Wall clock time and date at job start Sat Apr 11 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46590 * 2 1 4 4 C 1.52999 * 109.46973 * 119.99620 * 2 1 3 5 5 C 1.50699 * 109.47564 * 295.00318 * 4 2 1 6 6 O 1.21282 * 119.99794 * 359.97438 * 5 4 2 7 7 N 1.34770 * 120.00348 * 179.97438 * 5 4 2 8 8 C 1.47384 * 125.74269 * 179.97438 * 7 5 4 9 9 C 1.55413 * 106.74033 * 179.11012 * 8 7 5 10 10 H 1.08997 * 112.76280 * 146.41414 * 9 8 7 11 11 C 1.52913 * 106.56602 * 270.28495 * 9 8 7 12 12 C 1.51876 * 111.49502 * 169.08498 * 11 9 8 13 13 N 1.44343 * 113.48298 * 321.32889 * 12 11 9 14 14 C 1.36939 * 116.42822 * 187.47801 * 13 12 11 15 15 H 1.07997 * 120.00393 * 152.69864 * 14 13 12 16 16 C 1.38814 * 120.00010 * 332.70754 * 14 13 12 17 17 N 1.31623 * 119.99755 * 335.94424 * 16 14 13 18 18 Si 1.86794 * 120.00411 * 155.94315 * 16 14 13 19 19 H 1.48497 * 109.47029 * 89.99503 * 18 16 14 20 20 H 1.48496 * 109.47435 * 210.00147 * 18 16 14 21 21 H 1.48505 * 109.47190 * 329.99819 * 18 16 14 22 22 C 1.43984 * 127.15026 * 7.49841 * 13 12 11 23 23 C 1.49783 * 116.29588 * 2.85607 * 22 13 12 24 24 H 1.09001 * 108.75042 * 141.03166 * 23 22 13 25 25 C 1.47931 * 125.74259 * 0.02914 * 7 5 4 26 26 C 1.50695 * 109.47070 * 239.99950 * 2 1 3 27 27 C 1.38234 * 120.00057 * 299.72275 * 26 2 1 28 28 C 1.38234 * 120.00099 * 179.78784 * 27 26 2 29 29 C 1.38238 * 119.99865 * 0.44755 * 28 27 26 30 30 C 1.38233 * 120.00104 * 359.80876 * 29 28 27 31 31 C 1.38235 * 119.99903 * 359.97438 * 30 29 28 32 32 H 1.09010 * 109.47055 * 60.00169 * 1 2 3 33 33 H 1.09001 * 109.47440 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47716 * 300.00430 * 1 2 3 35 35 H 1.08995 * 109.46961 * 175.00044 * 4 2 1 36 36 H 1.09006 * 109.47023 * 55.00238 * 4 2 1 37 37 H 1.09004 * 110.00510 * 298.42653 * 8 7 5 38 38 H 1.08992 * 110.00370 * 59.78758 * 8 7 5 39 39 H 1.08994 * 109.04102 * 290.44280 * 11 9 8 40 40 H 1.08998 * 109.04130 * 49.31678 * 11 9 8 41 41 H 1.08998 * 108.95882 * 199.97672 * 12 11 9 42 42 H 1.09001 * 108.01674 * 82.01353 * 12 11 9 43 43 H 0.96999 * 120.00209 * 180.02562 * 17 16 14 44 44 H 1.09005 * 108.11517 * 241.07901 * 22 13 12 45 45 H 1.08994 * 108.11205 * 124.62906 * 22 13 12 46 46 H 1.08998 * 110.56515 * 274.09838 * 25 7 5 47 47 H 1.09005 * 110.56752 * 36.95238 * 25 7 5 48 48 H 1.08000 * 120.00013 * 0.02562 * 27 26 2 49 49 H 1.07998 * 120.00238 * 180.27661 * 28 27 26 50 50 H 1.07997 * 120.00224 * 179.82950 * 29 28 27 51 51 H 1.07999 * 120.00317 * 180.02562 * 30 29 28 52 52 H 1.07995 * 120.00404 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0874 2.3633 7 7 1.9843 -0.3918 3.7002 8 6 1.6626 0.2652 4.9797 9 6 2.2456 -0.6353 6.1042 10 1 2.5978 -0.0632 6.9626 11 6 1.1482 -1.6327 6.4771 12 6 1.6804 -2.7358 7.3752 13 7 3.0074 -3.1778 7.0186 14 6 3.4839 -4.2751 7.6850 15 1 4.2150 -4.9166 7.2156 16 6 3.0270 -4.5631 8.9637 17 7 2.5362 -3.6033 9.7189 18 14 3.1085 -6.3128 9.6128 19 1 4.4086 -6.5265 10.2977 20 1 1.9995 -6.5362 10.5747 21 1 2.9822 -7.2668 8.4817 22 6 3.8854 -2.5916 6.0395 23 6 3.3886 -1.3526 5.3601 24 1 4.2234 -0.6628 5.2353 25 6 2.7481 -1.6263 3.9850 26 6 2.0323 -0.7104 -1.2304 27 6 1.7031 -2.0355 -1.4463 28 6 2.1602 -2.6859 -2.5771 29 6 2.9542 -2.0138 -3.4875 30 6 3.2878 -0.6903 -3.2691 31 6 2.8270 -0.0386 -2.1404 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 3.1262 -0.7994 1.2056 36 1 1.6053 -1.7198 1.2952 37 1 2.1217 1.2531 5.0174 38 1 0.5821 0.3511 5.0934 39 1 0.3422 -1.1018 6.9835 40 1 0.7563 -2.0869 5.5670 41 1 1.0025 -3.5880 7.3291 42 1 1.6993 -2.3583 8.3976 43 1 2.2173 -3.8044 10.6126 44 1 4.0870 -3.3405 5.2736 45 1 4.8293 -2.3540 6.5299 46 1 2.0803 -2.4861 4.0379 47 1 3.5173 -1.7837 3.2288 48 1 1.0855 -2.5615 -0.7333 49 1 1.8993 -3.7199 -2.7480 50 1 3.3137 -2.5227 -4.3697 51 1 3.9078 -0.1651 -3.9805 52 1 3.0879 0.9953 -1.9694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088191007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:46:23 Heat of formation + Delta-G solvation = 7.458862 kcal Electronic energy + Delta-G solvation = -30082.665554 eV Core-core repulsion = 26240.024177 eV Total energy + Delta-G solvation = -3842.641377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.51959 -39.66315 -38.45043 -35.74798 -35.06906 -32.68432 -31.60185 -31.14780 -30.44806 -29.93939 -28.47328 -27.31207 -25.47592 -24.01692 -23.26400 -22.73566 -22.17226 -21.51256 -20.39277 -18.97385 -17.85823 -17.40076 -17.15016 -16.57585 -16.08130 -15.50065 -15.27082 -15.19227 -14.81066 -14.54601 -14.10151 -13.91061 -13.79159 -13.66090 -13.48866 -13.37209 -13.08647 -12.99102 -12.74625 -12.62314 -12.37524 -12.23168 -11.86725 -11.78317 -11.53834 -11.37047 -11.24557 -11.11608 -10.99661 -10.84079 -10.76256 -10.52757 -10.28931 -10.24940 -9.86487 -9.72212 -9.60767 -9.57326 -9.15006 -8.92610 -8.52291 -8.49914 -6.63413 -5.64497 -3.29718 1.12038 1.17059 2.67895 3.03017 3.35883 3.43717 3.47016 3.56203 4.32118 4.47652 4.51495 4.68741 4.74808 4.77329 4.81168 4.89705 4.91020 5.04599 5.10603 5.26344 5.28002 5.30868 5.31787 5.38433 5.47276 5.51799 5.54459 5.59953 5.67806 5.76395 5.79765 5.84717 5.88263 5.90704 5.99745 6.04987 6.14136 6.16999 6.22382 6.27782 6.30382 6.38395 6.45732 6.51493 6.56121 6.64275 6.77409 6.77696 6.84262 7.28430 7.60604 7.79407 7.90955 8.21668 8.51092 9.26931 9.96655 10.26197 11.21518 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.002359 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.920459 B =11867.315541 C =12980.733757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 H 0.085 0.915 4 C -0.129 4.129 5 C 0.528 3.472 6 O -0.546 6.546 7 N -0.616 5.616 8 C 0.109 3.891 9 C -0.081 4.081 10 H 0.098 0.902 11 C -0.122 4.122 12 C 0.156 3.844 13 N -0.585 5.585 14 C -0.269 4.269 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.889 5.889 18 Si 0.898 3.102 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.176 3.824 23 C -0.098 4.098 24 H 0.074 0.926 25 C 0.106 3.894 26 C -0.074 4.074 27 C -0.114 4.114 28 C -0.118 4.118 29 C -0.127 4.127 30 C -0.120 4.120 31 C -0.117 4.117 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.019 0.981 42 H 0.079 0.921 43 H 0.253 0.747 44 H 0.014 0.986 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 6.297 -21.769 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.054 4.054 3 H 0.104 0.896 4 C -0.169 4.169 5 C 0.317 3.683 6 O -0.425 6.425 7 N -0.350 5.350 8 C -0.013 4.013 9 C -0.100 4.100 10 H 0.116 0.884 11 C -0.160 4.160 12 C 0.031 3.969 13 N -0.309 5.309 14 C -0.399 4.399 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.533 5.533 18 Si 0.728 3.272 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.049 3.951 23 C -0.117 4.117 24 H 0.092 0.908 25 C -0.016 4.016 26 C -0.074 4.074 27 C -0.132 4.132 28 C -0.136 4.136 29 C -0.145 4.145 30 C -0.138 4.138 31 C -0.135 4.135 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.042 0.958 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.219 6.933 -21.788 22.897 hybrid contribution 0.108 -1.065 0.400 1.143 sum -1.110 5.868 -21.389 22.207 Atomic orbital electron populations 1.21961 0.93645 1.01764 1.03199 1.19885 0.96800 0.99058 0.89631 0.89616 1.21729 1.03003 1.00207 0.91956 1.20257 0.79219 0.85447 0.83392 1.90651 1.40778 1.24958 1.86101 1.48776 1.55236 1.25439 1.05564 1.22408 1.00309 0.96120 0.82496 1.22057 0.95728 0.95937 0.96271 0.88424 1.21715 0.96808 0.97299 1.00142 1.20258 0.84356 0.93230 0.99059 1.42653 1.12061 1.33259 1.42963 1.19096 1.24245 1.00599 0.95932 0.91710 1.24979 1.01468 0.97567 0.95351 1.69995 1.45095 1.30087 1.08100 0.86372 0.77302 0.85183 0.78391 1.21393 1.21552 1.20514 1.19260 0.93157 0.90970 0.91684 1.21586 0.97573 0.98897 0.93680 0.90799 1.22515 0.94836 0.86949 0.97307 1.19924 0.97156 0.94208 0.96117 1.21048 1.00120 0.94330 0.97692 1.21162 0.98008 0.99916 0.94551 1.21144 0.98919 0.94923 0.99519 1.21138 1.00073 0.94981 0.97569 1.21103 0.97917 0.99966 0.94471 0.92836 0.93098 0.90172 0.88866 0.88807 0.91969 0.91425 0.92249 0.93549 0.96308 0.90338 0.93684 0.96852 0.95848 0.90549 0.90777 0.86037 0.86113 0.86298 0.86203 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.75 37.16 0.33 -1.26 16 2 C -0.03 -0.36 2.21 -91.78 -0.20 -0.56 16 3 H 0.09 0.95 7.69 -51.93 -0.40 0.55 16 4 C -0.13 -1.36 3.93 -27.88 -0.11 -1.47 16 5 C 0.53 7.26 7.57 -10.99 -0.08 7.18 16 6 O -0.55 -9.01 14.30 5.56 0.08 -8.93 16 7 N -0.62 -8.57 3.34 -169.61 -0.57 -9.14 16 8 C 0.11 1.57 6.25 -2.28 -0.01 1.56 16 9 C -0.08 -1.29 3.60 -88.81 -0.32 -1.61 16 10 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 11 C -0.12 -2.16 4.83 -27.35 -0.13 -2.30 16 12 C 0.16 3.57 5.09 -5.76 -0.03 3.54 16 13 N -0.58 -13.95 3.23 -179.51 -0.58 -14.53 16 14 C -0.27 -7.17 9.27 -15.06 -0.14 -7.31 16 15 H 0.07 1.71 7.94 -52.49 -0.42 1.29 16 16 C 0.01 0.17 4.95 -17.43 -0.09 0.08 16 17 N -0.89 -25.02 10.89 55.49 0.60 -24.42 16 18 Si 0.90 21.24 29.62 -169.99 -5.03 16.20 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.18 3.44 5.75 -6.97 -0.04 3.40 16 23 C -0.10 -1.53 2.83 -91.04 -0.26 -1.79 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 C 0.11 1.43 5.47 -2.66 -0.01 1.42 16 26 C -0.07 -0.71 4.78 -104.63 -0.50 -1.21 16 27 C -0.11 -1.04 8.76 -39.58 -0.35 -1.38 16 28 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 29 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 30 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 31 C -0.12 -1.05 9.67 -39.58 -0.38 -1.43 16 32 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.05 0.49 7.40 -51.93 -0.38 0.11 16 34 H 0.08 1.03 5.95 -51.93 -0.31 0.72 16 35 H 0.09 0.89 7.87 -51.93 -0.41 0.49 16 36 H 0.09 0.90 7.56 -51.93 -0.39 0.51 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.00 7.78 -51.93 -0.40 0.59 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.80 6.71 -51.93 -0.35 0.46 16 41 H 0.02 0.47 8.11 -51.93 -0.42 0.05 16 42 H 0.08 2.06 5.79 -51.93 -0.30 1.76 16 43 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.01 0.26 7.81 -51.93 -0.41 -0.14 16 45 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 46 H 0.08 1.11 7.24 -51.93 -0.38 0.73 16 47 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 48 H 0.12 1.00 7.16 -52.49 -0.38 0.62 16 49 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 50 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 51 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 52 H 0.12 0.94 7.95 -52.49 -0.42 0.53 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -30.17 398.34 -11.71 -41.88 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.69 Total: 0.25 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.53 Total: -7.32 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.54 Total: -48.09 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.17 -11.71 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088191007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.343 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds