Wall clock time and date at job start Sat Apr 11 2020 06:47:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47125 * 2 1
4 4 C 1.53001 * 109.47240 * 301.49614 * 3 2 1
5 5 C 1.53005 * 109.47276 * 294.88929 * 4 3 2
6 6 C 1.52999 * 109.47209 * 61.49723 * 3 2 1
7 7 N 1.46897 * 109.47112 * 65.00180 * 6 3 2
8 8 C 1.46900 * 111.00094 * 66.04512 * 7 6 3
9 9 C 1.46897 * 111.00251 * 189.99983 * 7 6 3
10 10 C 1.52995 * 109.47143 * 75.68344 * 9 7 6
11 11 H 1.09000 * 110.91688 * 301.92669 * 10 9 7
12 12 C 1.55156 * 111.00620 * 178.02925 * 10 9 7
13 13 C 1.54319 * 102.86589 * 206.23115 * 12 10 9
14 14 N 1.47030 * 107.27361 * 22.52319 * 13 12 10
15 15 C 1.34771 * 125.64563 * 180.97467 * 14 13 12
16 16 O 1.21282 * 119.99573 * 179.69290 * 15 14 13
17 17 C 1.50700 * 120.00256 * 359.68592 * 15 14 13
18 18 S 1.81001 * 109.47080 * 180.02562 * 17 15 14
19 19 C 1.76199 * 99.99794 * 179.97438 * 18 17 15
20 20 H 1.08005 * 120.00209 * 359.97438 * 19 18 17
21 21 C 1.38805 * 120.00159 * 180.02562 * 19 18 17
22 22 N 1.31635 * 119.99419 * 0.02562 * 21 19 18
23 23 Si 1.86798 * 120.00081 * 179.97438 * 21 19 18
24 24 H 1.48491 * 109.47170 * 269.99588 * 23 21 19
25 25 H 1.48504 * 109.47131 * 30.00207 * 23 21 19
26 26 H 1.48505 * 109.46632 * 149.99966 * 23 21 19
27 27 C 1.47425 * 108.70301 * 0.70168 * 14 13 12
28 28 H 1.09002 * 109.46720 * 301.90306 * 1 2 3
29 29 H 1.09004 * 109.46957 * 61.89947 * 1 2 3
30 30 H 1.08998 * 109.46908 * 181.90065 * 1 2 3
31 31 H 1.09004 * 109.47076 * 239.99591 * 2 1 3
32 32 H 1.09000 * 109.46749 * 119.99763 * 2 1 3
33 33 H 1.09007 * 109.47017 * 181.50095 * 3 2 1
34 34 H 1.09003 * 109.47319 * 54.88220 * 4 3 2
35 35 H 1.08991 * 109.47579 * 174.88623 * 4 3 2
36 36 H 1.09004 * 109.46899 * 306.03409 * 5 4 3
37 37 H 1.08996 * 109.47506 * 66.03294 * 5 4 3
38 38 H 1.09000 * 109.47339 * 186.03602 * 5 4 3
39 39 H 1.08993 * 109.47181 * 304.99607 * 6 3 2
40 40 H 1.09008 * 109.46956 * 184.99888 * 6 3 2
41 41 H 1.09001 * 109.47162 * 186.38709 * 8 7 6
42 42 H 1.09002 * 109.47307 * 306.38272 * 8 7 6
43 43 H 1.09002 * 109.47405 * 66.38429 * 8 7 6
44 44 H 1.09006 * 109.46798 * 315.68916 * 9 7 6
45 45 H 1.08993 * 109.47655 * 195.69119 * 9 7 6
46 46 H 1.09003 * 110.71830 * 324.78713 * 12 10 9
47 47 H 1.08993 * 110.72515 * 88.06048 * 12 10 9
48 48 H 1.08999 * 109.98334 * 263.04939 * 13 12 10
49 49 H 1.08992 * 109.77713 * 141.88000 * 13 12 10
50 50 H 1.08998 * 109.46831 * 60.00290 * 17 15 14
51 51 H 1.09005 * 109.46975 * 300.00289 * 17 15 14
52 52 H 0.97001 * 119.99547 * 179.97438 * 22 21 19
53 53 H 1.09000 * 110.36350 * 94.93684 * 27 14 13
54 54 H 1.08988 * 110.37204 * 217.15049 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.4995 2.1746 -1.2300
5 6 2.0808 1.5423 -2.4962
6 6 1.5611 2.1528 1.2676
7 7 2.1760 1.5232 2.4438
8 6 3.6299 1.7333 2.4536
9 6 1.5645 2.0163 3.6851
10 6 0.1907 1.3686 3.8691
11 1 -0.4568 1.5811 3.0184
12 6 -0.4672 1.8278 5.1971
13 6 -1.4078 0.6530 5.5387
14 7 -0.8947 -0.5345 4.8399
15 6 -1.4490 -1.7627 4.8676
16 8 -0.9406 -2.6714 4.2458
17 6 -2.7002 -2.0068 5.6712
18 16 -3.1930 -3.7408 5.5085
19 6 -4.6370 -3.7445 6.5183
20 1 -4.9559 -2.8362 7.0079
21 6 -5.3641 -4.9150 6.6853
22 7 -4.9745 -6.0224 6.0897
23 14 -6.8945 -4.9191 7.7563
24 1 -6.5188 -5.2465 9.1551
25 1 -7.5308 -3.5779 7.7155
26 1 -7.8505 -5.9363 7.2495
27 6 0.3227 -0.1577 4.0988
28 1 -0.3633 0.5431 0.8725
29 1 -0.3633 0.4841 -0.9066
30 1 -0.3633 -1.0271 0.0341
31 1 1.8934 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 3.1298 1.4426 -0.0269
34 1 0.4125 2.0962 -1.2510
35 1 1.7872 3.2248 -1.1833
36 1 3.1685 1.5239 -2.4267
37 1 1.7061 0.5239 -2.5988
38 1 1.7821 2.1286 -3.3652
39 1 0.4763 2.0754 1.3396
40 1 1.8484 3.2035 1.2260
41 1 4.0739 1.1637 3.2700
42 1 4.0518 1.3988 1.5058
43 1 3.8430 2.7933 2.5922
44 1 1.4512 3.0990 3.6290
45 1 2.2028 1.7612 4.5309
46 1 0.2854 1.9625 5.9740
47 1 -1.0375 2.7446 5.0482
48 1 -2.4195 0.8748 5.1989
49 1 -1.4056 0.4797 6.6148
50 1 -3.5002 -1.3652 5.3018
51 1 -2.5082 -1.7809 6.7202
52 1 -5.4824 -6.8405 6.2067
53 1 1.2107 -0.3766 4.6917
54 1 0.3647 -0.6842 3.1454
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713747477.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:40
Heat of formation + Delta-G solvation = -70.760125 kcal
Electronic energy + Delta-G solvation = -28565.235469 eV
Core-core repulsion = 24854.646214 eV
Total energy + Delta-G solvation = -3710.589255 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.208 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.09538 -39.78842 -38.42374 -36.55896 -34.59391 -33.38374 -32.01003 -30.85022
-30.34058 -29.24749 -27.77472 -27.29194 -25.74847 -24.52853 -24.04903 -22.44348
-21.06101 -20.65421 -19.71861 -19.55453 -18.02331 -17.54246 -16.91081 -16.89104
-16.65442 -16.33270 -15.98149 -15.92625 -15.73938 -15.43650 -14.66437 -14.57137
-14.31591 -14.30965 -14.09023 -13.81088 -13.79080 -13.56324 -13.37127 -13.22871
-13.15665 -13.02282 -12.89307 -12.81097 -12.67601 -12.61776 -12.47087 -12.18722
-12.04380 -11.85475 -11.79069 -11.72164 -11.49262 -11.25503 -11.14843 -11.08648
-11.07126 -10.94582 -10.29204 -9.65335 -9.12389 -8.69249 -8.35137 -6.14220
1.24190 1.42377 1.45014 1.56238 1.58099 2.13830 2.26918 2.94577
2.98723 3.25811 3.60765 3.66080 3.79163 3.92783 3.95824 4.00339
4.12617 4.20349 4.33714 4.35286 4.41168 4.43019 4.44946 4.51161
4.54813 4.57257 4.62415 4.69105 4.74547 4.75640 4.78467 4.83334
4.90831 4.93076 4.96113 4.99502 5.02841 5.09800 5.14157 5.15726
5.19478 5.32660 5.34795 5.38780 5.40644 5.43460 5.45955 5.53976
5.67002 6.19119 6.22276 6.23188 6.43942 7.05513 7.14139 8.74300
Molecular weight = 342.21amu
Principal moments of inertia in cm(-1)
A = 0.016651 B = 0.002221 C = 0.002064
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1681.138920 B =12605.690597 C =13560.411511
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.106 4.106
3 C -0.078 4.078
4 C -0.120 4.120
5 C -0.151 4.151
6 C 0.059 3.941
7 N -0.555 5.555
8 C 0.025 3.975
9 C 0.073 3.927
10 C -0.083 4.083
11 H 0.080 0.920
12 C -0.112 4.112
13 C 0.089 3.911
14 N -0.620 5.620
15 C 0.543 3.457
16 O -0.569 6.569
17 C -0.118 4.118
18 S -0.153 6.153
19 C -0.545 4.545
20 H 0.083 0.917
21 C 0.012 3.988
22 N -0.912 5.912
23 Si 1.001 2.999
24 H -0.267 1.267
25 H -0.257 1.257
26 H -0.277 1.277
27 C 0.125 3.875
28 H 0.051 0.949
29 H 0.062 0.938
30 H 0.029 0.971
31 H 0.055 0.945
32 H 0.054 0.946
33 H 0.072 0.928
34 H 0.063 0.937
35 H 0.066 0.934
36 H 0.055 0.945
37 H 0.049 0.951
38 H 0.057 0.943
39 H 0.073 0.927
40 H 0.040 0.960
41 H 0.066 0.934
42 H 0.070 0.930
43 H 0.032 0.968
44 H 0.058 0.942
45 H 0.082 0.918
46 H 0.094 0.906
47 H 0.108 0.892
48 H 0.075 0.925
49 H 0.077 0.923
50 H 0.104 0.896
51 H 0.105 0.895
52 H 0.271 0.729
53 H 0.061 0.939
54 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.534 26.743 -8.636 32.111
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.144 4.144
3 C -0.096 4.096
4 C -0.157 4.157
5 C -0.209 4.209
6 C -0.068 4.068
7 N -0.279 5.279
8 C -0.123 4.123
9 C -0.055 4.055
10 C -0.102 4.102
11 H 0.098 0.902
12 C -0.150 4.150
13 C -0.033 4.033
14 N -0.354 5.354
15 C 0.331 3.669
16 O -0.448 6.448
17 C -0.269 4.269
18 S 0.074 5.926
19 C -0.693 4.693
20 H 0.101 0.899
21 C -0.193 4.193
22 N -0.548 5.548
23 Si 0.822 3.178
24 H -0.192 1.192
25 H -0.181 1.181
26 H -0.202 1.202
27 C 0.003 3.997
28 H 0.070 0.930
29 H 0.081 0.919
30 H 0.048 0.952
31 H 0.073 0.927
32 H 0.072 0.928
33 H 0.090 0.910
34 H 0.082 0.918
35 H 0.085 0.915
36 H 0.074 0.926
37 H 0.068 0.932
38 H 0.076 0.924
39 H 0.091 0.909
40 H 0.058 0.942
41 H 0.085 0.915
42 H 0.088 0.912
43 H 0.051 0.949
44 H 0.076 0.924
45 H 0.100 0.900
46 H 0.112 0.888
47 H 0.126 0.874
48 H 0.093 0.907
49 H 0.095 0.905
50 H 0.122 0.878
51 H 0.123 0.877
52 H 0.080 0.920
53 H 0.080 0.920
54 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 16.153 24.667 -9.602 31.010
hybrid contribution -1.288 0.936 1.151 1.965
sum 14.865 25.603 -8.451 30.788
Atomic orbital electron populations
1.21813 0.96825 1.00344 1.01612 1.21349 0.95203 0.96746 1.01054
1.21180 1.00138 0.94586 0.93717 1.21581 1.00824 0.99388 0.93952
1.21776 1.00937 1.00737 0.97403 1.22249 0.99609 0.95372 0.89588
1.61867 1.04527 1.59161 1.02318 1.22409 0.87356 0.99613 1.02895
1.22008 0.93702 0.97468 0.92361 1.22290 0.97488 0.92040 0.98415
0.90169 1.22687 0.98613 0.97015 0.96699 1.22360 0.99115 0.84338
0.97509 1.48543 1.28289 1.08421 1.50174 1.19784 0.84720 0.81556
0.80862 1.90683 1.64376 1.43866 1.45895 1.23290 0.98002 1.02439
1.03159 1.85609 1.34055 1.06618 1.66292 1.23183 1.12118 0.99562
1.34425 0.89919 1.26174 1.01818 0.93932 0.97349 1.70196 1.40789
1.00953 1.42858 0.84922 0.76346 0.78726 0.77781 1.19213 1.18103
1.20229 1.22147 0.85896 0.96168 0.95460 0.92964 0.91917 0.95224
0.92662 0.92752 0.90954 0.91848 0.91484 0.92623 0.93227 0.92376
0.90898 0.94218 0.91530 0.91179 0.94909 0.92358 0.89957 0.88772
0.87378 0.90699 0.90468 0.87759 0.87682 0.91965 0.92043 0.92851
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.11 9.21 71.98 0.66 -2.45 16
2 C -0.11 -1.99 5.34 30.60 0.16 -1.83 16
3 C -0.08 -1.07 2.09 -10.79 -0.02 -1.10 16
4 C -0.12 -1.44 5.16 30.60 0.16 -1.28 16
5 C -0.15 -1.81 9.52 71.98 0.69 -1.13 16
6 C 0.06 0.79 3.99 86.30 0.34 1.13 16
7 N -0.55 -7.92 3.93 -922.48 -3.62 -11.55 16
8 C 0.03 0.30 9.35 127.69 1.19 1.49 16
9 C 0.07 0.87 4.45 86.30 0.38 1.26 16
10 C -0.08 -1.29 3.06 -9.40 -0.03 -1.32 16
11 H 0.08 1.34 6.78 -2.39 -0.02 1.33 16
12 C -0.11 -1.34 6.42 31.78 0.20 -1.13 16
13 C 0.09 1.74 6.48 86.73 0.56 2.30 16
14 N -0.62 -18.45 3.33 -811.81 -2.70 -21.15 16
15 C 0.54 22.41 7.87 87.66 0.69 23.10 16
16 O -0.57 -29.02 16.12 -3.04 -0.05 -29.06 16
17 C -0.12 -5.03 5.35 71.24 0.38 -4.65 16
18 S -0.15 -8.85 20.57 -56.49 -1.16 -10.01 16
19 C -0.55 -31.85 9.50 67.96 0.65 -31.20 16
20 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16
21 C 0.01 0.69 5.49 84.86 0.47 1.16 16
22 N -0.91 -57.01 13.22 21.65 0.29 -56.73 16
23 Si 1.00 44.15 29.55 68.60 2.03 46.18 16
24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16
25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16
26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16
27 C 0.13 3.18 6.19 86.86 0.54 3.72 16
28 H 0.05 1.11 6.21 -2.39 -0.01 1.10 16
29 H 0.06 1.13 6.39 -2.38 -0.02 1.11 16
30 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16
31 H 0.05 1.02 6.78 -2.38 -0.02 1.00 16
32 H 0.05 1.25 7.71 -2.39 -0.02 1.23 16
33 H 0.07 0.97 6.22 -2.38 -0.01 0.96 16
34 H 0.06 0.83 6.17 -2.39 -0.01 0.81 16
35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
36 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16
37 H 0.05 0.68 6.91 -2.39 -0.02 0.66 16
38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
39 H 0.07 1.08 4.69 -2.39 -0.01 1.07 16
40 H 0.04 0.46 8.12 -2.38 -0.02 0.44 16
41 H 0.07 0.80 8.11 -2.39 -0.02 0.78 16
42 H 0.07 0.83 6.12 -2.39 -0.01 0.82 16
43 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16
44 H 0.06 0.53 8.00 -2.38 -0.02 0.51 16
45 H 0.08 0.93 7.89 -2.39 -0.02 0.91 16
46 H 0.09 0.88 8.04 -2.39 -0.02 0.86 16
47 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16
48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16
50 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16
51 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16
52 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16
53 H 0.06 1.56 8.01 -2.39 -0.02 1.55 16
54 H 0.05 1.67 8.03 -2.39 -0.02 1.65 16
Total: -1.00 -77.80 425.21 2.65 -75.14
By element:
Atomic # 1 Polarization: 18.25 SS G_CDS: 0.85 Total: 19.09 kcal
Atomic # 6 Polarization: -18.95 SS G_CDS: 7.03 Total: -11.92 kcal
Atomic # 7 Polarization: -83.39 SS G_CDS: -6.04 Total: -89.42 kcal
Atomic # 8 Polarization: -29.02 SS G_CDS: -0.05 Total: -29.06 kcal
Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal
Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.01 kcal
Total: -77.80 2.65 -75.14 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713747477.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.384 kcal
(2) G-P(sol) polarization free energy of solvation -77.795 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.411 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.144 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds