Wall clock time and date at job start Sat Apr 11 2020 06:46:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50700 * 109.46945 * 2 1
4 4 C 1.38242 * 120.00234 * 90.00086 * 3 2 1
5 5 C 1.38236 * 119.99702 * 179.97438 * 4 3 2
6 6 C 1.38226 * 120.00140 * 359.97438 * 5 4 3
7 7 C 1.50704 * 119.99937 * 180.02562 * 6 5 4
8 8 C 1.50696 * 109.47464 * 89.99935 * 7 6 5
9 9 O 1.21280 * 119.99764 * 359.97438 * 8 7 6
10 10 N 1.34771 * 120.00361 * 180.02562 * 8 7 6
11 11 C 1.45947 * 118.25869 * 0.02562 * 10 8 7
12 12 C 1.53143 * 108.20242 * 148.95978 * 11 10 8
13 13 C 1.52826 * 108.60397 * 61.92886 * 12 11 10
14 14 H 1.08998 * 109.63051 * 62.92682 * 13 12 11
15 15 C 1.51789 * 111.59689 * 301.25819 * 13 12 11
16 16 H 1.09004 * 107.16099 * 143.18811 * 15 13 12
17 17 C 1.54126 * 105.57000 * 256.31484 * 15 13 12
18 18 C 1.54221 * 103.28792 * 334.26485 * 17 15 13
19 19 N 1.46882 * 106.56170 * 27.30293 * 18 17 15
20 20 C 1.36942 * 125.45764 * 161.34927 * 19 18 17
21 21 H 1.07989 * 120.00268 * 180.02562 * 20 19 18
22 22 C 1.38813 * 119.99296 * 0.02562 * 20 19 18
23 23 N 1.31618 * 120.00921 * 359.97438 * 22 20 19
24 24 Si 1.86808 * 119.99671 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.46684 * 359.97438 * 24 22 20
26 26 H 1.48504 * 109.47312 * 119.99614 * 24 22 20
27 27 H 1.48494 * 109.47136 * 240.00174 * 24 22 20
28 28 C 1.44369 * 118.26104 * 179.97438 * 10 8 7
29 29 C 1.38237 * 120.00651 * 0.27486 * 6 5 4
30 30 C 1.38232 * 119.99913 * 269.97341 * 3 2 1
31 31 H 1.08998 * 109.47278 * 59.99713 * 1 2 3
32 32 H 1.09004 * 109.47216 * 180.02562 * 1 2 3
33 33 H 1.09005 * 109.47277 * 300.00182 * 1 2 3
34 34 H 1.08993 * 109.47417 * 239.99442 * 2 1 3
35 35 H 1.09002 * 109.46843 * 119.99477 * 2 1 3
36 36 H 1.07998 * 119.99590 * 359.97438 * 4 3 2
37 37 H 1.08004 * 119.99598 * 179.97438 * 5 4 3
38 38 H 1.09005 * 109.46807 * 329.99526 * 7 6 5
39 39 H 1.09005 * 109.47454 * 210.00139 * 7 6 5
40 40 H 1.08997 * 109.71703 * 29.27930 * 11 10 8
41 41 H 1.09003 * 109.74822 * 268.65479 * 11 10 8
42 42 H 1.09000 * 109.61524 * 302.19777 * 12 11 10
43 43 H 1.09000 * 109.76518 * 181.75627 * 12 11 10
44 44 H 1.09002 * 110.68575 * 215.81079 * 17 15 13
45 45 H 1.09001 * 110.65480 * 92.70412 * 17 15 13
46 46 H 1.09002 * 110.04871 * 268.01168 * 18 17 15
47 47 H 1.09005 * 110.04397 * 146.59328 * 18 17 15
48 48 H 0.96995 * 120.00569 * 180.02562 * 23 22 20
49 49 H 1.09002 * 107.88919 * 296.78946 * 28 10 8
50 50 H 1.08995 * 107.88887 * 52.89791 * 28 10 8
51 51 H 1.07993 * 120.00583 * 179.72794 * 29 6 5
52 52 H 1.08004 * 119.99755 * 0.02562 * 30 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2627 2.0725 1.1972
5 6 2.7240 3.3757 1.1971
6 6 2.9553 4.0269 -0.0001
7 6 3.4587 5.4473 -0.0001
8 6 4.9656 5.4463 0.0005
9 8 5.5713 4.3956 0.0014
10 7 5.6404 6.6130 0.0010
11 6 4.8735 7.8547 0.0016
12 6 5.6826 8.9163 0.7522
13 6 6.9964 9.1460 0.0060
14 1 6.7883 9.5382 -0.9895
15 6 7.8050 7.8666 -0.1085
16 1 8.2875 7.8774 -1.0859
17 6 8.9322 7.9949 0.9347
18 6 9.1011 9.5201 1.0884
19 7 7.8004 10.1202 0.7634
20 6 7.3994 11.3829 1.1096
21 1 6.4195 11.7356 0.8241
22 6 8.2527 12.2096 1.8276
23 7 9.4469 11.7796 2.1761
24 14 7.7055 13.9320 2.3006
25 1 6.3303 14.1710 1.7937
26 1 7.7190 14.0671 3.7794
27 1 8.6323 14.9271 1.7040
28 6 7.0834 6.5681 0.0021
29 6 2.7200 3.3770 -1.1973
30 6 2.2632 2.0723 -1.1971
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3634 -1.0277 0.0005
33 1 -0.3634 0.5139 0.8900
34 1 1.8934 -0.5139 -0.8899
35 1 1.8933 -0.5138 0.8901
36 1 2.0823 1.5635 2.1325
37 1 2.9036 3.8850 2.1324
38 1 3.0953 5.9616 0.8896
39 1 3.0961 5.9614 -0.8904
40 1 3.9188 7.6971 0.5033
41 1 4.7005 8.1812 -1.0239
42 1 5.8925 8.5690 1.7639
43 1 5.1183 9.8479 0.7950
44 1 9.8521 7.5416 0.5653
45 1 8.6335 7.5439 1.8810
46 1 9.8629 9.8831 0.3985
47 1 9.3793 9.7637 2.1138
48 1 10.0429 12.3571 2.6781
49 1 7.4028 6.0903 0.9284
50 1 7.3992 5.9323 -0.8249
51 1 2.8965 3.8873 -2.1325
52 1 2.0832 1.5631 -2.1324
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036830074.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:28
Heat of formation + Delta-G solvation = -8.799209 kcal
Electronic energy + Delta-G solvation = -29726.830876 eV
Core-core repulsion = 25883.484496 eV
Total energy + Delta-G solvation = -3843.346380 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.70445 -40.43109 -39.51729 -36.86572 -35.54051 -34.70456 -33.25026 -32.37901
-31.77164 -31.27595 -29.90405 -28.11322 -26.79739 -25.13747 -24.06399 -23.88485
-23.60834 -22.18404 -21.64195 -20.66058 -19.21279 -18.93211 -18.22803 -17.37934
-17.10644 -16.80200 -16.59111 -16.48451 -16.12332 -15.88313 -15.57523 -14.81211
-14.74468 -14.56757 -14.47232 -14.38513 -14.15921 -14.12621 -13.84835 -13.67666
-13.34830 -13.18040 -13.03206 -12.89934 -12.88521 -12.63195 -12.55691 -12.49987
-12.32616 -12.03031 -11.94884 -11.82744 -11.66716 -11.62719 -11.59188 -11.32948
-11.17258 -10.84620 -10.69148 -9.75834 -9.56818 -9.37812 -8.86673 -7.76705
-5.17597 0.43063 0.56703 1.48225 1.48528 1.58608 1.64163 2.03939
2.50709 2.88566 3.35462 3.50574 3.67703 3.71296 3.77016 3.81643
3.91433 3.97754 4.07402 4.10487 4.18263 4.22643 4.25963 4.47583
4.48260 4.52080 4.53811 4.59103 4.61189 4.63193 4.74690 4.76273
4.78114 4.81842 4.91245 4.91605 5.04526 5.07844 5.10458 5.13843
5.20794 5.26305 5.33999 5.40414 5.50676 5.54958 5.55217 5.62875
5.67509 5.72100 5.77095 5.83088 6.16877 6.29444 6.41070 7.13600
7.19231 7.82085 8.45269 9.28548
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.026864 B = 0.002027 C = 0.001960
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.025028 B =13807.128470 C =14285.045344
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.084 4.084
3 C -0.092 4.092
4 C -0.129 4.129
5 C -0.118 4.118
6 C -0.084 4.084
7 C -0.094 4.094
8 C 0.507 3.493
9 O -0.579 6.579
10 N -0.600 5.600
11 C 0.112 3.888
12 C -0.128 4.128
13 C 0.166 3.834
14 H 0.035 0.965
15 C -0.090 4.090
16 H 0.070 0.930
17 C -0.122 4.122
18 C 0.164 3.836
19 N -0.616 5.616
20 C -0.223 4.223
21 H 0.089 0.911
22 C -0.073 4.073
23 N -0.954 5.954
24 Si 0.976 3.024
25 H -0.261 1.261
26 H -0.296 1.296
27 H -0.298 1.298
28 C 0.152 3.848
29 C -0.115 4.115
30 C -0.128 4.128
31 H 0.053 0.947
32 H 0.069 0.931
33 H 0.052 0.948
34 H 0.077 0.923
35 H 0.075 0.925
36 H 0.132 0.868
37 H 0.125 0.875
38 H 0.125 0.875
39 H 0.129 0.871
40 H 0.113 0.887
41 H 0.085 0.915
42 H 0.047 0.953
43 H 0.075 0.925
44 H 0.082 0.918
45 H 0.059 0.941
46 H -0.015 1.015
47 H 0.057 0.943
48 H 0.244 0.756
49 H 0.046 0.954
50 H 0.063 0.937
51 H 0.130 0.870
52 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.746 -19.489 -6.161 27.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.122 4.122
3 C -0.092 4.092
4 C -0.147 4.147
5 C -0.136 4.136
6 C -0.084 4.084
7 C -0.134 4.134
8 C 0.297 3.703
9 O -0.459 6.459
10 N -0.332 5.332
11 C -0.010 4.010
12 C -0.168 4.168
13 C 0.060 3.940
14 H 0.052 0.948
15 C -0.110 4.110
16 H 0.088 0.912
17 C -0.161 4.161
18 C 0.039 3.961
19 N -0.341 5.341
20 C -0.352 4.352
21 H 0.107 0.893
22 C -0.265 4.265
23 N -0.604 5.604
24 Si 0.805 3.195
25 H -0.185 1.185
26 H -0.223 1.223
27 H -0.225 1.225
28 C 0.028 3.972
29 C -0.133 4.133
30 C -0.146 4.146
31 H 0.073 0.927
32 H 0.088 0.912
33 H 0.071 0.929
34 H 0.095 0.905
35 H 0.093 0.907
36 H 0.150 0.850
37 H 0.143 0.857
38 H 0.142 0.858
39 H 0.147 0.853
40 H 0.131 0.869
41 H 0.103 0.897
42 H 0.066 0.934
43 H 0.094 0.906
44 H 0.100 0.900
45 H 0.078 0.922
46 H 0.003 0.997
47 H 0.075 0.925
48 H 0.053 0.947
49 H 0.064 0.936
50 H 0.081 0.919
51 H 0.148 0.852
52 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -18.323 -19.815 -6.084 27.665
hybrid contribution 0.814 1.378 0.487 1.673
sum -17.510 -18.436 -5.597 26.035
Atomic orbital electron populations
1.21720 0.93938 1.02371 1.01960 1.20581 0.96757 0.91487 1.03348
1.20182 0.98800 0.97167 0.93087 1.21209 1.00342 0.94798 0.98376
1.21196 0.99134 0.95496 0.97818 1.19487 0.99572 0.95522 0.93821
1.20788 0.89551 0.95551 1.07466 1.21167 0.91163 0.82485 0.75496
1.90686 1.71458 1.32456 1.51263 1.47381 1.05972 1.07201 1.72664
1.21833 0.94972 0.82217 1.01948 1.22090 0.96884 0.98849 0.98955
1.20481 0.91438 0.88095 0.94008 0.94757 1.20639 0.96535 0.93345
1.00466 0.91185 1.22705 0.98110 0.97192 0.98084 1.21220 0.86707
0.88696 0.99473 1.44802 1.13765 1.12066 1.63433 1.19449 0.99568
0.88814 1.27370 0.89313 1.25633 0.96613 1.02412 1.01837 1.70143
1.08982 1.36389 1.44863 0.85029 0.77856 0.79625 0.76973 1.18501
1.22332 1.22534 1.19670 0.80218 0.95755 1.01573 1.21209 0.98955
0.95392 0.97773 1.21226 1.00246 0.94802 0.98323 0.92743 0.91196
0.92896 0.90484 0.90666 0.84974 0.85722 0.85752 0.85259 0.86942
0.89663 0.93404 0.90610 0.89959 0.92215 0.99704 0.92521 0.94668
0.93551 0.91912 0.85210 0.84702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.52 9.89 71.98 0.71 -0.81 16
2 C -0.08 -1.09 6.06 29.85 0.18 -0.91 16
3 C -0.09 -1.67 5.13 -19.87 -0.10 -1.77 16
4 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16
5 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16
6 C -0.08 -1.75 4.37 -19.87 -0.09 -1.83 16
7 C -0.09 -1.66 4.30 29.10 0.13 -1.54 16
8 C 0.51 13.29 7.60 87.66 0.67 13.96 16
9 O -0.58 -20.05 15.81 -3.03 -0.05 -20.10 16
10 N -0.60 -15.67 3.14 -835.81 -2.62 -18.30 16
11 C 0.11 2.43 5.92 86.53 0.51 2.95 16
12 C -0.13 -4.01 5.21 30.58 0.16 -3.85 16
13 C 0.17 6.26 3.22 44.39 0.14 6.41 16
14 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16
15 C -0.09 -3.04 2.70 -12.09 -0.03 -3.07 16
16 H 0.07 2.26 8.10 -2.38 -0.02 2.24 16
17 C -0.12 -4.59 6.38 31.39 0.20 -4.39 16
18 C 0.16 8.12 5.67 86.72 0.49 8.61 16
19 N -0.62 -30.27 3.14 -675.38 -2.12 -32.39 16
20 C -0.22 -11.87 9.68 84.03 0.81 -11.05 16
21 H 0.09 4.42 7.51 -2.92 -0.02 4.40 16
22 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16
23 N -0.95 -56.82 10.17 21.65 0.22 -56.60 16
24 Si 0.98 44.83 29.55 68.60 2.03 46.86 16
25 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16
26 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16
27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16
28 C 0.15 4.57 5.19 85.49 0.44 5.01 16
29 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16
30 C -0.13 -2.36 9.70 22.27 0.22 -2.15 16
31 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16
32 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16
33 H 0.05 0.59 8.14 -2.38 -0.02 0.58 16
34 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16
35 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16
36 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16
37 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16
38 H 0.12 1.66 7.24 -2.38 -0.02 1.64 16
39 H 0.13 1.57 8.00 -2.38 -0.02 1.55 16
40 H 0.11 1.69 6.20 -2.39 -0.01 1.67 16
41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
43 H 0.08 2.40 7.64 -2.39 -0.02 2.38 16
44 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16
45 H 0.06 2.23 7.70 -2.39 -0.02 2.21 16
46 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16
47 H 0.06 3.21 6.19 -2.38 -0.01 3.19 16
48 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16
49 H 0.05 1.51 7.31 -2.39 -0.02 1.50 16
50 H 0.06 1.87 7.95 -2.39 -0.02 1.86 16
51 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16
52 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16
Total: -1.00 -71.30 404.45 3.90 -67.41
By element:
Atomic # 1 Polarization: 16.88 SS G_CDS: 0.88 Total: 17.76 kcal
Atomic # 6 Polarization: -10.19 SS G_CDS: 5.56 Total: -4.64 kcal
Atomic # 7 Polarization: -102.76 SS G_CDS: -4.52 Total: -107.29 kcal
Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.10 kcal
Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal
Total: -71.30 3.90 -67.41 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036830074.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.607 kcal
(2) G-P(sol) polarization free energy of solvation -71.303 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.695 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.799 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds