Wall clock time and date at job start Sat Apr 11 2020 06:46:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52995 * 109.47135 * 2 1
4 4 C 1.53002 * 109.47150 * 180.02562 * 3 2 1
5 5 H 1.09001 * 109.46787 * 304.99874 * 4 3 2
6 6 N 1.46501 * 109.47301 * 64.99546 * 4 3 2
7 7 C 1.34781 * 119.99523 * 60.00410 * 6 4 3
8 8 N 1.34781 * 119.99591 * 180.02562 * 7 6 4
9 9 O 1.21581 * 120.00074 * 359.97438 * 7 6 4
10 10 C 1.50700 * 109.46962 * 184.99911 * 4 3 2
11 11 O 1.21285 * 119.99656 * 259.99424 * 10 4 3
12 12 N 1.34779 * 119.99845 * 80.00066 * 10 4 3
13 13 C 1.46500 * 119.99684 * 179.97438 * 12 10 4
14 14 C 1.52998 * 109.47129 * 179.97438 * 13 12 10
15 15 H 1.08995 * 109.40647 * 305.00922 * 14 13 12
16 16 C 1.54294 * 109.40725 * 185.15988 * 14 13 12
17 17 N 1.48171 * 110.69400 * 200.49496 * 16 14 13
18 18 C 1.36938 * 118.51605 * 138.77835 * 17 16 14
19 19 H 1.07994 * 120.00255 * 206.12427 * 18 17 16
20 20 C 1.38817 * 119.99683 * 26.11778 * 18 17 16
21 21 N 1.31614 * 120.00119 * 15.51415 * 20 18 17
22 22 Si 1.86800 * 119.99949 * 195.51304 * 20 18 17
23 23 H 1.48498 * 109.47232 * 90.00021 * 22 20 18
24 24 H 1.48498 * 109.46924 * 210.00113 * 22 20 18
25 25 H 1.48507 * 109.47118 * 330.00130 * 22 20 18
26 26 C 1.44463 * 122.97613 * 318.79681 * 17 16 14
27 27 C 1.54878 * 109.32911 * 88.91328 * 26 17 16
28 28 C 1.47689 * 109.67807 * 290.10450 * 27 26 17
29 29 O 1.40530 * 109.40089 * 64.84062 * 14 13 12
30 30 H 1.09004 * 109.47183 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46779 * 299.99523 * 1 2 3
32 32 H 1.08996 * 109.47608 * 59.99734 * 1 2 3
33 33 H 1.09005 * 109.46464 * 240.00070 * 2 1 3
34 34 H 1.08998 * 109.47314 * 120.00714 * 2 1 3
35 35 H 1.08993 * 109.47655 * 60.00303 * 3 2 1
36 36 H 1.09007 * 109.46930 * 300.00132 * 3 2 1
37 37 H 0.96992 * 120.00063 * 239.99890 * 6 4 3
38 38 H 0.96992 * 119.99995 * 359.97438 * 8 7 6
39 39 H 0.96998 * 119.99784 * 180.02562 * 8 7 6
40 40 H 0.96992 * 120.00088 * 359.97438 * 12 10 4
41 41 H 1.09004 * 109.47333 * 299.99856 * 13 12 10
42 42 H 1.09000 * 109.47320 * 59.99731 * 13 12 10
43 43 H 1.08999 * 109.23233 * 320.81022 * 16 14 13
44 44 H 1.09002 * 109.22476 * 80.22515 * 16 14 13
45 45 H 0.96995 * 120.00237 * 179.97438 * 21 20 18
46 46 H 1.08996 * 109.49859 * 208.87182 * 26 17 16
47 47 H 1.09003 * 109.49252 * 328.95869 * 26 17 16
48 48 H 1.08998 * 109.43206 * 50.16435 * 27 26 17
49 49 H 1.09000 * 109.43787 * 170.08251 * 27 26 17
50 50 H 1.08997 * 108.64009 * 181.87910 * 28 27 26
51 51 H 1.08995 * 108.64595 * 299.72008 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5700 1.4425 -0.0006
5 1 3.9337 0.8529 0.8410
6 7 4.0579 0.8588 -1.2527
7 6 3.7318 1.4244 -2.4318
8 7 4.1802 0.8872 -3.5837
9 8 3.0325 2.4187 -2.4564
10 6 4.0724 2.8579 0.1232
11 8 4.4461 3.4571 -0.8629
12 7 4.1064 3.4577 1.3296
13 6 4.5953 4.8335 1.4500
14 6 4.5290 5.2720 2.9143
15 1 3.5139 5.1365 3.2874
16 6 4.9205 6.7605 3.0220
17 7 5.3425 7.0924 4.4030
18 6 6.4257 7.9120 4.5765
19 1 7.0123 7.8475 5.4809
20 6 6.7698 8.8256 3.5896
21 7 5.9079 9.1260 2.6415
22 14 8.4563 9.6287 3.6074
23 1 9.4074 8.8002 2.8238
24 1 8.3661 10.9827 3.0043
25 1 8.9360 9.7417 5.0083
26 6 4.6632 6.5901 5.5749
27 6 5.2852 5.2325 5.9855
28 6 4.9339 4.2023 4.9873
29 8 5.4145 4.4906 3.6761
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8901
32 1 -0.3634 0.5138 -0.8899
33 1 1.8932 -0.5139 -0.8901
34 1 1.8934 -0.5139 0.8899
35 1 1.6768 1.9563 0.8899
36 1 1.6766 1.9563 -0.8900
37 1 4.6155 0.0655 -1.2331
38 1 4.7378 0.0938 -3.5641
39 1 3.9459 1.2945 -4.4323
40 1 3.8072 2.9786 2.1181
41 1 5.6268 4.8844 1.1015
42 1 3.9743 5.4940 0.8449
43 1 5.7424 6.9661 2.3362
44 1 4.0638 7.3775 2.7509
45 1 6.1482 9.7646 1.9521
46 1 4.7731 7.3026 6.3924
47 1 3.6053 6.4528 5.3512
48 1 6.3694 5.3315 6.0384
49 1 4.8998 4.9373 6.9615
50 1 5.3511 3.2483 5.3095
51 1 3.8485 4.1097 4.9492
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001150652663.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:42
Heat of formation + Delta-G solvation = -119.812448 kcal
Electronic energy + Delta-G solvation = -31678.132120 eV
Core-core repulsion = 27419.122582 eV
Total energy + Delta-G solvation = -4259.009538 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.210 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.61220 -40.51251 -39.63428 -36.92681 -36.78814 -35.92466 -34.84169 -34.10322
-33.77633 -32.91583 -30.71600 -29.63997 -27.27731 -27.04184 -25.48887 -24.08854
-22.83700 -22.35880 -21.88542 -21.50769 -20.75537 -19.53232 -18.89804 -18.42578
-17.75056 -17.73612 -17.17026 -16.74544 -16.49334 -16.13681 -16.12106 -15.67667
-15.56929 -15.33693 -15.18004 -14.95557 -14.52644 -14.49197 -14.25525 -14.18480
-13.86745 -13.74240 -13.38311 -13.22539 -13.02479 -12.81214 -12.77496 -12.43615
-12.30241 -12.23050 -12.00079 -11.96436 -11.80364 -11.59987 -11.44239 -11.34470
-11.24471 -10.81443 -10.57905 -10.45741 -10.27540 -10.06180 -9.83627 -8.68184
-7.86443 -5.31732 1.42338 1.45651 1.52872 1.66072 1.90907 2.25519
2.48581 2.53510 2.93890 3.27105 3.58286 3.69101 3.74767 3.98190
4.04416 4.05614 4.15010 4.22432 4.28791 4.29629 4.37096 4.47769
4.60081 4.64063 4.67309 4.80064 4.81060 4.87660 4.90734 5.02108
5.07400 5.16767 5.23415 5.27736 5.28151 5.36105 5.45808 5.50717
5.53550 5.54860 5.61430 5.70234 5.99182 6.12383 6.38774 6.59281
6.64194 7.16146 7.22411 7.37251 7.87394 7.92852 8.30705 9.18140
Molecular weight = 342.21amu
Principal moments of inertia in cm(-1)
A = 0.014301 B = 0.002765 C = 0.002457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1957.414101 B =10122.330700 C =11391.426081
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.108 4.108
3 C -0.130 4.130
4 C 0.162 3.838
5 H 0.157 0.843
6 N -0.720 5.720
7 C 0.699 3.301
8 N -0.855 5.855
9 O -0.619 6.619
10 C 0.486 3.514
11 O -0.563 6.563
12 N -0.708 5.708
13 C 0.141 3.859
14 C 0.082 3.918
15 H 0.075 0.925
16 C 0.173 3.827
17 N -0.603 5.603
18 C -0.258 4.258
19 H 0.064 0.936
20 C -0.051 4.051
21 N -0.935 5.935
22 Si 0.960 3.040
23 H -0.291 1.291
24 H -0.295 1.295
25 H -0.266 1.266
26 C 0.146 3.854
27 C -0.170 4.170
28 C 0.067 3.933
29 O -0.376 6.376
30 H 0.066 0.934
31 H 0.058 0.942
32 H 0.035 0.965
33 H 0.060 0.940
34 H 0.089 0.911
35 H 0.082 0.918
36 H 0.054 0.946
37 H 0.419 0.581
38 H 0.411 0.589
39 H 0.415 0.585
40 H 0.414 0.586
41 H 0.043 0.957
42 H 0.059 0.941
43 H 0.039 0.961
44 H 0.008 0.992
45 H 0.247 0.753
46 H 0.041 0.959
47 H 0.045 0.955
48 H 0.042 0.958
49 H 0.098 0.902
50 H 0.100 0.900
51 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.120 -27.239 -2.209 28.509
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.145 4.145
3 C -0.169 4.169
4 C 0.052 3.948
5 H 0.174 0.826
6 N -0.378 5.378
7 C 0.397 3.603
8 N -0.425 5.425
9 O -0.498 6.498
10 C 0.272 3.728
11 O -0.440 6.440
12 N -0.362 5.362
13 C 0.016 3.984
14 C 0.021 3.979
15 H 0.093 0.907
16 C 0.047 3.953
17 N -0.325 5.325
18 C -0.389 4.389
19 H 0.081 0.919
20 C -0.247 4.247
21 N -0.582 5.582
22 Si 0.789 3.211
23 H -0.219 1.219
24 H -0.222 1.222
25 H -0.191 1.191
26 C 0.020 3.980
27 C -0.210 4.210
28 C -0.009 4.009
29 O -0.294 6.294
30 H 0.085 0.915
31 H 0.077 0.923
32 H 0.055 0.945
33 H 0.078 0.922
34 H 0.107 0.893
35 H 0.101 0.899
36 H 0.073 0.927
37 H 0.256 0.744
38 H 0.242 0.758
39 H 0.247 0.753
40 H 0.251 0.749
41 H 0.061 0.939
42 H 0.077 0.923
43 H 0.058 0.942
44 H 0.026 0.974
45 H 0.056 0.944
46 H 0.059 0.941
47 H 0.063 0.937
48 H 0.061 0.939
49 H 0.116 0.884
50 H 0.118 0.882
51 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -8.270 -25.948 -2.947 27.393
hybrid contribution 1.180 0.898 -0.395 1.535
sum -7.089 -25.050 -3.342 26.247
Atomic orbital electron populations
1.21767 0.95903 1.02070 1.01363 1.21413 0.95785 0.94257 1.03054
1.21973 0.91871 0.99699 1.03390 1.20851 0.95961 0.89748 0.88244
0.82589 1.44525 1.57157 1.32874 1.03205 1.16218 0.80130 0.81972
0.81941 1.42787 1.58208 1.34728 1.06757 1.90949 1.44202 1.27882
1.86744 1.21854 0.77902 0.90599 0.82459 1.90758 1.48163 1.66899
1.38178 1.45728 1.66047 1.14507 1.09912 1.21064 0.98635 0.83474
0.95274 1.22675 0.93339 0.91842 0.90021 0.90690 1.21350 0.97396
0.90279 0.86253 1.43825 1.33506 1.54514 1.00658 1.19464 1.04140
1.11277 1.04005 0.91862 1.25724 1.01211 0.98457 0.99260 1.70187
1.34551 1.36354 1.17083 0.85364 0.80672 0.77051 0.77984 1.21867
1.22172 1.19067 1.20936 0.94273 0.94110 0.88705 1.22148 1.01260
0.97615 0.99993 1.21610 0.99124 0.97979 0.82203 1.87454 1.46388
1.69952 1.25627 0.91485 0.92292 0.94544 0.92154 0.89258 0.89906
0.92697 0.74401 0.75803 0.75282 0.74896 0.93852 0.92259 0.94241
0.97435 0.94372 0.94077 0.93684 0.93908 0.88392 0.88182 0.91737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16
2 C -0.11 -1.24 5.82 30.59 0.18 -1.07 16
3 C -0.13 -2.34 4.54 30.59 0.14 -2.21 16
4 C 0.16 2.91 3.01 44.25 0.13 3.04 16
5 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16
6 N -0.72 -12.15 4.66 -461.40 -2.15 -14.30 16
7 C 0.70 17.23 7.59 179.05 1.36 18.59 16
8 N -0.86 -12.97 8.88 -184.74 -1.64 -14.61 16
9 O -0.62 -22.76 13.03 18.49 0.24 -22.52 16
10 C 0.49 14.49 6.82 87.66 0.60 15.09 16
11 O -0.56 -23.52 13.68 19.41 0.27 -23.25 16
12 N -0.71 -19.36 5.49 -463.05 -2.54 -21.91 16
13 C 0.14 5.17 5.24 86.38 0.45 5.62 16
14 C 0.08 2.98 2.35 31.03 0.07 3.06 16
15 H 0.08 2.34 7.20 -2.39 -0.02 2.33 16
16 C 0.17 8.56 4.50 86.50 0.39 8.95 16
17 N -0.60 -30.27 2.59 -696.46 -1.80 -32.07 16
18 C -0.26 -14.52 9.43 84.03 0.79 -13.72 16
19 H 0.06 3.49 7.88 -2.91 -0.02 3.47 16
20 C -0.05 -2.98 4.88 84.86 0.41 -2.57 16
21 N -0.94 -57.32 10.98 21.65 0.24 -57.08 16
22 Si 0.96 47.05 29.58 68.60 2.03 49.08 16
23 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16
24 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16
25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16
26 C 0.15 5.76 5.68 87.40 0.50 6.26 16
27 C -0.17 -5.26 6.03 29.57 0.18 -5.08 16
28 C 0.07 1.79 6.04 70.32 0.42 2.21 16
29 O -0.38 -13.27 9.77 -144.94 -1.42 -14.69 16
30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16
31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
32 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16
33 H 0.06 0.72 7.75 -2.38 -0.02 0.70 16
34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16
35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
36 H 0.05 1.50 6.04 -2.38 -0.01 1.49 16
37 H 0.42 3.42 8.84 -92.71 -0.82 2.60 16
38 H 0.41 2.82 8.84 -92.71 -0.82 2.00 16
39 H 0.42 6.15 8.93 -92.71 -0.83 5.32 16
40 H 0.41 8.04 8.46 -92.71 -0.78 7.26 16
41 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16
42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16
43 H 0.04 2.27 6.24 -2.39 -0.01 2.25 16
44 H 0.01 0.41 8.02 -2.39 -0.02 0.39 16
45 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16
46 H 0.04 1.66 7.97 -2.39 -0.02 1.64 16
47 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16
48 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16
49 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16
50 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16
51 H 0.06 1.39 7.27 -2.39 -0.02 1.37 16
Total: -1.00 -89.07 401.24 -2.71 -91.78
By element:
Atomic # 1 Polarization: 24.88 SS G_CDS: -2.28 Total: 22.61 kcal
Atomic # 6 Polarization: 30.61 SS G_CDS: 6.34 Total: 36.95 kcal
Atomic # 7 Polarization: -132.06 SS G_CDS: -7.90 Total: -139.96 kcal
Atomic # 8 Polarization: -59.55 SS G_CDS: -0.91 Total: -60.46 kcal
Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal
Total: -89.07 -2.71 -91.78 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001150652663.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.034 kcal
(2) G-P(sol) polarization free energy of solvation -89.065 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.812 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds