Wall clock time and date at job start Sat Apr 11 2020 06:44:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50696 * 109.47175 * 2 1
4 4 C 1.38234 * 120.00045 * 90.00065 * 3 2 1
5 5 C 1.38237 * 120.00290 * 180.02562 * 4 3 2
6 6 C 1.38240 * 119.99721 * 359.94747 * 5 4 3
7 7 C 1.50695 * 120.00026 * 180.02562 * 6 5 4
8 8 C 1.50698 * 109.47112 * 90.00241 * 7 6 5
9 9 O 1.21271 * 120.00107 * 359.97438 * 8 7 6
10 10 N 1.34780 * 119.99605 * 180.02562 * 8 7 6
11 11 C 1.46951 * 120.43847 * 179.97438 * 10 8 7
12 12 C 1.53593 * 108.52798 * 125.72437 * 11 10 8
13 13 H 1.08998 * 110.59777 * 172.77123 * 12 11 10
14 14 C 1.53369 * 108.68595 * 294.36273 * 12 11 10
15 15 C 1.53007 * 109.27201 * 60.30010 * 14 12 11
16 16 C 1.53007 * 109.80054 * 60.56533 * 15 14 12
17 17 C 1.53370 * 109.25252 * 299.42421 * 16 15 14
18 18 H 1.08998 * 110.59526 * 178.14430 * 17 16 15
19 19 C 1.46941 * 120.44855 * 359.97438 * 10 8 7
20 20 N 1.47566 * 107.98751 * 56.37731 * 17 16 15
21 21 C 1.36936 * 121.60911 * 122.25605 * 20 17 16
22 22 H 1.08006 * 119.99698 * 206.85727 * 21 20 17
23 23 C 1.38809 * 120.00342 * 26.85503 * 21 20 17
24 24 N 1.31619 * 119.99678 * 18.53643 * 23 21 20
25 25 Si 1.86805 * 120.00262 * 198.53564 * 23 21 20
26 26 H 1.48492 * 109.46901 * 60.00133 * 25 23 21
27 27 H 1.48498 * 109.47028 * 180.02562 * 25 23 21
28 28 H 1.48500 * 109.47100 * 300.00042 * 25 23 21
29 29 C 1.38231 * 119.99730 * 0.28073 * 6 5 4
30 30 C 1.38235 * 119.99864 * 269.97452 * 3 2 1
31 31 H 1.08992 * 109.47352 * 300.00571 * 1 2 3
32 32 H 1.09000 * 109.46831 * 60.00471 * 1 2 3
33 33 H 1.09002 * 109.46957 * 179.97438 * 1 2 3
34 34 H 1.09003 * 109.46949 * 239.99671 * 2 1 3
35 35 H 1.08999 * 109.46624 * 120.00032 * 2 1 3
36 36 H 1.08003 * 120.00237 * 359.96828 * 4 3 2
37 37 H 1.07993 * 120.00047 * 179.97438 * 5 4 3
38 38 H 1.09008 * 109.47078 * 329.99847 * 7 6 5
39 39 H 1.09002 * 109.47190 * 210.00181 * 7 6 5
40 40 H 1.09001 * 109.62855 * 6.01378 * 11 10 8
41 41 H 1.09001 * 109.78526 * 245.53275 * 11 10 8
42 42 H 1.09006 * 109.50216 * 180.23662 * 14 12 11
43 43 H 1.08994 * 109.50468 * 300.35414 * 14 12 11
44 44 H 1.09004 * 109.41161 * 300.46412 * 15 14 12
45 45 H 1.09001 * 109.36151 * 180.63776 * 15 14 12
46 46 H 1.08994 * 109.51032 * 179.48505 * 16 15 14
47 47 H 1.09001 * 109.53907 * 59.37277 * 16 15 14
48 48 H 1.09010 * 109.62041 * 353.98033 * 19 10 8
49 49 H 1.09000 * 109.62481 * 114.54117 * 19 10 8
50 50 H 0.97007 * 120.00025 * 179.97438 * 24 23 21
51 51 H 1.08003 * 120.00005 * 179.72633 * 29 6 5
52 52 H 1.07993 * 120.00334 * 0.02562 * 30 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.2628 2.0724 1.1971
5 6 2.7231 3.3759 1.1972
6 6 2.9540 4.0274 0.0000
7 6 3.4563 5.4481 0.0000
8 6 4.9633 5.4481 0.0006
9 8 5.5697 4.3979 0.0014
10 7 5.6371 6.6154 0.0012
11 6 7.1066 6.6267 0.0023
12 6 7.5890 7.4809 -1.1795
13 1 8.6695 7.6179 -1.1378
14 6 7.1833 6.7866 -2.4855
15 6 5.6599 6.6522 -2.5338
16 6 5.0154 8.0391 -2.4875
17 6 5.4125 8.7379 -1.1813
18 1 4.9911 9.7423 -1.1404
19 6 4.9123 7.8936 0.0007
20 7 6.8862 8.7768 -1.1150
21 6 7.5685 9.9584 -0.9993
22 1 8.5783 10.0378 -1.3741
23 6 6.9623 11.0542 -0.4003
24 7 5.9086 10.8839 0.3697
25 14 7.6422 12.7703 -0.6870
26 1 7.5977 13.0843 -2.1377
27 1 6.8226 13.7585 0.0592
28 1 9.0471 12.8322 -0.2099
29 6 2.7191 3.3773 -1.1971
30 6 2.2632 2.0722 -1.1972
31 1 -0.3633 0.5139 0.8898
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8933 -0.5139 -0.8900
35 1 1.8933 -0.5138 0.8900
36 1 2.0823 1.5635 2.1325
37 1 2.9027 3.8851 2.1325
38 1 3.0926 5.9622 0.8898
39 1 3.0933 5.9619 -0.8902
40 1 7.4807 5.6086 -0.1050
41 1 7.4715 7.0543 0.9362
42 1 7.5233 7.3803 -3.3341
43 1 7.6376 5.7968 -2.5278
44 1 5.3206 6.0662 -1.6795
45 1 5.3706 6.1487 -3.4563
46 1 3.9310 7.9383 -2.5314
47 1 5.3607 8.6300 -3.3359
48 1 3.8436 7.7083 -0.1078
49 1 5.1020 8.4223 0.9348
50 1 5.4851 11.6496 0.7886
51 1 2.8953 3.8877 -2.1324
52 1 2.0833 1.5632 -2.1324
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001039934872.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:51
Heat of formation + Delta-G solvation = 15.254628 kcal
Electronic energy + Delta-G solvation = -31346.558571 eV
Core-core repulsion = 27504.255243 eV
Total energy + Delta-G solvation = -3842.303327 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-42.13673 -40.37879 -39.07006 -35.53546 -35.49661 -34.61642 -33.60816 -32.10325
-31.97741 -31.76852 -28.99438 -27.82744 -26.91159 -25.35035 -24.12863 -23.60751
-23.15932 -22.77465 -21.58229 -20.63250 -19.94888 -18.60843 -17.74689 -17.21658
-16.79794 -16.73756 -16.38101 -16.16266 -15.88380 -15.67171 -15.22010 -14.89460
-14.65942 -14.55029 -14.48407 -14.43636 -14.14705 -14.09657 -13.85506 -13.69770
-13.49667 -13.13277 -12.95473 -12.85796 -12.79842 -12.65703 -12.50029 -12.38081
-12.13784 -12.03160 -11.86814 -11.69797 -11.69161 -11.63973 -11.61425 -11.15822
-11.11716 -10.74968 -10.52151 -9.75362 -9.37672 -9.36757 -8.43419 -7.83485
-5.23815 0.43882 0.57148 1.49688 1.52353 1.57607 1.67031 2.13503
2.54509 2.90117 3.30899 3.51637 3.70240 3.80784 3.91221 3.99836
4.12807 4.17766 4.18480 4.20598 4.24878 4.28930 4.43303 4.47892
4.51189 4.55265 4.60255 4.63544 4.68527 4.77032 4.77222 4.79647
4.83747 4.89579 5.00925 5.05816 5.08997 5.11655 5.15299 5.20429
5.23663 5.26847 5.32876 5.41913 5.49245 5.52059 5.56467 5.63249
5.69334 5.73773 5.77253 5.88511 6.17687 6.41386 6.59071 7.18772
7.23990 7.85091 8.44100 9.21725
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.025872 B = 0.002656 C = 0.002595
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1081.980583 B =10541.545010 C =10785.537677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.083 4.083
3 C -0.091 4.091
4 C -0.126 4.126
5 C -0.118 4.118
6 C -0.079 4.079
7 C -0.099 4.099
8 C 0.517 3.483
9 O -0.580 6.580
10 N -0.591 5.591
11 C 0.109 3.891
12 C 0.149 3.851
13 H 0.071 0.929
14 C -0.115 4.115
15 C -0.136 4.136
16 C -0.124 4.124
17 C 0.173 3.827
18 H 0.086 0.914
19 C 0.113 3.887
20 N -0.593 5.593
21 C -0.258 4.258
22 H 0.058 0.942
23 C -0.037 4.037
24 N -0.917 5.917
25 Si 0.958 3.042
26 H -0.285 1.285
27 H -0.294 1.294
28 H -0.284 1.284
29 C -0.116 4.116
30 C -0.126 4.126
31 H 0.052 0.948
32 H 0.052 0.948
33 H 0.070 0.930
34 H 0.077 0.923
35 H 0.077 0.923
36 H 0.136 0.864
37 H 0.123 0.877
38 H 0.116 0.884
39 H 0.118 0.882
40 H 0.080 0.920
41 H 0.044 0.956
42 H 0.048 0.952
43 H 0.058 0.942
44 H 0.087 0.913
45 H 0.048 0.952
46 H 0.072 0.928
47 H 0.040 0.960
48 H 0.096 0.904
49 H 0.055 0.945
50 H 0.251 0.749
51 H 0.125 0.875
52 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.445 -16.427 -1.572 20.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.120 4.120
3 C -0.091 4.091
4 C -0.144 4.144
5 C -0.136 4.136
6 C -0.079 4.079
7 C -0.139 4.139
8 C 0.308 3.692
9 O -0.461 6.461
10 N -0.324 5.324
11 C -0.016 4.016
12 C 0.042 3.958
13 H 0.090 0.910
14 C -0.154 4.154
15 C -0.174 4.174
16 C -0.163 4.163
17 C 0.066 3.934
18 H 0.104 0.896
19 C -0.011 4.011
20 N -0.315 5.315
21 C -0.388 4.388
22 H 0.076 0.924
23 C -0.234 4.234
24 N -0.562 5.562
25 Si 0.787 3.213
26 H -0.212 1.212
27 H -0.220 1.220
28 H -0.210 1.210
29 C -0.134 4.134
30 C -0.143 4.143
31 H 0.071 0.929
32 H 0.072 0.928
33 H 0.089 0.911
34 H 0.096 0.904
35 H 0.095 0.905
36 H 0.154 0.846
37 H 0.141 0.859
38 H 0.134 0.866
39 H 0.136 0.864
40 H 0.098 0.902
41 H 0.063 0.937
42 H 0.067 0.933
43 H 0.077 0.923
44 H 0.104 0.896
45 H 0.067 0.933
46 H 0.090 0.910
47 H 0.059 0.941
48 H 0.114 0.886
49 H 0.074 0.926
50 H 0.060 0.940
51 H 0.143 0.857
52 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -11.190 -16.804 -1.465 20.242
hybrid contribution 0.874 1.591 0.081 1.817
sum -10.316 -15.213 -1.383 18.433
Atomic orbital electron populations
1.21723 0.93945 1.02398 1.01947 1.20576 0.96734 0.91282 1.03443
1.20186 0.98754 0.97256 0.92940 1.21199 1.00192 0.94514 0.98495
1.21168 0.99283 0.95624 0.97562 1.19403 0.99520 0.94929 0.94086
1.20788 0.90443 0.95954 1.06686 1.20704 0.90837 0.82566 0.75048
1.90656 1.71084 1.31916 1.52407 1.48252 1.06803 1.06424 1.70888
1.21975 0.80402 1.00271 0.98962 1.21317 0.95901 0.85890 0.92734
0.91037 1.21819 0.96983 0.98940 0.97662 1.22078 0.95486 0.97624
1.02188 1.22019 0.99564 0.96188 0.98527 1.21067 0.83600 0.97916
0.90797 0.89637 1.22233 0.95566 0.82589 1.00698 1.44513 1.01650
1.00486 1.84811 1.19294 0.99133 0.89061 1.31318 0.92403 1.25487
0.99552 1.01241 0.97121 1.70050 1.24558 1.29723 1.31916 0.85500
0.77489 0.80996 0.77283 1.21176 1.21981 1.21028 1.21168 0.99109
0.95547 0.97544 1.21210 1.00143 0.94517 0.98477 0.92876 0.92847
0.91081 0.90433 0.90479 0.84640 0.85885 0.86587 0.86417 0.90183
0.93724 0.93338 0.92334 0.89568 0.93316 0.90978 0.94094 0.88559
0.92628 0.93987 0.85705 0.84574
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.76 9.90 71.98 0.71 -1.05 16
2 C -0.08 -1.22 6.06 29.85 0.18 -1.04 16
3 C -0.09 -1.88 5.13 -19.87 -0.10 -1.98 16
4 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16
5 C -0.12 -2.94 9.70 22.27 0.22 -2.73 16
6 C -0.08 -2.07 4.37 -19.87 -0.09 -2.15 16
7 C -0.10 -2.57 4.14 29.10 0.12 -2.45 16
8 C 0.52 17.44 5.01 87.66 0.44 17.88 16
9 O -0.58 -23.07 15.43 -3.00 -0.05 -23.11 16
10 N -0.59 -21.32 1.65 -817.17 -1.35 -22.66 16
11 C 0.11 4.24 5.89 86.49 0.51 4.75 16
12 C 0.15 6.03 3.61 45.11 0.16 6.19 16
13 H 0.07 2.91 8.03 -2.39 -0.02 2.89 16
14 C -0.11 -4.14 5.58 30.72 0.17 -3.97 16
15 C -0.14 -4.58 5.55 30.60 0.17 -4.41 16
16 C -0.12 -4.37 5.59 30.72 0.17 -4.20 16
17 C 0.17 7.24 2.63 45.12 0.12 7.36 16
18 H 0.09 4.13 5.93 -2.39 -0.01 4.12 16
19 C 0.11 4.18 5.75 86.51 0.50 4.68 16
20 N -0.59 -27.41 2.54 -645.61 -1.64 -29.05 16
21 C -0.26 -13.38 9.73 84.03 0.82 -12.56 16
22 H 0.06 3.02 7.90 -2.91 -0.02 3.00 16
23 C -0.04 -1.94 4.98 84.86 0.42 -1.52 16
24 N -0.92 -48.58 10.73 21.65 0.23 -48.35 16
25 Si 0.96 42.99 29.59 68.60 2.03 45.02 16
26 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16
27 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16
28 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16
29 C -0.12 -2.85 9.70 22.27 0.22 -2.63 16
30 C -0.13 -2.73 9.70 22.27 0.22 -2.51 16
31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
34 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16
35 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16
36 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16
37 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16
38 H 0.12 2.62 7.87 -2.38 -0.02 2.60 16
39 H 0.12 2.64 7.62 -2.39 -0.02 2.62 16
40 H 0.08 3.06 6.99 -2.39 -0.02 3.04 16
41 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16
42 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16
43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
44 H 0.09 2.93 2.49 -3.41 -0.01 2.92 16
45 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16
47 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
48 H 0.10 2.86 5.90 -2.38 -0.01 2.85 16
49 H 0.06 2.43 7.75 -2.39 -0.02 2.41 16
50 H 0.25 13.05 8.31 -92.70 -0.77 12.28 16
51 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16
52 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16
Total: -1.00 -61.18 394.44 5.29 -55.88
By element:
Atomic # 1 Polarization: 26.26 SS G_CDS: 0.89 Total: 27.16 kcal
Atomic # 6 Polarization: -10.06 SS G_CDS: 5.17 Total: -4.89 kcal
Atomic # 7 Polarization: -97.30 SS G_CDS: -2.75 Total: -100.06 kcal
Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.11 kcal
Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal
Total: -61.18 5.29 -55.88 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001039934872.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.137 kcal
(2) G-P(sol) polarization free energy of solvation -61.176 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.293 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.883 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.255 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds