Wall clock time and date at job start Sat Apr 11 2020 06:46:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.50692 * 2 1
4 4 C 1.53097 * 109.50130 * 239.91805 * 2 1 3
5 5 N 1.47016 * 109.25580 * 183.16910 * 4 2 1
6 6 C 1.46898 * 110.99994 * 182.38964 * 5 4 2
7 7 C 1.53006 * 109.46953 * 169.99953 * 6 5 4
8 8 C 1.52998 * 109.47044 * 180.02562 * 7 6 5
9 9 N 1.46500 * 109.47277 * 180.02562 * 8 7 6
10 10 C 1.34773 * 120.00168 * 180.02562 * 9 8 7
11 11 O 1.21583 * 120.00228 * 359.97438 * 10 9 8
12 12 N 1.34780 * 119.99801 * 180.02562 * 10 9 8
13 13 C 1.46500 * 120.00022 * 179.97438 * 12 10 9
14 14 C 1.50696 * 109.47475 * 179.97438 * 13 12 10
15 15 O 1.21289 * 119.99975 * 0.02562 * 14 13 12
16 16 N 1.34781 * 120.00281 * 180.02562 * 14 13 12
17 17 C 1.37090 * 119.99987 * 180.02562 * 16 14 13
18 18 H 1.08004 * 120.00404 * 359.97438 * 17 16 14
19 19 C 1.38950 * 120.00105 * 179.97438 * 17 16 14
20 20 N 1.31412 * 120.00280 * 180.02562 * 19 17 16
21 21 Si 1.86799 * 119.99832 * 359.97438 * 19 17 16
22 22 H 1.48501 * 109.47180 * 90.00023 * 21 19 17
23 23 H 1.48496 * 109.47255 * 210.00037 * 21 19 17
24 24 H 1.48499 * 109.47455 * 330.00202 * 21 19 17
25 25 C 1.47015 * 110.75095 * 58.61926 * 5 4 2
26 26 C 1.53098 * 109.25723 * 301.38182 * 25 5 4
27 27 H 1.09000 * 109.51173 * 176.78603 * 26 25 5
28 28 C 1.53005 * 109.54461 * 296.89315 * 26 25 5
29 29 O 1.43014 * 109.54072 * 120.11487 * 2 1 3
30 30 H 1.08996 * 109.47225 * 180.08592 * 1 2 3
31 31 H 1.09007 * 109.47018 * 300.08008 * 1 2 3
32 32 H 1.08998 * 109.47380 * 60.08129 * 1 2 3
33 33 H 1.09000 * 109.50984 * 63.24033 * 4 2 1
34 34 H 1.08996 * 109.54131 * 303.12739 * 4 2 1
35 35 H 1.08994 * 109.47795 * 290.00356 * 6 5 4
36 36 H 1.08996 * 109.47199 * 50.00736 * 6 5 4
37 37 H 1.08994 * 109.47199 * 300.00767 * 7 6 5
38 38 H 1.09009 * 109.46751 * 60.00423 * 7 6 5
39 39 H 1.08994 * 109.47742 * 300.00426 * 8 7 6
40 40 H 1.09000 * 109.46878 * 60.00356 * 8 7 6
41 41 H 0.97003 * 119.99544 * 0.02562 * 9 8 7
42 42 H 0.96999 * 120.00132 * 359.97438 * 12 10 9
43 43 H 1.08995 * 109.47158 * 300.00134 * 13 12 10
44 44 H 1.09000 * 109.47067 * 59.99605 * 13 12 10
45 45 H 0.96997 * 119.99672 * 359.97438 * 16 14 13
46 46 H 0.96998 * 119.99758 * 180.02562 * 20 19 17
47 47 H 1.08999 * 109.50673 * 61.31448 * 25 5 4
48 48 H 1.09004 * 109.50788 * 181.44864 * 25 5 4
49 49 H 1.09000 * 109.47199 * 179.80564 * 28 26 25
50 50 H 1.09000 * 109.47135 * 299.80566 * 28 26 25
51 51 H 1.09005 * 109.46683 * 59.80357 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8940 1.0274 0.0000
4 6 2.0411 -0.7234 -1.2488
5 7 3.5093 -0.7870 -1.2055
6 6 4.0445 -1.4249 -2.4156
7 6 5.5642 -1.2517 -2.4538
8 6 6.1216 -1.9155 -3.7146
9 7 7.5768 -1.7503 -3.7509
10 6 8.2872 -2.2575 -4.7777
11 8 7.7205 -2.8526 -5.6738
12 7 9.6261 -2.1059 -4.8108
13 6 10.3984 -2.6577 -5.9267
14 6 11.8604 -2.3529 -5.7252
15 8 12.2218 -1.7358 -4.7455
16 7 12.7664 -2.7659 -6.6335
17 6 14.0964 -2.4890 -6.4498
18 1 14.4183 -1.9396 -5.5775
19 6 15.0306 -2.9153 -7.3860
20 7 16.3056 -2.6503 -7.2097
21 14 14.4742 -3.8663 -8.8944
22 1 14.1727 -2.9162 -9.9952
23 1 15.5534 -4.7925 -9.3216
24 1 13.2539 -4.6462 -8.5657
25 6 3.9649 -1.4869 0.0044
26 6 3.4344 -0.7559 1.2406
27 1 3.7218 -1.3032 2.1384
28 6 4.0230 0.6555 1.2925
29 8 2.0084 -0.6762 1.1659
30 1 -0.3633 -1.0276 0.0015
31 1 -0.3633 0.5151 0.8893
32 1 -0.3634 0.5126 -0.8907
33 1 1.7266 -0.1789 -2.1391
34 1 1.6337 -1.7339 -1.2771
35 1 3.8000 -2.4870 -2.4051
36 1 3.6036 -0.9593 -3.2971
37 1 5.8087 -0.1896 -2.4644
38 1 6.0052 -1.7173 -1.5723
39 1 5.8771 -2.9776 -3.7045
40 1 5.6806 -1.4496 -4.5958
41 1 8.0290 -1.2758 -3.0358
42 1 10.0782 -1.6314 -4.0958
43 1 10.2545 -3.7373 -5.9694
44 1 10.0594 -2.2088 -6.8603
45 1 12.4774 -3.2597 -7.4168
46 1 16.9576 -2.9476 -7.8634
47 1 3.5881 -2.5097 -0.0032
48 1 5.0545 -1.4999 0.0289
49 1 3.6419 1.1760 2.1711
50 1 5.1098 0.5941 1.3495
51 1 3.7365 1.2018 0.3938
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000343885214.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:06
Heat of formation + Delta-G solvation = -108.745566 kcal
Electronic energy + Delta-G solvation = -29147.251002 eV
Core-core repulsion = 24888.721360 eV
Total energy + Delta-G solvation = -4258.529642 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.210 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.51115 -39.91562 -38.42712 -37.06457 -35.16002 -34.45709 -33.86022 -33.72690
-31.96639 -31.76250 -30.33691 -27.95931 -27.38370 -26.24391 -24.35002 -23.45074
-23.16360 -21.48945 -20.65636 -19.92484 -19.64855 -18.81518 -18.03229 -17.05418
-16.95656 -16.21991 -16.14154 -15.79341 -15.59389 -15.47121 -15.12815 -14.97016
-14.84566 -14.54034 -14.14649 -14.02469 -13.81427 -13.44859 -13.15504 -13.00870
-12.88172 -12.75613 -12.49419 -12.37056 -12.31424 -12.23643 -12.16356 -12.05968
-11.83711 -11.67984 -11.52563 -11.23769 -11.06264 -10.72177 -10.64373 -10.15699
-10.06282 -9.98983 -9.70023 -9.24200 -8.86377 -8.77044 -8.68959 -8.30606
-6.41074 -3.93654 2.69491 2.99681 3.04427 3.12530 3.21792 3.32161
3.34093 3.57603 4.03408 4.21994 4.30571 4.35027 4.43409 4.56446
4.60973 4.62160 4.68109 4.75533 4.83004 4.89412 4.95019 5.07879
5.09170 5.14059 5.15836 5.18408 5.27144 5.29960 5.39625 5.46797
5.51702 5.62014 5.64417 5.66619 5.75864 5.78728 5.83733 5.85700
5.89569 6.40348 6.45100 6.49578 6.63410 6.78403 7.01678 7.44809
8.00016 8.16045 8.44211 8.71883 8.81487 9.29672 9.63418 10.71103
Molecular weight = 342.21amu
Principal moments of inertia in cm(-1)
A = 0.032556 B = 0.001416 C = 0.001372
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 859.861600 B =19764.925967 C =20407.669016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.086 3.914
3 H 0.070 0.930
4 C 0.024 3.976
5 N -0.533 5.533
6 C 0.059 3.941
7 C -0.128 4.128
8 C 0.142 3.858
9 N -0.749 5.749
10 C 0.705 3.295
11 O -0.599 6.599
12 N -0.725 5.725
13 C 0.126 3.874
14 C 0.438 3.562
15 O -0.580 6.580
16 N -0.576 5.576
17 C -0.310 4.310
18 H 0.121 0.879
19 C 0.046 3.954
20 N -0.875 5.875
21 Si 0.879 3.121
22 H -0.269 1.269
23 H -0.275 1.275
24 H -0.267 1.267
25 C 0.019 3.981
26 C 0.090 3.910
27 H 0.104 0.896
28 C -0.176 4.176
29 O -0.378 6.378
30 H 0.062 0.938
31 H 0.066 0.934
32 H 0.072 0.928
33 H 0.086 0.914
34 H 0.043 0.957
35 H 0.040 0.960
36 H 0.081 0.919
37 H 0.080 0.920
38 H 0.070 0.930
39 H 0.063 0.937
40 H 0.066 0.934
41 H 0.398 0.602
42 H 0.408 0.592
43 H 0.083 0.917
44 H 0.083 0.917
45 H 0.375 0.625
46 H 0.275 0.725
47 H 0.043 0.957
48 H 0.090 0.910
49 H 0.057 0.943
50 H 0.065 0.935
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.682 3.975 13.405 33.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.028 3.972
3 H 0.088 0.912
4 C -0.104 4.104
5 N -0.258 5.258
6 C -0.069 4.069
7 C -0.166 4.166
8 C 0.017 3.983
9 N -0.405 5.405
10 C 0.405 3.595
11 O -0.478 6.478
12 N -0.383 5.383
13 C -0.002 4.002
14 C 0.224 3.776
15 O -0.464 6.464
16 N -0.214 5.214
17 C -0.439 4.439
18 H 0.139 0.861
19 C -0.158 4.158
20 N -0.514 5.514
21 Si 0.705 3.295
22 H -0.194 1.194
23 H -0.200 1.200
24 H -0.192 1.192
25 C -0.109 4.109
26 C 0.032 3.968
27 H 0.122 0.878
28 C -0.233 4.233
29 O -0.298 6.298
30 H 0.081 0.919
31 H 0.085 0.915
32 H 0.091 0.909
33 H 0.104 0.896
34 H 0.061 0.939
35 H 0.058 0.942
36 H 0.099 0.901
37 H 0.098 0.902
38 H 0.088 0.912
39 H 0.082 0.918
40 H 0.084 0.916
41 H 0.231 0.769
42 H 0.245 0.755
43 H 0.101 0.899
44 H 0.101 0.899
45 H 0.208 0.792
46 H 0.086 0.914
47 H 0.061 0.939
48 H 0.108 0.892
49 H 0.076 0.924
50 H 0.084 0.916
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -30.643 4.218 13.289 33.665
hybrid contribution 0.189 -1.136 -0.888 1.454
sum -30.454 3.082 12.401 33.026
Atomic orbital electron populations
1.21755 0.92844 1.02962 1.02729 1.22151 0.94675 0.96070 0.84294
0.91187 1.22827 0.87711 1.00357 0.99555 1.62173 1.08697 1.52803
1.02126 1.22007 0.94797 0.97440 0.92680 1.21783 0.94855 1.02362
0.97638 1.21044 0.78900 1.00659 0.97683 1.45004 1.07586 1.62177
1.25738 1.15832 0.81476 0.79777 0.82442 1.90901 1.70247 1.47905
1.38778 1.44753 1.04880 1.61172 1.27474 1.20797 0.90124 0.99586
0.89742 1.19661 0.86631 0.85649 0.85618 1.90532 1.80357 1.44835
1.30665 1.42112 1.07646 1.50196 1.21443 1.19441 0.79365 1.34879
1.10216 0.86095 1.25058 0.95055 0.97551 0.98185 1.69618 1.00574
1.45067 1.36093 0.86672 0.79055 0.80499 0.83280 1.19387 1.19991
1.19207 1.22873 1.01568 0.95963 0.90478 1.22265 0.80674 0.96591
0.97286 0.87780 1.22286 1.01430 0.96847 1.02749 1.88047 1.20833
1.78105 1.42791 0.91915 0.91525 0.90897 0.89594 0.93896 0.94220
0.90087 0.90152 0.91175 0.91848 0.91596 0.76873 0.75461 0.89912
0.89892 0.79223 0.91391 0.93910 0.89157 0.92391 0.91551 0.90978
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.71 9.57 37.16 0.36 -0.36 16
2 C 0.09 0.55 3.03 -26.68 -0.08 0.47 16
3 H 0.07 0.46 6.49 -51.93 -0.34 0.12 16
4 C 0.02 0.15 4.93 -3.71 -0.02 0.13 16
5 N -0.53 -3.50 4.10 -234.31 -0.96 -4.46 16
6 C 0.06 0.37 4.96 -3.82 -0.02 0.35 16
7 C -0.13 -0.83 5.26 -26.73 -0.14 -0.97 16
8 C 0.14 1.31 5.67 -4.04 -0.02 1.29 16
9 N -0.75 -8.30 5.56 -65.23 -0.36 -8.66 16
10 C 0.71 10.92 8.57 -86.92 -0.74 10.18 16
11 O -0.60 -11.29 16.34 5.29 0.09 -11.20 16
12 N -0.73 -11.61 5.53 -66.42 -0.37 -11.97 16
13 C 0.13 2.21 6.15 -5.20 -0.03 2.17 16
14 C 0.44 9.62 7.85 -10.99 -0.09 9.53 16
15 O -0.58 -14.55 15.24 5.55 0.08 -14.46 16
16 N -0.58 -13.38 5.09 -10.97 -0.06 -13.44 16
17 C -0.31 -8.54 10.16 -14.94 -0.15 -8.70 16
18 H 0.12 3.78 7.39 -52.48 -0.39 3.40 16
19 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16
20 N -0.87 -24.92 13.96 55.50 0.77 -24.14 16
21 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16
22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16
23 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16
24 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16
25 C 0.02 0.12 4.85 -3.71 -0.02 0.11 16
26 C 0.09 0.59 3.92 -26.68 -0.10 0.49 16
27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
28 C -0.18 -1.07 8.89 37.16 0.33 -0.74 16
29 O -0.38 -3.10 10.29 -35.23 -0.36 -3.46 16
30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16
31 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16
32 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16
33 H 0.09 0.45 8.09 -51.93 -0.42 0.03 16
34 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16
35 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16
36 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16
37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
38 H 0.07 0.43 6.52 -51.92 -0.34 0.10 16
39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
41 H 0.40 3.49 8.49 -40.82 -0.35 3.14 16
42 H 0.41 6.34 7.45 -40.82 -0.30 6.03 16
43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
44 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16
45 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16
46 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16
47 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16
48 H 0.09 0.52 6.38 -51.93 -0.33 0.19 16
49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
50 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
51 H 0.07 0.50 6.13 -51.93 -0.32 0.18 16
LS Contribution 406.89 15.07 6.13 6.13
Total: -1.00 -33.70 406.89 -9.10 -42.79
By element:
Atomic # 1 Polarization: 22.06 SS G_CDS: -8.52 Total: 13.54 kcal
Atomic # 6 Polarization: 15.91 SS G_CDS: -0.83 Total: 15.08 kcal
Atomic # 7 Polarization: -61.71 SS G_CDS: -0.97 Total: -62.68 kcal
Atomic # 8 Polarization: -28.94 SS G_CDS: -0.19 Total: -29.13 kcal
Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -33.70 -9.10 -42.79 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000343885214.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.951 kcal
(2) G-P(sol) polarization free energy of solvation -33.699 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.650 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds