Wall clock time and date at job start Sat Apr 11 2020 06:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46945 * 2 1 4 4 C 1.38242 * 120.00234 * 90.00086 * 3 2 1 5 5 C 1.38236 * 119.99702 * 179.97438 * 4 3 2 6 6 C 1.38226 * 120.00140 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99937 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47464 * 89.99935 * 7 6 5 9 9 O 1.21280 * 119.99764 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00361 * 180.02562 * 8 7 6 11 11 C 1.45947 * 118.25869 * 0.02562 * 10 8 7 12 12 C 1.53143 * 108.20242 * 148.95978 * 11 10 8 13 13 C 1.52826 * 108.60397 * 61.92886 * 12 11 10 14 14 H 1.08998 * 109.63051 * 62.92682 * 13 12 11 15 15 C 1.51789 * 111.59689 * 301.25819 * 13 12 11 16 16 H 1.09004 * 107.16099 * 143.18811 * 15 13 12 17 17 C 1.54126 * 105.57000 * 256.31484 * 15 13 12 18 18 C 1.54221 * 103.28792 * 334.26485 * 17 15 13 19 19 N 1.46882 * 106.56170 * 27.30293 * 18 17 15 20 20 C 1.36942 * 125.45764 * 161.34927 * 19 18 17 21 21 H 1.07989 * 120.00268 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99296 * 0.02562 * 20 19 18 23 23 N 1.31618 * 120.00921 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99671 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46684 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47312 * 119.99614 * 24 22 20 27 27 H 1.48494 * 109.47136 * 240.00174 * 24 22 20 28 28 C 1.44369 * 118.26104 * 179.97438 * 10 8 7 29 29 C 1.38237 * 120.00651 * 0.27486 * 6 5 4 30 30 C 1.38232 * 119.99913 * 269.97341 * 3 2 1 31 31 H 1.08998 * 109.47278 * 59.99713 * 1 2 3 32 32 H 1.09004 * 109.47216 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47277 * 300.00182 * 1 2 3 34 34 H 1.08993 * 109.47417 * 239.99442 * 2 1 3 35 35 H 1.09002 * 109.46843 * 119.99477 * 2 1 3 36 36 H 1.07998 * 119.99590 * 359.97438 * 4 3 2 37 37 H 1.08004 * 119.99598 * 179.97438 * 5 4 3 38 38 H 1.09005 * 109.46807 * 329.99526 * 7 6 5 39 39 H 1.09005 * 109.47454 * 210.00139 * 7 6 5 40 40 H 1.08997 * 109.71703 * 29.27930 * 11 10 8 41 41 H 1.09003 * 109.74822 * 268.65479 * 11 10 8 42 42 H 1.09000 * 109.61524 * 302.19777 * 12 11 10 43 43 H 1.09000 * 109.76518 * 181.75627 * 12 11 10 44 44 H 1.09002 * 110.68575 * 215.81079 * 17 15 13 45 45 H 1.09001 * 110.65480 * 92.70412 * 17 15 13 46 46 H 1.09002 * 110.04871 * 268.01168 * 18 17 15 47 47 H 1.09005 * 110.04397 * 146.59328 * 18 17 15 48 48 H 0.96995 * 120.00569 * 180.02562 * 23 22 20 49 49 H 1.09002 * 107.88919 * 296.78946 * 28 10 8 50 50 H 1.08995 * 107.88887 * 52.89791 * 28 10 8 51 51 H 1.07993 * 120.00583 * 179.72794 * 29 6 5 52 52 H 1.08004 * 119.99755 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3757 1.1971 6 6 2.9553 4.0269 -0.0001 7 6 3.4587 5.4473 -0.0001 8 6 4.9656 5.4463 0.0005 9 8 5.5713 4.3956 0.0014 10 7 5.6404 6.6130 0.0010 11 6 4.8735 7.8547 0.0016 12 6 5.6826 8.9163 0.7522 13 6 6.9964 9.1460 0.0060 14 1 6.7883 9.5382 -0.9895 15 6 7.8050 7.8666 -0.1085 16 1 8.2875 7.8774 -1.0859 17 6 8.9322 7.9949 0.9347 18 6 9.1011 9.5201 1.0884 19 7 7.8004 10.1202 0.7634 20 6 7.3994 11.3829 1.1096 21 1 6.4195 11.7356 0.8241 22 6 8.2527 12.2096 1.8276 23 7 9.4469 11.7796 2.1761 24 14 7.7055 13.9320 2.3006 25 1 6.3303 14.1710 1.7937 26 1 7.7190 14.0671 3.7794 27 1 8.6323 14.9271 1.7040 28 6 7.0834 6.5681 0.0021 29 6 2.7200 3.3770 -1.1973 30 6 2.2632 2.0723 -1.1971 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0823 1.5635 2.1325 37 1 2.9036 3.8850 2.1324 38 1 3.0953 5.9616 0.8896 39 1 3.0961 5.9614 -0.8904 40 1 3.9188 7.6971 0.5033 41 1 4.7005 8.1812 -1.0239 42 1 5.8925 8.5690 1.7639 43 1 5.1183 9.8479 0.7950 44 1 9.8521 7.5416 0.5653 45 1 8.6335 7.5439 1.8810 46 1 9.8629 9.8831 0.3985 47 1 9.3793 9.7637 2.1138 48 1 10.0429 12.3571 2.6781 49 1 7.4028 6.0903 0.9284 50 1 7.3992 5.9323 -0.8249 51 1 2.8965 3.8873 -2.1325 52 1 2.0832 1.5631 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036830074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:46:29 Heat of formation + Delta-G solvation = 6.756873 kcal Electronic energy + Delta-G solvation = -29726.156313 eV Core-core repulsion = 25883.484496 eV Total energy + Delta-G solvation = -3842.671817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55525 -39.50143 -38.20532 -35.46249 -34.82467 -33.01374 -31.75596 -31.48544 -31.03273 -29.72305 -28.41381 -27.19994 -25.09328 -23.91908 -22.94072 -22.86345 -22.73856 -20.89795 -20.32144 -19.54733 -17.86229 -17.14821 -17.04903 -16.44739 -16.12622 -15.62813 -15.39994 -15.05716 -14.96344 -14.72322 -14.00822 -13.97130 -13.83151 -13.56682 -13.52077 -13.19724 -13.14557 -12.91829 -12.54622 -12.32152 -12.26002 -12.09980 -11.88087 -11.71954 -11.45645 -11.42334 -11.32884 -11.05647 -11.00304 -10.96432 -10.83169 -10.79402 -10.24093 -10.10438 -9.87274 -9.71746 -9.60769 -9.54006 -8.99696 -8.65627 -8.61808 -8.39140 -6.88749 -5.70906 -3.10368 1.19499 1.32930 2.71088 3.12058 3.36399 3.41562 3.44389 3.67695 4.43182 4.46599 4.58728 4.62871 4.70254 4.82105 4.88581 5.04242 5.06815 5.09362 5.15779 5.19679 5.25204 5.28819 5.30785 5.37959 5.41092 5.47228 5.50605 5.58748 5.61161 5.67931 5.82387 5.83837 5.91736 5.95716 5.96966 6.07783 6.09537 6.19874 6.27662 6.29879 6.39498 6.48343 6.49780 6.56193 6.62306 6.78068 6.87289 6.90151 7.00721 7.49615 7.52104 7.61386 7.82760 8.28707 8.29936 9.18601 9.79295 10.43611 11.35173 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026864 B = 0.002027 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.025028 B =13807.128470 C =14285.045344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.102 4.102 8 C 0.507 3.493 9 O -0.538 6.538 10 N -0.597 5.597 11 C 0.105 3.895 12 C -0.137 4.137 13 C 0.175 3.825 14 H 0.033 0.967 15 C -0.102 4.102 16 H 0.063 0.937 17 C -0.135 4.135 18 C 0.160 3.840 19 N -0.596 5.596 20 C -0.222 4.222 21 H 0.079 0.921 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.142 3.858 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.016 0.984 47 H 0.093 0.907 48 H 0.251 0.749 49 H 0.058 0.942 50 H 0.059 0.941 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.914 -18.487 -5.124 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.142 4.142 8 C 0.294 3.706 9 O -0.415 6.415 10 N -0.330 5.330 11 C -0.018 4.018 12 C -0.177 4.177 13 C 0.067 3.933 14 H 0.051 0.949 15 C -0.122 4.122 16 H 0.081 0.919 17 C -0.174 4.174 18 C 0.035 3.965 19 N -0.321 5.321 20 C -0.351 4.351 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.020 3.980 29 C -0.120 4.120 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.034 0.966 47 H 0.111 0.889 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.438 -18.804 -5.022 24.843 hybrid contribution -0.072 1.124 0.194 1.143 sum -15.510 -17.680 -4.828 24.010 Atomic orbital electron populations 1.21747 0.94807 1.01563 1.02211 1.20533 0.96073 0.92836 1.02778 1.19857 0.99421 0.96089 0.93272 1.20944 1.00349 0.94762 0.97442 1.20966 0.98697 0.94890 0.97427 1.19300 0.98926 0.94803 0.93578 1.20736 0.92867 0.95385 1.05173 1.20517 0.89666 0.83465 0.76917 1.90701 1.70297 1.31067 1.49435 1.47313 1.06632 1.06310 1.72726 1.21721 0.94733 0.84440 1.00899 1.22289 0.97983 0.97468 1.00007 1.20228 0.90354 0.88388 0.94322 0.94931 1.20753 0.97156 0.93415 1.00851 0.91880 1.22861 0.96290 1.01006 0.97199 1.21483 0.87120 0.85409 1.02500 1.44516 1.13006 1.11627 1.62912 1.19046 0.99442 0.87903 1.28669 0.90362 1.24802 0.96275 0.98649 1.00860 1.69895 1.07851 1.35464 1.43639 0.86038 0.77628 0.84110 0.77931 1.20517 1.21785 1.21796 1.19917 0.78885 0.97229 1.02011 1.20948 0.98872 0.94871 0.97350 1.20933 1.00455 0.94744 0.97415 0.92579 0.92521 0.92566 0.91141 0.91127 0.86280 0.86237 0.87892 0.88012 0.90601 0.91794 0.91325 0.90438 0.92072 0.92316 0.96642 0.88913 0.93784 0.92402 0.92225 0.86299 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.09 -0.84 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 5 C -0.10 -1.14 9.70 -39.59 -0.38 -1.52 16 6 C -0.07 -0.75 4.37 -104.62 -0.46 -1.21 16 7 C -0.10 -1.07 4.30 -29.03 -0.12 -1.19 16 8 C 0.51 7.27 7.60 -10.99 -0.08 7.19 16 9 O -0.54 -9.67 15.81 5.56 0.09 -9.58 16 10 N -0.60 -8.60 3.14 -178.11 -0.56 -9.16 16 11 C 0.11 1.33 5.92 -4.27 -0.03 1.31 16 12 C -0.14 -2.29 5.21 -26.75 -0.14 -2.43 16 13 C 0.17 3.39 3.22 -68.21 -0.22 3.17 16 14 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 15 C -0.10 -1.77 2.70 -92.63 -0.25 -2.02 16 16 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 17 C -0.13 -2.53 6.38 -25.50 -0.16 -2.69 16 18 C 0.16 3.80 5.67 -3.20 -0.02 3.78 16 19 N -0.60 -14.48 3.14 -164.82 -0.52 -14.99 16 20 C -0.22 -5.88 9.68 -15.06 -0.15 -6.03 16 21 H 0.08 1.98 7.51 -52.49 -0.39 1.59 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -26.37 10.17 55.49 0.56 -25.80 16 24 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.14 2.26 5.19 -7.16 -0.04 2.22 16 29 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 30 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.10 0.90 7.24 -51.93 -0.38 0.53 16 39 H 0.10 0.85 8.00 -51.93 -0.42 0.44 16 40 H 0.08 0.76 6.20 -51.93 -0.32 0.44 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.31 7.64 -51.93 -0.40 0.92 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.09 7.70 -51.93 -0.40 0.69 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.49 6.19 -51.93 -0.32 2.17 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.06 0.97 7.31 -51.93 -0.38 0.59 16 50 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 51 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 52 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 404.45 15.07 6.09 6.09 Total: -1.00 -31.67 404.45 -11.87 -43.54 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.89 Total: 0.54 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.63 Total: -7.16 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.51 Total: -49.95 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.67 -11.87 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036830074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.301 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds