Wall clock time and date at job start Sat Apr 11 2020 06:46:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38237 * 119.99416 * 2 1
4 4 C 1.38234 * 119.99412 * 179.97438 * 3 2 1
5 5 C 1.38236 * 120.00190 * 0.02562 * 4 3 2
6 6 C 1.50711 * 119.99825 * 179.97438 * 5 4 3
7 7 C 1.50698 * 109.46978 * 89.99959 * 6 5 4
8 8 O 1.21283 * 120.00287 * 359.97438 * 7 6 5
9 9 N 1.34770 * 119.99828 * 180.02562 * 7 6 5
10 10 C 1.46501 * 120.00044 * 179.97438 * 9 7 6
11 11 H 1.08996 * 108.96871 * 33.92067 * 10 9 7
12 12 C 1.52525 * 109.04189 * 274.99559 * 10 9 7
13 13 C 1.53817 * 111.70096 * 185.38963 * 12 10 9
14 14 C 1.51626 * 107.02221 * 57.54435 * 13 12 10
15 15 H 1.08997 * 110.50424 * 55.19860 * 14 13 12
16 16 C 1.53059 * 116.67684 * 183.74058 * 14 13 12
17 17 N 1.48660 * 103.44270 * 155.88509 * 16 14 13
18 18 C 1.36941 * 125.78119 * 155.62542 * 17 16 14
19 19 H 1.08003 * 119.99664 * 179.97438 * 18 17 16
20 20 C 1.38810 * 119.99881 * 359.97438 * 18 17 16
21 21 N 1.31620 * 120.00114 * 0.02562 * 20 18 17
22 22 Si 1.86806 * 119.99853 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.47128 * 59.99373 * 22 20 18
24 24 H 1.48495 * 109.47120 * 179.97438 * 22 20 18
25 25 H 1.48506 * 109.46689 * 300.00031 * 22 20 18
26 26 C 1.48895 * 108.52288 * 335.22832 * 17 16 14
27 27 C 1.52328 * 105.53885 * 357.42989 * 26 17 16
28 28 H 1.09004 * 109.87734 * 271.58291 * 27 26 17
29 29 C 1.51439 * 117.45352 * 145.05752 * 27 26 17
30 30 C 1.38232 * 120.00110 * 0.24933 * 5 4 3
31 31 C 1.38231 * 120.00059 * 180.02562 * 2 1 3
32 32 H 1.08997 * 109.47006 * 90.00557 * 1 2 3
33 33 H 1.09002 * 109.46903 * 209.99666 * 1 2 3
34 34 H 1.08996 * 109.47493 * 329.99694 * 1 2 3
35 35 H 1.07998 * 120.00611 * 0.02562 * 3 2 1
36 36 H 1.08000 * 120.00037 * 179.97438 * 4 3 2
37 37 H 1.09002 * 109.47087 * 329.99851 * 6 5 4
38 38 H 1.09001 * 109.46749 * 209.99619 * 6 5 4
39 39 H 0.97005 * 120.00063 * 359.97438 * 9 7 6
40 40 H 1.09003 * 109.03179 * 64.82598 * 12 10 9
41 41 H 1.08997 * 108.98114 * 305.92589 * 12 10 9
42 42 H 1.08997 * 109.94324 * 176.91863 * 13 12 10
43 43 H 1.08998 * 109.94516 * 298.16537 * 13 12 10
44 44 H 1.08998 * 110.63008 * 274.37883 * 16 14 13
45 45 H 1.09002 * 110.62692 * 37.39655 * 16 14 13
46 46 H 0.97001 * 119.99435 * 180.02562 * 21 20 18
47 47 H 1.09001 * 110.55437 * 238.31562 * 26 17 16
48 48 H 1.08999 * 110.10436 * 116.30390 * 26 17 16
49 49 H 1.08996 * 109.94185 * 61.33813 * 29 27 26
50 50 H 1.09005 * 110.00685 * 300.13988 * 29 27 26
51 51 H 1.07996 * 120.00054 * 179.72775 * 30 5 4
52 52 H 1.07997 * 120.00287 * 359.97438 * 31 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1981 1.1972 0.0000
4 6 3.5804 1.1972 0.0005
5 6 4.2716 0.0001 0.0005
6 6 5.7788 0.0002 0.0005
7 6 6.2811 0.0002 1.4213
8 8 5.4929 0.0007 2.3432
9 7 7.6061 0.0008 1.6676
10 6 8.0944 0.0015 3.0488
11 1 7.4063 -0.5739 3.6682
12 6 8.1414 1.4379 3.5594
13 6 8.7716 1.5234 4.9599
14 6 10.1591 0.9204 4.8599
15 1 10.7364 1.4179 4.0806
16 6 10.9569 0.8123 6.1616
17 7 11.9163 -0.2900 5.8885
18 6 13.1226 -0.4739 6.5100
19 1 13.7483 -1.3110 6.2375
20 6 13.5412 0.4155 7.4900
21 7 12.7784 1.4354 7.8223
22 14 15.1871 0.1650 8.3373
23 1 16.2750 0.2058 7.3273
24 1 15.3988 1.2432 9.3361
25 1 15.1960 -1.1530 9.0214
26 6 11.3408 -1.1669 4.8317
27 6 9.9664 -0.5868 4.5238
28 1 9.2221 -1.0233 5.1899
29 6 9.4820 -0.6617 3.0909
30 6 3.5806 -1.1970 -0.0052
31 6 2.1982 -1.1971 -0.0005
32 1 -0.3633 -0.0001 -1.0276
33 1 -0.3633 -0.8900 0.5138
34 1 -0.3634 0.8899 0.5138
35 1 1.6581 2.1325 0.0004
36 1 4.1204 2.1325 0.0001
37 1 6.1420 0.8902 -0.5133
38 1 6.1421 -0.8898 -0.5133
39 1 8.2364 0.0009 0.9303
40 1 7.1265 1.8335 3.6016
41 1 8.7293 2.0411 2.8676
42 1 8.8407 2.5650 5.2736
43 1 8.1712 0.9585 5.6730
44 1 11.4881 1.7422 6.3648
45 1 10.3016 0.5537 6.9933
46 1 13.0712 2.0571 8.5069
47 1 11.2442 -2.1903 5.1943
48 1 11.9680 -1.1408 3.9406
49 1 9.4058 -1.7031 2.7782
50 1 10.1698 -0.1265 2.4362
51 1 4.1206 -2.1323 -0.0097
52 1 1.6583 -2.1324 -0.0005
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000980152759.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:29
Heat of formation + Delta-G solvation = -21.822119 kcal
Electronic energy + Delta-G solvation = -29263.418257 eV
Core-core repulsion = 25419.507162 eV
Total energy + Delta-G solvation = -3843.911096 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 1.55 seconds
Orbital eigenvalues (eV)
-41.39358 -40.53237 -39.63696 -37.07454 -34.98661 -34.67092 -33.52001 -32.10323
-31.77621 -30.92566 -29.93892 -27.80250 -26.92430 -25.96093 -23.60532 -23.56103
-22.59689 -21.63979 -21.50165 -21.29224 -20.62525 -18.77511 -18.06809 -17.41217
-16.87158 -16.69883 -16.52190 -15.92950 -15.87949 -15.77988 -15.59641 -15.32679
-14.86413 -14.83469 -14.43205 -14.26331 -14.10331 -13.75634 -13.61886 -13.51511
-13.44488 -13.21401 -13.09487 -12.91478 -12.73503 -12.71160 -12.65838 -12.61903
-12.12551 -11.98115 -11.94841 -11.78651 -11.74589 -11.69471 -11.47971 -11.19931
-10.87640 -10.77083 -10.67299 -9.98336 -9.77399 -9.35853 -8.87369 -7.75109
-5.18968 0.42384 0.55350 1.46264 1.49801 1.56163 1.72772 2.22628
2.50726 2.92405 3.34490 3.58199 3.64338 3.69908 3.74705 3.91383
3.93881 4.09185 4.12122 4.15526 4.18046 4.32707 4.37638 4.46694
4.49538 4.57419 4.60728 4.66947 4.67034 4.70371 4.72997 4.79067
4.83925 4.88576 4.96472 5.00129 5.01697 5.07705 5.16219 5.21816
5.22978 5.26809 5.32232 5.38844 5.46997 5.53187 5.56341 5.58983
5.70582 5.73929 5.74604 5.84567 6.17286 6.30093 6.67018 7.10357
7.37205 7.77323 8.44602 9.27079
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.035868 B = 0.001765 C = 0.001735
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 780.446890 B =15856.125305 C =16130.066544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.101 4.101
3 C -0.135 4.135
4 C -0.117 4.117
5 C -0.086 4.086
6 C -0.094 4.094
7 C 0.511 3.489
8 O -0.581 6.581
9 N -0.713 5.713
10 C 0.157 3.843
11 H 0.061 0.939
12 C -0.112 4.112
13 C -0.094 4.094
14 C -0.100 4.100
15 H 0.073 0.927
16 C 0.167 3.833
17 N -0.633 5.633
18 C -0.238 4.238
19 H 0.081 0.919
20 C -0.071 4.071
21 N -0.951 5.951
22 Si 0.980 3.020
23 H -0.275 1.275
24 H -0.294 1.294
25 H -0.280 1.280
26 C 0.139 3.861
27 C -0.092 4.092
28 H 0.059 0.941
29 C -0.092 4.092
30 C -0.117 4.117
31 C -0.134 4.134
32 H 0.080 0.920
33 H 0.070 0.930
34 H 0.070 0.930
35 H 0.134 0.866
36 H 0.129 0.871
37 H 0.128 0.872
38 H 0.129 0.871
39 H 0.418 0.582
40 H 0.054 0.946
41 H 0.075 0.925
42 H 0.065 0.935
43 H 0.052 0.948
44 H 0.069 0.931
45 H -0.019 1.019
46 H 0.246 0.754
47 H 0.024 0.976
48 H 0.037 0.963
49 H 0.084 0.916
50 H 0.086 0.914
51 H 0.130 0.870
52 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.108 -2.203 -23.272 30.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.101 4.101
3 C -0.153 4.153
4 C -0.135 4.135
5 C -0.086 4.086
6 C -0.134 4.134
7 C 0.299 3.701
8 O -0.461 6.461
9 N -0.365 5.365
10 C 0.052 3.948
11 H 0.080 0.920
12 C -0.151 4.151
13 C -0.133 4.133
14 C -0.120 4.120
15 H 0.091 0.909
16 C 0.043 3.957
17 N -0.360 5.360
18 C -0.367 4.367
19 H 0.099 0.901
20 C -0.263 4.263
21 N -0.601 5.601
22 Si 0.809 3.191
23 H -0.201 1.201
24 H -0.220 1.220
25 H -0.206 1.206
26 C 0.015 3.985
27 C -0.111 4.111
28 H 0.077 0.923
29 C -0.130 4.130
30 C -0.135 4.135
31 C -0.152 4.152
32 H 0.099 0.901
33 H 0.089 0.911
34 H 0.089 0.911
35 H 0.152 0.848
36 H 0.147 0.853
37 H 0.146 0.854
38 H 0.147 0.853
39 H 0.255 0.745
40 H 0.073 0.927
41 H 0.094 0.906
42 H 0.084 0.916
43 H 0.071 0.929
44 H 0.087 0.913
45 H -0.001 1.001
46 H 0.055 0.945
47 H 0.042 0.958
48 H 0.055 0.945
49 H 0.103 0.897
50 H 0.105 0.895
51 H 0.148 0.852
52 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -20.537 -2.138 -22.487 30.529
hybrid contribution 1.203 -0.035 1.042 1.591
sum -19.334 -2.173 -21.446 28.956
Atomic orbital electron populations
1.20821 0.89721 1.03303 1.03056 1.20269 0.97416 0.93211 0.99253
1.21264 0.94342 0.98341 1.01306 1.21229 0.94742 0.97967 0.99565
1.19531 0.94827 0.93612 1.00678 1.20730 0.92066 1.07796 0.92779
1.21131 0.82091 0.74786 0.92070 1.90731 1.56453 1.50865 1.48014
1.45986 1.06980 1.74878 1.08668 1.20791 0.95054 0.95921 0.83072
0.92048 1.21768 1.00404 0.96757 0.96161 1.21197 0.94348 1.00791
0.96955 1.22153 0.95802 0.95799 0.98231 0.90868 1.21377 0.89433
0.92984 0.91948 1.45643 1.18224 1.28468 1.43637 1.19468 0.94217
1.08502 1.14531 0.90131 1.25641 1.02372 0.97814 1.00487 1.70082
1.38346 1.16965 1.34678 0.85121 0.79367 0.76763 0.77894 1.20078
1.22047 1.20639 1.21260 0.93093 0.92990 0.91201 1.21606 0.95776
0.96223 0.97515 0.92260 1.21426 0.94722 1.01783 0.95044 1.21233
0.94735 0.97958 0.99561 1.21266 0.94349 0.98333 1.01288 0.90094
0.91077 0.91105 0.84841 0.85325 0.85356 0.85269 0.74507 0.92723
0.90608 0.91638 0.92941 0.91292 1.00107 0.94477 0.95756 0.94508
0.89737 0.89538 0.85229 0.84795
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16
2 C -0.10 -1.73 5.88 -19.87 -0.12 -1.85 16
3 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16
4 C -0.12 -2.15 9.70 22.27 0.22 -1.93 16
5 C -0.09 -1.55 4.37 -19.86 -0.09 -1.64 16
6 C -0.09 -1.19 5.83 29.10 0.17 -1.02 16
7 C 0.51 10.46 7.78 87.66 0.68 11.14 16
8 O -0.58 -18.10 15.66 -3.04 -0.05 -18.15 16
9 N -0.71 -12.09 5.03 -441.93 -2.22 -14.31 16
10 C 0.16 3.65 2.44 45.12 0.11 3.76 16
11 H 0.06 1.77 7.51 -2.39 -0.02 1.75 16
12 C -0.11 -2.86 5.37 30.71 0.16 -2.69 16
13 C -0.09 -2.97 5.71 30.42 0.17 -2.80 16
14 C -0.10 -3.71 2.51 -10.32 -0.03 -3.74 16
15 H 0.07 2.67 8.01 -2.39 -0.02 2.65 16
16 C 0.17 8.44 5.53 85.98 0.48 8.92 16
17 N -0.63 -33.29 3.46 -691.34 -2.40 -35.69 16
18 C -0.24 -13.62 10.30 84.03 0.87 -12.75 16
19 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16
20 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16
21 N -0.95 -57.95 10.11 21.65 0.22 -57.73 16
22 Si 0.98 46.36 29.55 68.60 2.03 48.38 16
23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
24 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16
25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
26 C 0.14 5.66 7.04 85.69 0.60 6.26 16
27 C -0.09 -3.05 2.28 -10.63 -0.02 -3.07 16
28 H 0.06 2.09 7.92 -2.39 -0.02 2.08 16
29 C -0.09 -2.10 5.16 30.37 0.16 -1.95 16
30 C -0.12 -2.13 9.70 22.27 0.22 -1.91 16
31 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16
32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
33 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16
34 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16
35 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16
36 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16
37 H 0.13 0.95 8.09 -2.39 -0.02 0.93 16
38 H 0.13 0.92 8.08 -2.39 -0.02 0.90 16
39 H 0.42 4.04 8.61 -92.70 -0.80 3.25 16
40 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16
41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
43 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16
44 H 0.07 3.97 5.93 -2.39 -0.01 3.96 16
45 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16
46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16
47 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16
48 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16
49 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16
50 H 0.09 1.76 8.04 -2.38 -0.02 1.74 16
51 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16
52 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16
Total: -1.00 -76.40 409.44 2.86 -73.54
By element:
Atomic # 1 Polarization: 17.64 SS G_CDS: 0.09 Total: 17.74 kcal
Atomic # 6 Polarization: -18.97 SS G_CDS: 5.19 Total: -13.78 kcal
Atomic # 7 Polarization: -103.33 SS G_CDS: -4.40 Total: -107.73 kcal
Atomic # 8 Polarization: -18.10 SS G_CDS: -0.05 Total: -18.15 kcal
Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal
Total: -76.40 2.86 -73.54 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000980152759.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.716 kcal
(2) G-P(sol) polarization free energy of solvation -76.401 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.685 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.538 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.822 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.55 seconds