Wall clock time and date at job start Sat Apr 11 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47175 * 2 1 4 4 C 1.38234 * 120.00045 * 90.00065 * 3 2 1 5 5 C 1.38237 * 120.00290 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99721 * 359.94747 * 5 4 3 7 7 C 1.50695 * 120.00026 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47112 * 90.00241 * 7 6 5 9 9 O 1.21271 * 120.00107 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99605 * 180.02562 * 8 7 6 11 11 C 1.46951 * 120.43847 * 179.97438 * 10 8 7 12 12 C 1.53593 * 108.52798 * 125.72437 * 11 10 8 13 13 H 1.08998 * 110.59777 * 172.77123 * 12 11 10 14 14 C 1.53369 * 108.68595 * 294.36273 * 12 11 10 15 15 C 1.53007 * 109.27201 * 60.30010 * 14 12 11 16 16 C 1.53007 * 109.80054 * 60.56533 * 15 14 12 17 17 C 1.53370 * 109.25252 * 299.42421 * 16 15 14 18 18 H 1.08998 * 110.59526 * 178.14430 * 17 16 15 19 19 C 1.46941 * 120.44855 * 359.97438 * 10 8 7 20 20 N 1.47566 * 107.98751 * 56.37731 * 17 16 15 21 21 C 1.36936 * 121.60911 * 122.25605 * 20 17 16 22 22 H 1.08006 * 119.99698 * 206.85727 * 21 20 17 23 23 C 1.38809 * 120.00342 * 26.85503 * 21 20 17 24 24 N 1.31619 * 119.99678 * 18.53643 * 23 21 20 25 25 Si 1.86805 * 120.00262 * 198.53564 * 23 21 20 26 26 H 1.48492 * 109.46901 * 60.00133 * 25 23 21 27 27 H 1.48498 * 109.47028 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47100 * 300.00042 * 25 23 21 29 29 C 1.38231 * 119.99730 * 0.28073 * 6 5 4 30 30 C 1.38235 * 119.99864 * 269.97452 * 3 2 1 31 31 H 1.08992 * 109.47352 * 300.00571 * 1 2 3 32 32 H 1.09000 * 109.46831 * 60.00471 * 1 2 3 33 33 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46949 * 239.99671 * 2 1 3 35 35 H 1.08999 * 109.46624 * 120.00032 * 2 1 3 36 36 H 1.08003 * 120.00237 * 359.96828 * 4 3 2 37 37 H 1.07993 * 120.00047 * 179.97438 * 5 4 3 38 38 H 1.09008 * 109.47078 * 329.99847 * 7 6 5 39 39 H 1.09002 * 109.47190 * 210.00181 * 7 6 5 40 40 H 1.09001 * 109.62855 * 6.01378 * 11 10 8 41 41 H 1.09001 * 109.78526 * 245.53275 * 11 10 8 42 42 H 1.09006 * 109.50216 * 180.23662 * 14 12 11 43 43 H 1.08994 * 109.50468 * 300.35414 * 14 12 11 44 44 H 1.09004 * 109.41161 * 300.46412 * 15 14 12 45 45 H 1.09001 * 109.36151 * 180.63776 * 15 14 12 46 46 H 1.08994 * 109.51032 * 179.48505 * 16 15 14 47 47 H 1.09001 * 109.53907 * 59.37277 * 16 15 14 48 48 H 1.09010 * 109.62041 * 353.98033 * 19 10 8 49 49 H 1.09000 * 109.62481 * 114.54117 * 19 10 8 50 50 H 0.97007 * 120.00025 * 179.97438 * 24 23 21 51 51 H 1.08003 * 120.00005 * 179.72633 * 29 6 5 52 52 H 1.07993 * 120.00334 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1972 6 6 2.9540 4.0274 0.0000 7 6 3.4563 5.4481 0.0000 8 6 4.9633 5.4481 0.0006 9 8 5.5697 4.3979 0.0014 10 7 5.6371 6.6154 0.0012 11 6 7.1066 6.6267 0.0023 12 6 7.5890 7.4809 -1.1795 13 1 8.6695 7.6179 -1.1378 14 6 7.1833 6.7866 -2.4855 15 6 5.6599 6.6522 -2.5338 16 6 5.0154 8.0391 -2.4875 17 6 5.4125 8.7379 -1.1813 18 1 4.9911 9.7423 -1.1404 19 6 4.9123 7.8936 0.0007 20 7 6.8862 8.7768 -1.1150 21 6 7.5685 9.9584 -0.9993 22 1 8.5783 10.0378 -1.3741 23 6 6.9623 11.0542 -0.4003 24 7 5.9086 10.8839 0.3697 25 14 7.6422 12.7703 -0.6870 26 1 7.5977 13.0843 -2.1377 27 1 6.8226 13.7585 0.0592 28 1 9.0471 12.8322 -0.2099 29 6 2.7191 3.3773 -1.1971 30 6 2.2632 2.0722 -1.1972 31 1 -0.3633 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0823 1.5635 2.1325 37 1 2.9027 3.8851 2.1325 38 1 3.0926 5.9622 0.8898 39 1 3.0933 5.9619 -0.8902 40 1 7.4807 5.6086 -0.1050 41 1 7.4715 7.0543 0.9362 42 1 7.5233 7.3803 -3.3341 43 1 7.6376 5.7968 -2.5278 44 1 5.3206 6.0662 -1.6795 45 1 5.3706 6.1487 -3.4563 46 1 3.9310 7.9383 -2.5314 47 1 5.3607 8.6300 -3.3359 48 1 3.8436 7.7083 -0.1078 49 1 5.1020 8.4223 0.9348 50 1 5.4851 11.6496 0.7886 51 1 2.8953 3.8877 -2.1324 52 1 2.0833 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039934872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:44:52 Heat of formation + Delta-G solvation = 26.153867 kcal Electronic energy + Delta-G solvation = -31346.085944 eV Core-core repulsion = 27504.255243 eV Total energy + Delta-G solvation = -3841.830701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.68109 -39.37712 -37.61404 -34.66194 -33.83098 -32.97025 -32.12009 -31.05595 -30.86555 -30.24383 -27.72823 -26.40089 -25.47125 -23.72551 -23.13396 -22.69381 -21.64224 -21.25150 -20.60689 -19.26905 -18.25486 -17.11018 -16.33179 -16.04629 -15.67074 -15.36849 -15.03435 -14.75662 -14.57823 -14.09626 -13.85931 -13.81335 -13.55159 -13.41569 -13.23076 -13.14321 -12.87706 -12.75025 -12.56847 -12.19601 -12.09982 -11.96526 -11.81396 -11.71861 -11.35108 -11.28126 -11.06017 -10.96974 -10.82942 -10.80709 -10.72499 -10.37013 -10.18700 -10.11759 -10.04596 -9.60251 -9.51274 -9.20832 -8.83090 -8.68167 -8.42308 -7.75060 -6.65709 -5.90304 -3.29418 1.37510 1.49558 3.06017 3.33510 3.39548 3.41223 3.51341 3.91062 4.41746 4.63153 4.73592 4.85675 4.99561 5.03826 5.07029 5.17907 5.19700 5.27122 5.35620 5.37633 5.50655 5.62763 5.63416 5.67024 5.69049 5.72126 5.74760 5.82051 5.84974 5.93541 5.96676 6.03256 6.12489 6.13712 6.24913 6.35614 6.40088 6.45795 6.46953 6.51941 6.60349 6.63466 6.66994 6.69768 6.72887 6.85931 7.01637 7.06804 7.11289 7.23401 7.48916 7.70648 8.03616 8.30821 8.66505 9.08530 9.70622 10.32162 11.18381 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.002656 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.980583 B =10541.545010 C =10785.537677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.059 4.059 7 C -0.106 4.106 8 C 0.514 3.486 9 O -0.552 6.552 10 N -0.590 5.590 11 C 0.102 3.898 12 C 0.153 3.847 13 H 0.077 0.923 14 C -0.121 4.121 15 C -0.139 4.139 16 C -0.133 4.133 17 C 0.178 3.822 18 H 0.116 0.884 19 C 0.099 3.901 20 N -0.579 5.579 21 C -0.246 4.246 22 H 0.067 0.933 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.904 3.096 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.284 1.284 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.087 0.913 50 H 0.255 0.745 51 H 0.119 0.881 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -14.759 -0.902 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.059 4.059 7 C -0.146 4.146 8 C 0.303 3.697 9 O -0.432 6.432 10 N -0.323 5.323 11 C -0.023 4.023 12 C 0.045 3.955 13 H 0.095 0.905 14 C -0.160 4.160 15 C -0.177 4.177 16 C -0.172 4.172 17 C 0.071 3.929 18 H 0.133 0.867 19 C -0.024 4.024 20 N -0.300 5.300 21 C -0.375 4.375 22 H 0.084 0.916 23 C -0.195 4.195 24 N -0.547 5.547 25 Si 0.734 3.266 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.210 1.210 29 C -0.120 4.120 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.065 0.935 51 H 0.137 0.863 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.645 -15.119 -0.787 17.950 hybrid contribution 0.371 1.157 -0.141 1.223 sum -9.274 -13.962 -0.928 16.786 Atomic orbital electron populations 1.21746 0.94902 1.01446 1.02218 1.20517 0.95999 0.92935 1.02653 1.19819 0.99808 0.96030 0.93295 1.20910 1.00565 0.94775 0.97326 1.20958 0.98851 0.94842 0.97443 1.19333 0.98266 0.94856 0.93471 1.20779 0.93608 0.95015 1.05172 1.20108 0.89395 0.83659 0.76513 1.90671 1.70081 1.31080 1.51330 1.48263 1.07373 1.06128 1.70511 1.22189 0.79276 1.00603 1.00199 1.21225 0.96199 0.86589 0.91445 0.90494 1.21901 0.96139 0.98802 0.99177 1.22101 0.96288 0.98006 1.01302 1.22137 0.97799 0.96473 1.00820 1.21093 0.84630 0.98640 0.88585 0.86683 1.22483 0.93788 0.82962 1.03186 1.44350 1.00704 1.00353 1.84554 1.19123 0.99109 0.87647 1.31656 0.91577 1.24937 0.98880 0.98825 0.96863 1.69932 1.23857 1.29565 1.31374 0.86348 0.78284 0.84232 0.77778 1.21149 1.21680 1.20992 1.20966 0.98749 0.94814 0.97471 1.20916 1.00530 0.94752 0.97332 0.92584 0.92581 0.92617 0.91216 0.91230 0.86430 0.86335 0.88174 0.88079 0.90519 0.91904 0.92736 0.93492 0.89675 0.95013 0.93807 0.92756 0.91987 0.89488 0.93506 0.86292 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.90 37.16 0.37 -0.72 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.09 -1.01 5.13 -104.63 -0.54 -1.55 16 4 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 5 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 6 C -0.06 -0.82 4.37 -104.63 -0.46 -1.28 16 7 C -0.11 -1.48 4.14 -29.04 -0.12 -1.60 16 8 C 0.51 9.04 5.01 -10.98 -0.06 8.99 16 9 O -0.55 -11.30 15.43 5.57 0.09 -11.21 16 10 N -0.59 -10.87 1.65 -172.22 -0.28 -11.15 16 11 C 0.10 1.97 5.89 -3.49 -0.02 1.95 16 12 C 0.15 3.09 3.61 -66.85 -0.24 2.85 16 13 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 14 C -0.12 -2.24 5.58 -26.54 -0.15 -2.39 16 15 C -0.14 -2.49 5.55 -26.72 -0.15 -2.64 16 16 C -0.13 -2.46 5.59 -26.54 -0.15 -2.61 16 17 C 0.18 3.74 2.63 -66.83 -0.18 3.56 16 18 H 0.12 2.75 5.93 -51.93 -0.31 2.44 16 19 C 0.10 1.87 5.75 -3.47 -0.02 1.85 16 20 N -0.58 -13.22 2.54 -155.41 -0.39 -13.61 16 21 C -0.25 -6.26 9.73 -15.06 -0.15 -6.41 16 22 H 0.07 1.68 7.90 -52.48 -0.41 1.27 16 23 C 0.00 0.08 4.98 -17.43 -0.09 0.00 16 24 N -0.90 -23.48 10.73 55.49 0.60 -22.89 16 25 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 30 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.10 1.25 7.87 -51.92 -0.41 0.84 16 39 H 0.10 1.30 7.62 -51.93 -0.40 0.90 16 40 H 0.08 1.47 6.99 -51.93 -0.36 1.11 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.54 2.49 -52.44 -0.13 1.41 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.06 0.99 5.90 -51.92 -0.31 0.68 16 49 H 0.09 1.88 7.75 -51.93 -0.40 1.48 16 50 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 51 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 52 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -28.44 394.44 -11.34 -39.78 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.62 Total: 5.47 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.64 Total: -7.91 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.08 Total: -47.65 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.44 -11.34 -39.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039934872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.933 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds