Wall clock time and date at job start Sat Apr 11 2020 06:46:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.46590 * 2 1
4 4 C 1.52999 * 109.46973 * 119.99620 * 2 1 3
5 5 C 1.50699 * 109.47564 * 295.00318 * 4 2 1
6 6 O 1.21282 * 119.99794 * 359.97438 * 5 4 2
7 7 N 1.34770 * 120.00348 * 179.97438 * 5 4 2
8 8 C 1.47384 * 125.74269 * 179.97438 * 7 5 4
9 9 C 1.55413 * 106.74033 * 179.11012 * 8 7 5
10 10 H 1.08997 * 112.76280 * 146.41414 * 9 8 7
11 11 C 1.52913 * 106.56602 * 270.28495 * 9 8 7
12 12 C 1.51876 * 111.49502 * 169.08498 * 11 9 8
13 13 N 1.44343 * 113.48298 * 321.32889 * 12 11 9
14 14 C 1.36939 * 116.42822 * 187.47801 * 13 12 11
15 15 H 1.07997 * 120.00393 * 152.69864 * 14 13 12
16 16 C 1.38814 * 120.00010 * 332.70754 * 14 13 12
17 17 N 1.31623 * 119.99755 * 335.94424 * 16 14 13
18 18 Si 1.86794 * 120.00411 * 155.94315 * 16 14 13
19 19 H 1.48497 * 109.47029 * 89.99503 * 18 16 14
20 20 H 1.48496 * 109.47435 * 210.00147 * 18 16 14
21 21 H 1.48505 * 109.47190 * 329.99819 * 18 16 14
22 22 C 1.43984 * 127.15026 * 7.49841 * 13 12 11
23 23 C 1.49783 * 116.29588 * 2.85607 * 22 13 12
24 24 H 1.09001 * 108.75042 * 141.03166 * 23 22 13
25 25 C 1.47931 * 125.74259 * 0.02914 * 7 5 4
26 26 C 1.50695 * 109.47070 * 239.99950 * 2 1 3
27 27 C 1.38234 * 120.00057 * 299.72275 * 26 2 1
28 28 C 1.38234 * 120.00099 * 179.78784 * 27 26 2
29 29 C 1.38238 * 119.99865 * 0.44755 * 28 27 26
30 30 C 1.38233 * 120.00104 * 359.80876 * 29 28 27
31 31 C 1.38235 * 119.99903 * 359.97438 * 30 29 28
32 32 H 1.09010 * 109.47055 * 60.00169 * 1 2 3
33 33 H 1.09001 * 109.47440 * 179.97438 * 1 2 3
34 34 H 1.09001 * 109.47716 * 300.00430 * 1 2 3
35 35 H 1.08995 * 109.46961 * 175.00044 * 4 2 1
36 36 H 1.09006 * 109.47023 * 55.00238 * 4 2 1
37 37 H 1.09004 * 110.00510 * 298.42653 * 8 7 5
38 38 H 1.08992 * 110.00370 * 59.78758 * 8 7 5
39 39 H 1.08994 * 109.04102 * 290.44280 * 11 9 8
40 40 H 1.08998 * 109.04130 * 49.31678 * 11 9 8
41 41 H 1.08998 * 108.95882 * 199.97672 * 12 11 9
42 42 H 1.09001 * 108.01674 * 82.01353 * 12 11 9
43 43 H 0.96999 * 120.00209 * 180.02562 * 17 16 14
44 44 H 1.09005 * 108.11517 * 241.07901 * 22 13 12
45 45 H 1.08994 * 108.11205 * 124.62906 * 22 13 12
46 46 H 1.08998 * 110.56515 * 274.09838 * 25 7 5
47 47 H 1.09005 * 110.56752 * 36.95238 * 25 7 5
48 48 H 1.08000 * 120.00013 * 0.02562 * 27 26 2
49 49 H 1.07998 * 120.00238 * 180.27661 * 28 27 26
50 50 H 1.07997 * 120.00224 * 179.82950 * 29 28 27
51 51 H 1.07999 * 120.00317 * 180.02562 * 30 29 28
52 52 H 1.07995 * 120.00404 * 179.97438 * 31 30 29
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 1.6412 0.0571 2.4766
6 8 1.0116 1.0874 2.3633
7 7 1.9843 -0.3918 3.7002
8 6 1.6626 0.2652 4.9797
9 6 2.2456 -0.6353 6.1042
10 1 2.5978 -0.0632 6.9626
11 6 1.1482 -1.6327 6.4771
12 6 1.6804 -2.7358 7.3752
13 7 3.0074 -3.1778 7.0186
14 6 3.4839 -4.2751 7.6850
15 1 4.2150 -4.9166 7.2156
16 6 3.0270 -4.5631 8.9637
17 7 2.5362 -3.6033 9.7189
18 14 3.1085 -6.3128 9.6128
19 1 4.4086 -6.5265 10.2977
20 1 1.9995 -6.5362 10.5747
21 1 2.9822 -7.2668 8.4817
22 6 3.8854 -2.5916 6.0395
23 6 3.3886 -1.3526 5.3601
24 1 4.2234 -0.6628 5.2353
25 6 2.7481 -1.6263 3.9850
26 6 2.0323 -0.7104 -1.2304
27 6 1.7031 -2.0355 -1.4463
28 6 2.1602 -2.6859 -2.5771
29 6 2.9542 -2.0138 -3.4875
30 6 3.2878 -0.6903 -3.2691
31 6 2.8270 -0.0386 -2.1404
32 1 -0.3634 0.5139 -0.8901
33 1 -0.3634 -1.0277 -0.0005
34 1 -0.3634 0.5139 0.8899
35 1 3.1262 -0.7994 1.2056
36 1 1.6053 -1.7198 1.2952
37 1 2.1217 1.2531 5.0174
38 1 0.5821 0.3511 5.0934
39 1 0.3422 -1.1018 6.9835
40 1 0.7563 -2.0869 5.5670
41 1 1.0025 -3.5880 7.3291
42 1 1.6993 -2.3583 8.3976
43 1 2.2173 -3.8044 10.6126
44 1 4.0870 -3.3405 5.2736
45 1 4.8293 -2.3540 6.5299
46 1 2.0803 -2.4861 4.0379
47 1 3.5173 -1.7837 3.2288
48 1 1.0855 -2.5615 -0.7333
49 1 1.8993 -3.7199 -2.7480
50 1 3.3137 -2.5227 -4.3697
51 1 3.9078 -0.1651 -3.9805
52 1 3.0879 0.9953 -1.9694
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088191007.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:22
Heat of formation + Delta-G solvation = -6.627720 kcal
Electronic energy + Delta-G solvation = -30083.276394 eV
Core-core repulsion = 26240.024177 eV
Total energy + Delta-G solvation = -3843.252217 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.65141 -40.49617 -39.58924 -37.31294 -35.92002 -34.25967 -33.15647 -32.03298
-31.74648 -30.77948 -29.63793 -28.41032 -27.06249 -25.27850 -24.36109 -23.63616
-23.39369 -22.93082 -21.20032 -20.00354 -19.35361 -18.89930 -18.25364 -17.45174
-17.20863 -16.88242 -16.44081 -16.23850 -15.91602 -15.65763 -15.60465 -15.37538
-14.84372 -14.77627 -14.63689 -14.37847 -14.21018 -14.08829 -13.87001 -13.72199
-13.49552 -13.29292 -13.24234 -12.94083 -12.84545 -12.69814 -12.48192 -12.22941
-12.20403 -12.14813 -12.03649 -11.80734 -11.71242 -11.55016 -11.45262 -11.28381
-11.19599 -10.76943 -10.49824 -9.76511 -9.66210 -9.56883 -8.63346 -7.66534
-5.37002 0.48842 0.55535 1.46656 1.49680 1.58893 1.62487 1.96202
2.52998 2.93036 3.24440 3.33009 3.49149 3.69338 3.76068 3.79044
3.83946 4.03309 4.12221 4.14516 4.20268 4.22879 4.34949 4.35524
4.45724 4.49498 4.57243 4.63194 4.64917 4.66547 4.67535 4.70574
4.77133 4.84774 4.94189 5.00250 5.02369 5.06293 5.08645 5.16880
5.18781 5.23599 5.25742 5.31012 5.34950 5.39297 5.44807 5.64566
5.68765 5.71564 5.78813 5.97044 6.17438 6.46685 6.52376 7.14704
7.24405 8.08098 8.26356 9.14592
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.015754 B = 0.002359 C = 0.002157
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1776.920459 B =11867.315541 C =12980.733757
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.029 4.029
3 H 0.074 0.926
4 C -0.122 4.122
5 C 0.526 3.474
6 O -0.576 6.576
7 N -0.617 5.617
8 C 0.117 3.883
9 C -0.078 4.078
10 H 0.091 0.909
11 C -0.109 4.109
12 C 0.164 3.836
13 N -0.597 5.597
14 C -0.282 4.282
15 H 0.065 0.935
16 C -0.045 4.045
17 N -0.917 5.917
18 Si 0.958 3.042
19 H -0.283 1.283
20 H -0.293 1.293
21 H -0.273 1.273
22 C 0.174 3.826
23 C -0.095 4.095
24 H 0.093 0.907
25 C 0.116 3.884
26 C -0.083 4.083
27 C -0.124 4.124
28 C -0.127 4.127
29 C -0.132 4.132
30 C -0.126 4.126
31 C -0.129 4.129
32 H 0.055 0.945
33 H 0.059 0.941
34 H 0.056 0.944
35 H 0.109 0.891
36 H 0.108 0.892
37 H 0.069 0.931
38 H 0.064 0.936
39 H 0.069 0.931
40 H 0.054 0.946
41 H -0.010 1.010
42 H 0.045 0.955
43 H 0.249 0.751
44 H 0.025 0.975
45 H 0.010 0.990
46 H 0.069 0.931
47 H 0.104 0.896
48 H 0.128 0.872
49 H 0.137 0.863
50 H 0.138 0.862
51 H 0.138 0.862
52 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.013 5.839 -24.222 24.915
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.047 4.047
3 H 0.093 0.907
4 C -0.161 4.161
5 C 0.317 3.683
6 O -0.456 6.456
7 N -0.350 5.350
8 C -0.005 4.005
9 C -0.097 4.097
10 H 0.110 0.890
11 C -0.147 4.147
12 C 0.039 3.961
13 N -0.321 5.321
14 C -0.412 4.412
15 H 0.083 0.917
16 C -0.242 4.242
17 N -0.563 5.563
18 Si 0.786 3.214
19 H -0.210 1.210
20 H -0.220 1.220
21 H -0.198 1.198
22 C 0.048 3.952
23 C -0.114 4.114
24 H 0.111 0.889
25 C -0.006 4.006
26 C -0.083 4.083
27 C -0.142 4.142
28 C -0.145 4.145
29 C -0.150 4.150
30 C -0.144 4.144
31 C -0.147 4.147
32 H 0.074 0.926
33 H 0.078 0.922
34 H 0.075 0.925
35 H 0.127 0.873
36 H 0.126 0.874
37 H 0.087 0.913
38 H 0.083 0.917
39 H 0.088 0.912
40 H 0.072 0.928
41 H 0.008 0.992
42 H 0.062 0.938
43 H 0.058 0.942
44 H 0.043 0.957
45 H 0.028 0.972
46 H 0.087 0.913
47 H 0.123 0.877
48 H 0.146 0.854
49 H 0.155 0.845
50 H 0.156 0.844
51 H 0.156 0.844
52 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -0.427 6.470 -24.267 25.118
hybrid contribution -0.108 -0.921 1.123 1.456
sum -0.534 5.549 -23.144 23.806
Atomic orbital electron populations
1.21895 0.94189 1.01964 1.02106 1.19773 0.96283 0.98584 0.90100
0.90748 1.21752 1.04003 1.00177 0.90215 1.20815 0.78404 0.85166
0.83899 1.90649 1.42085 1.26444 1.86470 1.48813 1.55293 1.25463
1.05471 1.22236 1.00041 0.95996 0.82251 1.21969 0.95310 0.95691
0.96773 0.89037 1.21554 0.97592 0.96225 0.99354 1.19996 0.83917
0.93527 0.98681 1.42891 1.12799 1.33137 1.43246 1.19427 1.23932
1.01738 0.96118 0.91732 1.25700 1.01860 1.00757 0.95845 1.70160
1.46329 1.31605 1.08174 0.85424 0.77003 0.81207 0.77718 1.21009
1.21976 1.19786 1.19353 0.91949 0.92893 0.90975 1.21498 0.98240
0.97240 0.94466 0.88871 1.22439 0.95192 0.86313 0.96676 1.19862
0.97931 0.94528 0.96015 1.21194 1.00418 0.94259 0.98288 1.21432
0.97871 1.00805 0.94344 1.21461 0.98474 0.95003 1.00069 1.21413
1.00061 0.95295 0.97600 1.21291 0.98092 1.00478 0.94830 0.92595
0.92228 0.92500 0.87279 0.87433 0.91293 0.91750 0.91234 0.92756
0.99168 0.93782 0.94157 0.95677 0.97245 0.91320 0.87737 0.85416
0.84540 0.84367 0.84418 0.85504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.94 8.75 71.98 0.63 -2.31 16
2 C -0.03 -0.54 2.21 -11.54 -0.03 -0.57 16
3 H 0.07 1.58 7.69 -2.39 -0.02 1.56 16
4 C -0.12 -2.27 3.93 29.85 0.12 -2.15 16
5 C 0.53 13.46 7.57 87.66 0.66 14.12 16
6 O -0.58 -18.42 14.30 -3.04 -0.04 -18.46 16
7 N -0.62 -15.70 3.34 -808.91 -2.70 -18.40 16
8 C 0.12 3.19 6.25 87.04 0.54 3.73 16
9 C -0.08 -2.40 3.60 -9.62 -0.03 -2.43 16
10 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16
11 C -0.11 -3.85 4.83 30.20 0.15 -3.71 16
12 C 0.16 7.70 5.09 86.41 0.44 8.14 16
13 N -0.60 -28.67 3.23 -721.85 -2.33 -31.00 16
14 C -0.28 -15.17 9.27 84.03 0.78 -14.39 16
15 H 0.06 3.41 7.94 -2.91 -0.02 3.38 16
16 C -0.04 -2.46 4.95 84.86 0.42 -2.04 16
17 N -0.92 -53.10 10.89 21.65 0.24 -52.87 16
18 Si 0.96 44.19 29.62 68.60 2.03 46.22 16
19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16
20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16
21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16
22 C 0.17 6.64 5.75 85.81 0.49 7.14 16
23 C -0.10 -2.78 2.83 -11.06 -0.03 -2.81 16
24 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16
25 C 0.12 2.78 5.47 86.49 0.47 3.26 16
26 C -0.08 -1.44 4.78 -19.87 -0.09 -1.54 16
27 C -0.12 -1.98 8.76 22.27 0.20 -1.79 16
28 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16
29 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16
30 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16
31 C -0.13 -2.09 9.67 22.27 0.22 -1.88 16
32 H 0.05 1.07 8.14 -2.38 -0.02 1.06 16
33 H 0.06 1.07 7.40 -2.39 -0.02 1.06 16
34 H 0.06 1.44 5.95 -2.39 -0.01 1.42 16
35 H 0.11 1.72 7.87 -2.39 -0.02 1.70 16
36 H 0.11 1.74 7.56 -2.38 -0.02 1.72 16
37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
38 H 0.06 1.81 7.78 -2.39 -0.02 1.79 16
39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
40 H 0.05 1.83 6.71 -2.39 -0.02 1.81 16
41 H -0.01 -0.50 8.11 -2.39 -0.02 -0.52 16
42 H 0.04 2.42 5.79 -2.39 -0.01 2.41 16
43 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16
44 H 0.03 0.92 7.81 -2.38 -0.02 0.90 16
45 H 0.01 0.39 8.13 -2.39 -0.02 0.37 16
46 H 0.07 1.80 7.24 -2.39 -0.02 1.79 16
47 H 0.10 1.92 7.51 -2.38 -0.02 1.91 16
48 H 0.13 1.80 7.16 -2.91 -0.02 1.78 16
49 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16
50 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16
51 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16
52 H 0.13 1.80 7.95 -2.91 -0.02 1.78 16
Total: -1.00 -66.10 398.34 3.68 -62.42
By element:
Atomic # 1 Polarization: 15.13 SS G_CDS: 0.89 Total: 16.02 kcal
Atomic # 6 Polarization: -9.52 SS G_CDS: 5.60 Total: -3.92 kcal
Atomic # 7 Polarization: -97.48 SS G_CDS: -4.80 Total: -102.27 kcal
Atomic # 8 Polarization: -18.42 SS G_CDS: -0.04 Total: -18.46 kcal
Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal
Total: -66.10 3.68 -62.42 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088191007.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.794 kcal
(2) G-P(sol) polarization free energy of solvation -66.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.307 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds