Wall clock time and date at job start Sat Apr 11 2020 06:46:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52995 * 109.47135 * 2 1
4 4 C 1.53002 * 109.47150 * 180.02562 * 3 2 1
5 5 H 1.09001 * 109.46787 * 304.99874 * 4 3 2
6 6 N 1.46501 * 109.47301 * 64.99546 * 4 3 2
7 7 C 1.34781 * 119.99523 * 60.00410 * 6 4 3
8 8 N 1.34781 * 119.99591 * 180.02562 * 7 6 4
9 9 O 1.21581 * 120.00074 * 359.97438 * 7 6 4
10 10 C 1.50700 * 109.46962 * 184.99911 * 4 3 2
11 11 O 1.21285 * 119.99656 * 259.99424 * 10 4 3
12 12 N 1.34779 * 119.99845 * 80.00066 * 10 4 3
13 13 C 1.46500 * 119.99684 * 179.97438 * 12 10 4
14 14 C 1.52998 * 109.47129 * 179.97438 * 13 12 10
15 15 H 1.08995 * 109.40647 * 305.00922 * 14 13 12
16 16 C 1.54294 * 109.40725 * 185.15988 * 14 13 12
17 17 N 1.48171 * 110.69400 * 200.49496 * 16 14 13
18 18 C 1.36938 * 118.51605 * 138.77835 * 17 16 14
19 19 H 1.07994 * 120.00255 * 206.12427 * 18 17 16
20 20 C 1.38817 * 119.99683 * 26.11778 * 18 17 16
21 21 N 1.31614 * 120.00119 * 15.51415 * 20 18 17
22 22 Si 1.86800 * 119.99949 * 195.51304 * 20 18 17
23 23 H 1.48498 * 109.47232 * 90.00021 * 22 20 18
24 24 H 1.48498 * 109.46924 * 210.00113 * 22 20 18
25 25 H 1.48507 * 109.47118 * 330.00130 * 22 20 18
26 26 C 1.44463 * 122.97613 * 318.79681 * 17 16 14
27 27 C 1.54878 * 109.32911 * 88.91328 * 26 17 16
28 28 C 1.47689 * 109.67807 * 290.10450 * 27 26 17
29 29 O 1.40530 * 109.40089 * 64.84062 * 14 13 12
30 30 H 1.09004 * 109.47183 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46779 * 299.99523 * 1 2 3
32 32 H 1.08996 * 109.47608 * 59.99734 * 1 2 3
33 33 H 1.09005 * 109.46464 * 240.00070 * 2 1 3
34 34 H 1.08998 * 109.47314 * 120.00714 * 2 1 3
35 35 H 1.08993 * 109.47655 * 60.00303 * 3 2 1
36 36 H 1.09007 * 109.46930 * 300.00132 * 3 2 1
37 37 H 0.96992 * 120.00063 * 239.99890 * 6 4 3
38 38 H 0.96992 * 119.99995 * 359.97438 * 8 7 6
39 39 H 0.96998 * 119.99784 * 180.02562 * 8 7 6
40 40 H 0.96992 * 120.00088 * 359.97438 * 12 10 4
41 41 H 1.09004 * 109.47333 * 299.99856 * 13 12 10
42 42 H 1.09000 * 109.47320 * 59.99731 * 13 12 10
43 43 H 1.08999 * 109.23233 * 320.81022 * 16 14 13
44 44 H 1.09002 * 109.22476 * 80.22515 * 16 14 13
45 45 H 0.96995 * 120.00237 * 179.97438 * 21 20 18
46 46 H 1.08996 * 109.49859 * 208.87182 * 26 17 16
47 47 H 1.09003 * 109.49252 * 328.95869 * 26 17 16
48 48 H 1.08998 * 109.43206 * 50.16435 * 27 26 17
49 49 H 1.09000 * 109.43787 * 170.08251 * 27 26 17
50 50 H 1.08997 * 108.64009 * 181.87910 * 28 27 26
51 51 H 1.08995 * 108.64595 * 299.72008 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5700 1.4425 -0.0006
5 1 3.9337 0.8529 0.8410
6 7 4.0579 0.8588 -1.2527
7 6 3.7318 1.4244 -2.4318
8 7 4.1802 0.8872 -3.5837
9 8 3.0325 2.4187 -2.4564
10 6 4.0724 2.8579 0.1232
11 8 4.4461 3.4571 -0.8629
12 7 4.1064 3.4577 1.3296
13 6 4.5953 4.8335 1.4500
14 6 4.5290 5.2720 2.9143
15 1 3.5139 5.1365 3.2874
16 6 4.9205 6.7605 3.0220
17 7 5.3425 7.0924 4.4030
18 6 6.4257 7.9120 4.5765
19 1 7.0123 7.8475 5.4809
20 6 6.7698 8.8256 3.5896
21 7 5.9079 9.1260 2.6415
22 14 8.4563 9.6287 3.6074
23 1 9.4074 8.8002 2.8238
24 1 8.3661 10.9827 3.0043
25 1 8.9360 9.7417 5.0083
26 6 4.6632 6.5901 5.5749
27 6 5.2852 5.2325 5.9855
28 6 4.9339 4.2023 4.9873
29 8 5.4145 4.4906 3.6761
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8901
32 1 -0.3634 0.5138 -0.8899
33 1 1.8932 -0.5139 -0.8901
34 1 1.8934 -0.5139 0.8899
35 1 1.6768 1.9563 0.8899
36 1 1.6766 1.9563 -0.8900
37 1 4.6155 0.0655 -1.2331
38 1 4.7378 0.0938 -3.5641
39 1 3.9459 1.2945 -4.4323
40 1 3.8072 2.9786 2.1181
41 1 5.6268 4.8844 1.1015
42 1 3.9743 5.4940 0.8449
43 1 5.7424 6.9661 2.3362
44 1 4.0638 7.3775 2.7509
45 1 6.1482 9.7646 1.9521
46 1 4.7731 7.3026 6.3924
47 1 3.6053 6.4528 5.3512
48 1 6.3694 5.3315 6.0384
49 1 4.8998 4.9373 6.9615
50 1 5.3511 3.2483 5.3095
51 1 3.8485 4.1097 4.9492
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001150652663.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:43
Heat of formation + Delta-G solvation = -89.072815 kcal
Electronic energy + Delta-G solvation = -31676.799150 eV
Core-core repulsion = 27419.122582 eV
Total energy + Delta-G solvation = -4257.676568 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.210 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.59442 -39.13501 -38.38647 -36.00443 -35.09910 -34.50336 -33.92971 -33.06045
-32.52327 -31.08837 -29.49521 -28.39480 -25.79698 -25.32441 -24.36999 -22.58057
-21.99812 -20.99608 -20.88362 -19.99310 -19.47163 -18.67893 -17.63537 -16.95889
-16.64043 -16.22775 -15.92197 -15.50322 -15.26305 -14.89726 -14.75784 -14.53102
-14.21568 -14.16464 -13.95689 -13.63371 -13.53583 -13.19240 -12.88337 -12.64788
-12.45340 -12.31632 -12.19606 -12.05011 -11.77601 -11.45524 -11.30726 -11.11677
-10.97367 -10.83173 -10.70276 -10.57066 -10.20314 -10.16966 -9.98585 -9.85370
-9.80264 -9.64542 -9.61468 -8.99560 -8.74745 -8.70923 -8.37056 -6.66770
-5.74419 -3.17628 2.62719 2.96004 3.24773 3.42300 3.49380 3.49885
3.53606 4.31317 4.35443 4.53951 4.60923 4.71702 4.78115 4.90931
5.04901 5.19201 5.31886 5.41901 5.44560 5.48139 5.58105 5.59016
5.64546 5.66592 5.80127 5.87991 5.92071 5.97412 6.07692 6.14891
6.17571 6.26524 6.31914 6.38219 6.40598 6.51909 6.57905 6.75158
6.78499 6.86648 6.98982 7.21830 7.62126 7.74864 7.85031 7.89233
7.99951 8.49334 8.50182 8.72350 9.25132 9.91875 10.35906 11.33418
Molecular weight = 342.21amu
Principal moments of inertia in cm(-1)
A = 0.014301 B = 0.002765 C = 0.002457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1957.414101 B =10122.330700 C =11391.426081
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.116 4.116
3 C -0.136 4.136
4 C 0.155 3.845
5 H 0.107 0.893
6 N -0.733 5.733
7 C 0.710 3.290
8 N -0.872 5.872
9 O -0.561 6.561
10 C 0.494 3.506
11 O -0.507 6.507
12 N -0.724 5.724
13 C 0.128 3.872
14 C 0.057 3.943
15 H 0.047 0.953
16 C 0.166 3.834
17 N -0.586 5.586
18 C -0.255 4.255
19 H 0.065 0.935
20 C 0.005 3.995
21 N -0.905 5.905
22 Si 0.902 3.098
23 H -0.287 1.287
24 H -0.292 1.292
25 H -0.280 1.280
26 C 0.157 3.843
27 C -0.184 4.184
28 C 0.079 3.921
29 O -0.360 6.360
30 H 0.052 0.948
31 H 0.055 0.945
32 H 0.054 0.946
33 H 0.060 0.940
34 H 0.060 0.940
35 H 0.074 0.926
36 H 0.096 0.904
37 H 0.397 0.603
38 H 0.392 0.608
39 H 0.413 0.587
40 H 0.395 0.605
41 H 0.074 0.926
42 H 0.079 0.921
43 H 0.083 0.917
44 H 0.037 0.963
45 H 0.254 0.746
46 H 0.050 0.950
47 H 0.028 0.972
48 H 0.070 0.930
49 H 0.057 0.943
50 H 0.065 0.935
51 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.869 -23.328 -4.382 25.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.154 4.154
3 C -0.174 4.174
4 C 0.045 3.955
5 H 0.125 0.875
6 N -0.390 5.390
7 C 0.408 3.592
8 N -0.441 5.441
9 O -0.436 6.436
10 C 0.277 3.723
11 O -0.380 6.380
12 N -0.377 5.377
13 C 0.004 3.996
14 C -0.003 4.003
15 H 0.065 0.935
16 C 0.040 3.960
17 N -0.307 5.307
18 C -0.385 4.385
19 H 0.082 0.918
20 C -0.194 4.194
21 N -0.550 5.550
22 Si 0.732 3.268
23 H -0.214 1.214
24 H -0.218 1.218
25 H -0.205 1.205
26 C 0.029 3.971
27 C -0.224 4.224
28 C 0.002 3.998
29 O -0.278 6.278
30 H 0.071 0.929
31 H 0.074 0.926
32 H 0.073 0.927
33 H 0.079 0.921
34 H 0.079 0.921
35 H 0.093 0.907
36 H 0.114 0.886
37 H 0.231 0.769
38 H 0.219 0.781
39 H 0.245 0.755
40 H 0.228 0.772
41 H 0.093 0.907
42 H 0.097 0.903
43 H 0.102 0.898
44 H 0.054 0.946
45 H 0.064 0.936
46 H 0.068 0.932
47 H 0.046 0.954
48 H 0.088 0.912
49 H 0.076 0.924
50 H 0.084 0.916
51 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -8.038 -21.920 -5.182 23.915
hybrid contribution 1.135 -0.303 0.220 1.195
sum -6.904 -22.222 -4.962 23.793
Atomic orbital electron populations
1.21753 0.95694 1.01408 1.02091 1.21454 0.96035 0.96158 1.01736
1.22037 0.92331 0.98102 1.04978 1.20704 0.95754 0.92579 0.86456
0.87531 1.44668 1.57396 1.32653 1.04239 1.15838 0.80447 0.82360
0.80506 1.42971 1.58863 1.34465 1.07788 1.90976 1.41643 1.25171
1.85776 1.20810 0.79248 0.88803 0.83443 1.90774 1.45753 1.65171
1.36346 1.45955 1.66668 1.16095 1.08952 1.21520 1.00643 0.81445
0.95983 1.23164 0.92216 0.95448 0.89517 0.93517 1.21623 1.00296
0.86788 0.87285 1.43581 1.33548 1.54275 0.99256 1.19177 1.03439
1.11540 1.04340 0.91774 1.25009 0.98145 0.97187 0.99050 1.70021
1.33030 1.35495 1.16408 0.86298 0.84487 0.78384 0.77616 1.21432
1.21804 1.20542 1.20666 0.93372 0.92462 0.90621 1.22303 1.03283
0.99482 0.97360 1.21293 0.96910 0.97274 0.84327 1.87450 1.45689
1.70682 1.23978 0.92883 0.92608 0.92677 0.92089 0.92125 0.90709
0.88576 0.76897 0.78126 0.75550 0.77171 0.90745 0.90311 0.89847
0.94552 0.93574 0.93168 0.95372 0.91162 0.92420 0.91649 0.94778
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16
2 C -0.12 -0.86 5.82 -26.73 -0.16 -1.01 16
3 C -0.14 -1.35 4.54 -26.73 -0.12 -1.47 16
4 C 0.16 1.59 3.01 -69.08 -0.21 1.38 16
5 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16
6 N -0.73 -6.92 4.66 -59.81 -0.28 -7.20 16
7 C 0.71 8.86 7.59 -86.91 -0.66 8.20 16
8 N -0.87 -7.00 8.88 27.64 0.25 -6.75 16
9 O -0.56 -9.92 13.03 -18.19 -0.24 -10.16 16
10 C 0.49 7.50 6.82 -10.98 -0.07 7.43 16
11 O -0.51 -10.23 13.68 -17.93 -0.25 -10.48 16
12 N -0.72 -10.35 5.49 -60.29 -0.33 -10.69 16
13 C 0.13 2.28 5.24 -4.04 -0.02 2.26 16
14 C 0.06 1.06 2.35 -26.05 -0.06 0.99 16
15 H 0.05 0.79 7.20 -51.93 -0.37 0.42 16
16 C 0.17 3.95 4.50 -2.45 -0.01 3.94 16
17 N -0.59 -14.53 2.59 -171.49 -0.44 -14.97 16
18 C -0.26 -7.03 9.43 -15.06 -0.14 -7.17 16
19 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16
20 C 0.00 0.13 4.88 -17.43 -0.09 0.04 16
21 N -0.91 -26.44 10.98 55.49 0.61 -25.83 16
22 Si 0.90 22.26 29.58 -169.99 -5.03 17.23 16
23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
26 C 0.16 3.21 5.68 -4.14 -0.02 3.19 16
27 C -0.18 -3.15 6.03 -28.31 -0.17 -3.32 16
28 C 0.08 1.23 6.04 34.59 0.21 1.44 16
29 O -0.36 -6.75 9.77 -34.10 -0.33 -7.08 16
30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
33 H 0.06 0.46 7.75 -51.93 -0.40 0.05 16
34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.10 1.30 6.04 -51.93 -0.31 0.99 16
37 H 0.40 2.28 8.84 -40.82 -0.36 1.92 16
38 H 0.39 1.73 8.84 -40.82 -0.36 1.36 16
39 H 0.41 3.12 8.93 -40.82 -0.36 2.75 16
40 H 0.40 4.52 8.46 -40.82 -0.35 4.17 16
41 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16
42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16
43 H 0.08 2.26 6.24 -51.93 -0.32 1.94 16
44 H 0.04 0.93 8.02 -51.93 -0.42 0.51 16
45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16
46 H 0.05 1.04 7.97 -51.93 -0.41 0.63 16
47 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16
48 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16
49 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
50 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16
51 H 0.03 0.47 7.27 -51.93 -0.38 0.09 16
LS Contribution 401.24 15.07 6.05 6.05
Total: -1.00 -37.28 401.24 -9.83 -47.11
By element:
Atomic # 1 Polarization: 16.29 SS G_CDS: -8.67 Total: 7.61 kcal
Atomic # 6 Polarization: 16.32 SS G_CDS: -1.16 Total: 15.16 kcal
Atomic # 7 Polarization: -65.25 SS G_CDS: -0.20 Total: -65.44 kcal
Atomic # 8 Polarization: -26.90 SS G_CDS: -0.82 Total: -27.71 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -37.28 -9.83 -47.11 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001150652663.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.967 kcal
(2) G-P(sol) polarization free energy of solvation -37.280 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.106 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.073 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds