 47 H 0.025 0.975 48 H 0.023 0.977 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.031 -1.566 -20.520 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.070 4.070 6 C -0.143 4.143 7 C 0.298 3.702 8 O -0.406 6.406 9 N -0.379 5.379 10 C 0.045 3.955 11 H 0.102 0.898 12 C -0.162 4.162 13 C -0.137 4.137 14 C -0.134 4.134 15 H 0.087 0.913 16 C 0.040 3.960 17 N -0.335 5.335 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.213 1.213 26 C 0.018 3.982 27 C -0.124 4.124 28 H 0.087 0.913 29 C -0.144 4.144 30 C -0.119 4.119 31 C -0.138 4.138 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.232 0.768 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.031 0.969 46 H 0.062 0.938 47 H 0.043 0.957 48 H 0.041 0.959 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.474 -1.477 -19.673 28.432 hybrid contribution 1.208 -0.203 0.152 1.235 sum -19.266 -1.680 -19.520 27.478 Atomic orbital electron populations 1.20788 0.91330 1.02808 1.02143 1.19915 0.96012 0.93277 0.99744 1.20971 0.94067 0.97505 1.01246 1.20956 0.94249 0.97356 0.99339 1.19247 0.93574 0.93606 1.00569 1.20695 0.93376 1.05180 0.95087 1.20512 0.82401 0.76222 0.91113 1.90741 1.55181 1.48525 1.46172 1.46208 1.06773 1.75597 1.09317 1.21101 0.95669 0.97024 0.81734 0.89789 1.21890 1.00859 0.95776 0.97665 1.21256 0.96035 1.01201 0.95255 1.22391 0.95249 0.94112 1.01613 0.91329 1.21624 0.89729 0.94812 0.89844 1.45285 1.18427 1.27047 1.42753 1.19054 0.93083 1.08483 1.14287 0.90647 1.24769 0.98789 0.97825 0.99447 1.69809 1.36779 1.16232 1.34356 0.86170 0.83329 0.77030 0.79068 1.21252 1.21608 1.21302 1.21069 0.91237 0.93642 0.92210 1.21717 0.97913 0.98208 0.94605 0.91267 1.21534 0.94700 1.00091 0.98051 1.20953 0.94249 0.97338 0.99402 1.20967 0.94064 0.97499 1.01268 0.91295 0.91586 0.91578 0.86165 0.86254 0.88024 0.88037 0.76797 0.92157 0.92272 0.91648 0.91915 0.87800 0.96933 0.93773 0.95735 0.95899 0.91778 0.91343 0.86263 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.09 -0.80 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 4 C -0.10 -0.98 9.70 -39.58 -0.38 -1.37 16 5 C -0.07 -0.68 4.37 -104.62 -0.46 -1.14 16 6 C -0.10 -0.81 5.83 -29.03 -0.17 -0.98 16 7 C 0.51 5.85 7.78 -10.99 -0.09 5.77 16 8 O -0.53 -8.50 15.66 5.55 0.09 -8.41 16 9 N -0.73 -7.39 5.03 -53.61 -0.27 -7.66 16 10 C 0.15 1.91 2.44 -67.73 -0.17 1.74 16 11 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 12 C -0.12 -1.68 5.37 -26.55 -0.14 -1.83 16 13 C -0.10 -1.57 5.71 -27.00 -0.15 -1.72 16 14 C -0.11 -2.12 2.51 -89.89 -0.23 -2.35 16 15 H 0.07 1.30 8.01 -51.93 -0.42 0.88 16 16 C 0.16 3.99 5.53 -2.82 -0.02 3.97 16 17 N -0.61 -15.73 3.46 -169.87 -0.59 -16.32 16 18 C -0.22 -6.22 10.30 -15.06 -0.16 -6.38 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 21 N -0.92 -27.16 10.11 55.49 0.56 -26.60 16 22 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.14 2.99 7.04 -3.06 -0.02 2.97 16 27 C -0.10 -1.80 2.28 -90.36 -0.21 -2.01 16 28 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 29 C -0.11 -1.38 5.16 -27.08 -0.14 -1.52 16 30 C -0.10 -0.98 9.70 -39.58 -0.38 -1.37 16 31 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.40 2.85 8.61 -40.82 -0.35 2.50 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 44 H 0.10 2.85 5.93 -51.93 -0.31 2.54 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.85 8.04 -51.93 -0.42 0.44 16 51 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 52 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 409.44 15.07 6.17 6.17 Total: -1.00 -33.65 409.44 -11.89 -45.54 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -9.00 Total: 1.47 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -3.82 Total: -11.44 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.30 Total: -50.57 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.65 -11.89 -45.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980152759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.374 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds