Wall clock time and date at job start Sat Apr 11 2020 06:46:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.50692 * 2 1
4 4 C 1.53097 * 109.50130 * 239.91805 * 2 1 3
5 5 N 1.47016 * 109.25580 * 183.16910 * 4 2 1
6 6 C 1.46898 * 110.99994 * 182.38964 * 5 4 2
7 7 C 1.53006 * 109.46953 * 169.99953 * 6 5 4
8 8 C 1.52998 * 109.47044 * 180.02562 * 7 6 5
9 9 N 1.46500 * 109.47277 * 180.02562 * 8 7 6
10 10 C 1.34773 * 120.00168 * 180.02562 * 9 8 7
11 11 O 1.21583 * 120.00228 * 359.97438 * 10 9 8
12 12 N 1.34780 * 119.99801 * 180.02562 * 10 9 8
13 13 C 1.46500 * 120.00022 * 179.97438 * 12 10 9
14 14 C 1.50696 * 109.47475 * 179.97438 * 13 12 10
15 15 O 1.21289 * 119.99975 * 0.02562 * 14 13 12
16 16 N 1.34781 * 120.00281 * 180.02562 * 14 13 12
17 17 C 1.37090 * 119.99987 * 180.02562 * 16 14 13
18 18 H 1.08004 * 120.00404 * 359.97438 * 17 16 14
19 19 C 1.38950 * 120.00105 * 179.97438 * 17 16 14
20 20 N 1.31412 * 120.00280 * 180.02562 * 19 17 16
21 21 Si 1.86799 * 119.99832 * 359.97438 * 19 17 16
22 22 H 1.48501 * 109.47180 * 90.00023 * 21 19 17
23 23 H 1.48496 * 109.47255 * 210.00037 * 21 19 17
24 24 H 1.48499 * 109.47455 * 330.00202 * 21 19 17
25 25 C 1.47015 * 110.75095 * 58.61926 * 5 4 2
26 26 C 1.53098 * 109.25723 * 301.38182 * 25 5 4
27 27 H 1.09000 * 109.51173 * 176.78603 * 26 25 5
28 28 C 1.53005 * 109.54461 * 296.89315 * 26 25 5
29 29 O 1.43014 * 109.54072 * 120.11487 * 2 1 3
30 30 H 1.08996 * 109.47225 * 180.08592 * 1 2 3
31 31 H 1.09007 * 109.47018 * 300.08008 * 1 2 3
32 32 H 1.08998 * 109.47380 * 60.08129 * 1 2 3
33 33 H 1.09000 * 109.50984 * 63.24033 * 4 2 1
34 34 H 1.08996 * 109.54131 * 303.12739 * 4 2 1
35 35 H 1.08994 * 109.47795 * 290.00356 * 6 5 4
36 36 H 1.08996 * 109.47199 * 50.00736 * 6 5 4
37 37 H 1.08994 * 109.47199 * 300.00767 * 7 6 5
38 38 H 1.09009 * 109.46751 * 60.00423 * 7 6 5
39 39 H 1.08994 * 109.47742 * 300.00426 * 8 7 6
40 40 H 1.09000 * 109.46878 * 60.00356 * 8 7 6
41 41 H 0.97003 * 119.99544 * 0.02562 * 9 8 7
42 42 H 0.96999 * 120.00132 * 359.97438 * 12 10 9
43 43 H 1.08995 * 109.47158 * 300.00134 * 13 12 10
44 44 H 1.09000 * 109.47067 * 59.99605 * 13 12 10
45 45 H 0.96997 * 119.99672 * 359.97438 * 16 14 13
46 46 H 0.96998 * 119.99758 * 180.02562 * 20 19 17
47 47 H 1.08999 * 109.50673 * 61.31448 * 25 5 4
48 48 H 1.09004 * 109.50788 * 181.44864 * 25 5 4
49 49 H 1.09000 * 109.47199 * 179.80564 * 28 26 25
50 50 H 1.09000 * 109.47135 * 299.80566 * 28 26 25
51 51 H 1.09005 * 109.46683 * 59.80357 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8940 1.0274 0.0000
4 6 2.0411 -0.7234 -1.2488
5 7 3.5093 -0.7870 -1.2055
6 6 4.0445 -1.4249 -2.4156
7 6 5.5642 -1.2517 -2.4538
8 6 6.1216 -1.9155 -3.7146
9 7 7.5768 -1.7503 -3.7509
10 6 8.2872 -2.2575 -4.7777
11 8 7.7205 -2.8526 -5.6738
12 7 9.6261 -2.1059 -4.8108
13 6 10.3984 -2.6577 -5.9267
14 6 11.8604 -2.3529 -5.7252
15 8 12.2218 -1.7358 -4.7455
16 7 12.7664 -2.7659 -6.6335
17 6 14.0964 -2.4890 -6.4498
18 1 14.4183 -1.9396 -5.5775
19 6 15.0306 -2.9153 -7.3860
20 7 16.3056 -2.6503 -7.2097
21 14 14.4742 -3.8663 -8.8944
22 1 14.1727 -2.9162 -9.9952
23 1 15.5534 -4.7925 -9.3216
24 1 13.2539 -4.6462 -8.5657
25 6 3.9649 -1.4869 0.0044
26 6 3.4344 -0.7559 1.2406
27 1 3.7218 -1.3032 2.1384
28 6 4.0230 0.6555 1.2925
29 8 2.0084 -0.6762 1.1659
30 1 -0.3633 -1.0276 0.0015
31 1 -0.3633 0.5151 0.8893
32 1 -0.3634 0.5126 -0.8907
33 1 1.7266 -0.1789 -2.1391
34 1 1.6337 -1.7339 -1.2771
35 1 3.8000 -2.4870 -2.4051
36 1 3.6036 -0.9593 -3.2971
37 1 5.8087 -0.1896 -2.4644
38 1 6.0052 -1.7173 -1.5723
39 1 5.8771 -2.9776 -3.7045
40 1 5.6806 -1.4496 -4.5958
41 1 8.0290 -1.2758 -3.0358
42 1 10.0782 -1.6314 -4.0958
43 1 10.2545 -3.7373 -5.9694
44 1 10.0594 -2.2088 -6.8603
45 1 12.4774 -3.2597 -7.4168
46 1 16.9576 -2.9476 -7.8634
47 1 3.5881 -2.5097 -0.0032
48 1 5.0545 -1.4999 0.0289
49 1 3.6419 1.1760 2.1711
50 1 5.1098 0.5941 1.3495
51 1 3.7365 1.2018 0.3938
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000343885214.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:05
Heat of formation + Delta-G solvation = -136.407317 kcal
Electronic energy + Delta-G solvation = -29148.450505 eV
Core-core repulsion = 24888.721360 eV
Total energy + Delta-G solvation = -4259.729146 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.210 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.24732 -40.97592 -40.14238 -37.70706 -36.31714 -35.94259 -35.27926 -34.32339
-33.82839 -32.65715 -30.91094 -29.34931 -27.85509 -27.12835 -25.98885 -24.07062
-23.77618 -22.18768 -21.72257 -21.45667 -20.56910 -20.42088 -19.42211 -17.76455
-17.52079 -17.42898 -17.10710 -17.06638 -16.67866 -16.52556 -16.20200 -15.89909
-15.70611 -15.59938 -15.38931 -15.13952 -14.90386 -14.59782 -14.31245 -13.98451
-13.92872 -13.83536 -13.42810 -13.37037 -13.19631 -12.95363 -12.85982 -12.81485
-12.71820 -12.43972 -12.43557 -12.21101 -12.03304 -11.99614 -11.60635 -11.57253
-11.43692 -11.20843 -10.64466 -10.52589 -10.42468 -10.31048 -9.80512 -9.37485
-8.44899 -6.06838 1.32044 1.34916 1.44470 1.59744 1.79805 2.12459
2.21251 2.67551 2.80529 2.87414 3.11636 3.34030 3.78702 3.85307
3.92948 3.99832 4.04433 4.07902 4.12715 4.24028 4.29107 4.41746
4.42803 4.45412 4.47357 4.52979 4.61389 4.66823 4.72908 4.75269
4.79117 4.81593 5.00381 5.05511 5.13936 5.15843 5.19883 5.26993
5.30138 5.40887 5.48542 5.51819 5.88997 5.93729 5.97183 5.98270
6.29102 6.49684 6.78963 7.03002 7.29500 7.53270 7.79115 8.71514
Molecular weight = 342.21amu
Principal moments of inertia in cm(-1)
A = 0.032556 B = 0.001416 C = 0.001372
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 859.861600 B =19764.925967 C =20407.669016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.083 3.917
3 H 0.068 0.932
4 C 0.025 3.975
5 N -0.536 5.536
6 C 0.061 3.939
7 C -0.113 4.113
8 C 0.143 3.857
9 N -0.733 5.733
10 C 0.704 3.296
11 O -0.632 6.632
12 N -0.727 5.727
13 C 0.138 3.862
14 C 0.446 3.554
15 O -0.614 6.614
16 N -0.578 5.578
17 C -0.332 4.332
18 H 0.064 0.936
19 C -0.007 4.007
20 N -0.926 5.926
21 Si 0.958 3.042
22 H -0.257 1.257
23 H -0.274 1.274
24 H -0.233 1.233
25 C 0.021 3.979
26 C 0.085 3.915
27 H 0.111 0.889
28 C -0.169 4.169
29 O -0.398 6.398
30 H 0.057 0.943
31 H 0.064 0.936
32 H 0.089 0.911
33 H 0.097 0.903
34 H 0.036 0.964
35 H 0.037 0.963
36 H 0.086 0.914
37 H 0.083 0.917
38 H 0.076 0.924
39 H 0.056 0.944
40 H 0.061 0.939
41 H 0.411 0.589
42 H 0.410 0.590
43 H 0.101 0.899
44 H 0.102 0.898
45 H 0.392 0.608
46 H 0.281 0.719
47 H 0.034 0.966
48 H 0.098 0.902
49 H 0.055 0.945
50 H 0.073 0.927
51 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -32.859 3.316 12.336 35.255
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.025 3.975
3 H 0.086 0.914
4 C -0.103 4.103
5 N -0.261 5.261
6 C -0.067 4.067
7 C -0.151 4.151
8 C 0.019 3.981
9 N -0.389 5.389
10 C 0.404 3.596
11 O -0.514 6.514
12 N -0.385 5.385
13 C 0.010 3.990
14 C 0.233 3.767
15 O -0.500 6.500
16 N -0.218 5.218
17 C -0.461 4.461
18 H 0.082 0.918
19 C -0.207 4.207
20 N -0.566 5.566
21 Si 0.778 3.222
22 H -0.181 1.181
23 H -0.199 1.199
24 H -0.156 1.156
25 C -0.107 4.107
26 C 0.027 3.973
27 H 0.129 0.871
28 C -0.226 4.226
29 O -0.318 6.318
30 H 0.076 0.924
31 H 0.083 0.917
32 H 0.108 0.892
33 H 0.116 0.884
34 H 0.054 0.946
35 H 0.055 0.945
36 H 0.104 0.896
37 H 0.102 0.898
38 H 0.095 0.905
39 H 0.075 0.925
40 H 0.079 0.921
41 H 0.247 0.753
42 H 0.248 0.752
43 H 0.118 0.882
44 H 0.120 0.880
45 H 0.228 0.772
46 H 0.091 0.909
47 H 0.052 0.948
48 H 0.117 0.883
49 H 0.074 0.926
50 H 0.092 0.908
51 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -32.859 3.580 12.266 35.256
hybrid contribution 0.835 -0.844 -0.406 1.255
sum -32.024 2.736 11.860 34.259
Atomic orbital electron populations
1.21762 0.91859 1.02885 1.03487 1.22262 0.95504 0.95797 0.83914
0.91366 1.22840 0.87458 1.00080 0.99934 1.62188 1.08966 1.52753
1.02177 1.21979 0.94539 0.97361 0.92838 1.21638 0.94878 1.02217
0.96384 1.21140 0.77595 1.00547 0.98861 1.44956 1.08235 1.60953
1.24778 1.15934 0.81107 0.79676 0.82887 1.90880 1.70697 1.49503
1.40288 1.44717 1.05196 1.61385 1.27225 1.20683 0.86459 1.00876
0.91020 1.20509 0.88364 0.83536 0.84264 1.90521 1.81567 1.45864
1.32052 1.41915 1.06174 1.51084 1.22605 1.19037 0.81850 1.35910
1.09312 0.91827 1.26046 0.94607 0.98165 1.01836 1.69780 1.02318
1.46564 1.37908 0.85453 0.79835 0.79036 0.77854 1.18094 1.19867
1.15594 1.22867 1.01976 0.95423 0.90443 1.22386 0.80161 0.96999
0.97728 0.87090 1.22218 1.01789 0.96385 1.02245 1.88025 1.21696
1.78418 1.43671 0.92364 0.91705 0.89222 0.88450 0.94616 0.94487
0.89575 0.89801 0.90508 0.92511 0.92089 0.75341 0.75230 0.88151
0.88041 0.77216 0.90938 0.94759 0.88335 0.92556 0.90831 0.91745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.26 9.57 71.98 0.69 -0.57 16
2 C 0.08 0.99 3.03 30.63 0.09 1.08 16
3 H 0.07 0.83 6.49 -2.39 -0.02 0.81 16
4 C 0.02 0.28 4.93 86.31 0.43 0.70 16
5 N -0.54 -6.24 4.10 -895.22 -3.67 -9.91 16
6 C 0.06 0.66 4.96 86.31 0.43 1.09 16
7 C -0.11 -1.22 5.26 30.60 0.16 -1.06 16
8 C 0.14 2.37 5.67 86.38 0.49 2.86 16
9 N -0.73 -14.77 5.56 -478.55 -2.66 -17.43 16
10 C 0.70 20.44 8.57 179.05 1.53 21.98 16
11 O -0.63 -22.57 16.34 -3.98 -0.07 -22.64 16
12 N -0.73 -21.98 5.53 -482.31 -2.67 -24.65 16
13 C 0.14 4.52 6.15 85.63 0.53 5.04 16
14 C 0.45 19.25 7.85 87.65 0.69 19.94 16
15 O -0.61 -31.26 15.24 -3.06 -0.05 -31.31 16
16 N -0.58 -26.38 5.09 -306.99 -1.56 -27.95 16
17 C -0.33 -18.76 10.16 84.04 0.85 -17.91 16
18 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16
19 C -0.01 -0.35 5.50 84.93 0.47 0.12 16
20 N -0.93 -54.18 13.96 21.66 0.30 -53.87 16
21 Si 0.96 37.90 27.74 68.60 1.90 39.80 16
22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16
23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16
24 H -0.23 -7.85 6.52 99.48 0.65 -7.21 16
25 C 0.02 0.24 4.85 86.31 0.42 0.66 16
26 C 0.08 1.04 3.92 30.63 0.12 1.16 16
27 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16
28 C -0.17 -1.88 8.89 71.98 0.64 -1.24 16
29 O -0.40 -6.29 10.29 -148.98 -1.53 -7.83 16
30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16
31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16
32 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16
33 H 0.10 0.84 8.09 -2.39 -0.02 0.82 16
34 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16
35 H 0.04 0.43 8.12 -2.39 -0.02 0.41 16
36 H 0.09 0.86 8.04 -2.39 -0.02 0.84 16
37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
38 H 0.08 0.76 6.52 -2.38 -0.02 0.75 16
39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
41 H 0.41 6.28 8.49 -92.71 -0.79 5.49 16
42 H 0.41 12.22 7.45 -92.71 -0.69 11.53 16
43 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16
44 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16
45 H 0.39 15.02 5.76 -92.71 -0.53 14.49 16
46 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16
47 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16
48 H 0.10 0.96 6.38 -2.38 -0.02 0.94 16
49 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
50 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
51 H 0.06 0.82 6.13 -2.38 -0.01 0.80 16
Total: -1.00 -75.34 406.89 -3.58 -78.91
By element:
Atomic # 1 Polarization: 44.11 SS G_CDS: -1.11 Total: 43.00 kcal
Atomic # 6 Polarization: 26.33 SS G_CDS: 7.53 Total: 33.86 kcal
Atomic # 7 Polarization: -123.55 SS G_CDS: -10.26 Total: -133.81 kcal
Atomic # 8 Polarization: -60.12 SS G_CDS: -1.64 Total: -61.77 kcal
Atomic # 14 Polarization: 37.90 SS G_CDS: 1.90 Total: 39.80 kcal
Total: -75.34 -3.58 -78.91 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000343885214.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.496 kcal
(2) G-P(sol) polarization free energy of solvation -75.336 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.832 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.575 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.911 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds