Wall clock time and date at job start Sat Apr 11 2020 06:47:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09004 * 109.46956 * 2 1
4 4 N 1.46501 * 109.47089 * 240.00283 * 2 1 3
5 5 C 1.36937 * 120.00090 * 84.99465 * 4 2 1
6 6 H 1.08001 * 119.99968 * 0.02562 * 5 4 2
7 7 C 1.38813 * 120.00052 * 180.02562 * 5 4 2
8 8 N 1.31621 * 119.99927 * 0.02562 * 7 5 4
9 9 Si 1.86800 * 120.00255 * 180.02562 * 7 5 4
10 10 H 1.48505 * 109.46714 * 0.02562 * 9 7 5
11 11 H 1.48505 * 109.47003 * 119.99545 * 9 7 5
12 12 H 1.48495 * 109.47282 * 239.99899 * 9 7 5
13 13 C 1.52996 * 109.47453 * 120.00154 * 2 1 3
14 14 H 1.09002 * 110.88885 * 179.30475 * 13 2 1
15 15 C 1.55152 * 111.00660 * 55.41662 * 13 2 1
16 16 C 1.54320 * 102.94583 * 206.42579 * 15 13 2
17 17 N 1.47019 * 107.26864 * 22.19458 * 16 15 13
18 18 C 1.34784 * 125.64511 * 181.09787 * 17 16 15
19 19 O 1.21284 * 119.99814 * 174.69933 * 18 17 16
20 20 C 1.50701 * 120.00188 * 354.70038 * 18 17 16
21 21 C 1.52991 * 115.55167 * 293.06139 * 20 18 17
22 22 C 1.50705 * 109.47158 * 295.10212 * 21 20 18
23 23 C 1.38230 * 119.99493 * 273.64685 * 22 21 20
24 24 C 1.38242 * 119.99758 * 179.78555 * 23 22 21
25 25 C 1.38239 * 119.99814 * 0.44693 * 24 23 22
26 26 C 1.38235 * 119.99754 * 359.80644 * 25 24 23
27 27 C 1.38233 * 120.00350 * 359.97438 * 26 25 24
28 28 C 1.52996 * 117.49812 * 147.38710 * 20 18 17
29 29 C 1.53003 * 117.49636 * 78.73001 * 20 18 17
30 30 C 1.47464 * 108.72564 * 1.02513 * 17 16 15
31 31 H 1.08993 * 109.47378 * 60.00324 * 1 2 3
32 32 H 1.09000 * 109.47208 * 299.99718 * 1 2 3
33 33 H 1.09004 * 109.46956 * 179.97438 * 1 2 3
34 34 H 0.96997 * 119.99658 * 264.99770 * 4 2 1
35 35 H 0.97001 * 120.00108 * 180.02562 * 8 7 5
36 36 H 1.09002 * 110.71971 * 324.79057 * 15 13 2
37 37 H 1.09003 * 110.72139 * 87.88085 * 15 13 2
38 38 H 1.09001 * 109.88351 * 141.61148 * 16 15 13
39 39 H 1.09005 * 109.88185 * 262.77535 * 16 15 13
40 40 H 1.09005 * 109.47413 * 55.09615 * 21 20 18
41 41 H 1.08995 * 109.47730 * 175.09815 * 21 20 18
42 42 H 1.07993 * 120.00825 * 359.97438 * 23 22 21
43 43 H 1.07990 * 120.00363 * 180.27100 * 24 23 22
44 44 H 1.08001 * 120.00070 * 179.83729 * 25 24 23
45 45 H 1.08006 * 119.99872 * 180.02562 * 26 25 24
46 46 H 1.08001 * 120.00186 * 179.97438 * 27 26 25
47 47 H 1.09007 * 117.49955 * 0.02562 * 28 20 18
48 48 H 1.09006 * 117.49693 * 145.01732 * 28 20 18
49 49 H 1.08999 * 117.50019 * 214.97869 * 29 20 18
50 50 H 1.08994 * 117.49923 * 0.02562 * 29 20 18
51 51 H 1.08998 * 110.40508 * 217.08887 * 30 17 16
52 52 H 1.08999 * 110.34680 * 94.74601 * 30 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1490 -0.0074 -2.3758
6 1 1.8925 1.0406 -2.4242
7 6 2.6112 -0.6619 -3.5094
8 7 2.9234 -1.9392 -3.4505
9 14 2.7902 0.2701 -5.1183
10 1 2.3773 1.6829 -4.9205
11 1 4.2071 0.2264 -5.5607
12 1 1.9291 -0.3576 -6.1525
13 6 2.0401 -0.7212 1.2492
14 1 3.1297 -0.7454 1.2663
15 6 1.4504 -2.1532 1.3444
16 6 1.4770 -2.4379 2.8608
17 7 1.5093 -1.1388 3.5483
18 6 1.5598 -0.9574 4.8829
19 8 1.6796 0.1601 5.3389
20 6 1.4674 -2.1430 5.8086
21 6 0.1208 -2.8691 5.8186
22 6 -0.9424 -1.9482 6.3595
23 6 -1.1570 -1.8656 7.7225
24 6 -2.1293 -1.0176 8.2191
25 6 -2.8932 -0.2590 7.3519
26 6 -2.6821 -0.3456 5.9885
27 6 -1.7068 -1.1902 5.4922
28 6 2.2418 -2.0726 7.1262
29 6 2.7277 -2.9891 6.0006
30 6 1.4790 -0.0667 2.5362
31 1 -0.3634 0.5137 -0.8899
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 -1.0277 -0.0005
34 1 2.2490 -1.6317 -1.1526
35 1 3.2467 -2.3964 -4.2425
36 1 0.4285 -2.1754 0.9657
37 1 2.0757 -2.8644 0.8046
38 1 0.5820 -2.9885 3.1504
39 1 2.3672 -3.0137 3.1143
40 1 -0.1391 -3.1668 4.8027
41 1 0.1901 -3.7547 6.4502
42 1 -0.5631 -2.4613 8.3998
43 1 -2.2940 -0.9497 9.2842
44 1 -3.6546 0.4015 7.7396
45 1 -3.2787 0.2473 5.3109
46 1 -1.5422 -1.2582 4.4270
47 1 2.8178 -1.1684 7.3238
48 1 1.7920 -2.5438 8.0002
49 1 2.5973 -4.0630 6.1345
50 1 3.6236 -2.6880 5.4578
51 1 2.1114 0.7656 2.8452
52 1 0.4559 0.2727 2.3742
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001724534371.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:53
Heat of formation + Delta-G solvation = 10.001570 kcal
Electronic energy + Delta-G solvation = -30416.763307 eV
Core-core repulsion = 26574.232190 eV
Total energy + Delta-G solvation = -3842.531117 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.63747 -40.14837 -39.34651 -37.61108 -36.72125 -34.27080 -33.21807 -31.84144
-31.71222 -30.61703 -29.16021 -28.07751 -26.49665 -25.27479 -23.68310 -23.47915
-23.20049 -23.02254 -22.01574 -20.38039 -19.59872 -19.20087 -18.02830 -17.56347
-17.35826 -16.78256 -16.55672 -16.13318 -16.00812 -15.79625 -15.44081 -15.29229
-15.16836 -14.63382 -14.50206 -14.24940 -14.14908 -14.04515 -14.01822 -13.64381
-13.43704 -13.11821 -13.06670 -12.96025 -12.78667 -12.58459 -12.41838 -12.33547
-12.22797 -12.15073 -12.07087 -11.87173 -11.57409 -11.52803 -11.47837 -11.34482
-10.99604 -10.89984 -10.72699 -9.78408 -9.64609 -9.55227 -8.98382 -7.92496
-5.19193 0.47137 0.53539 1.47573 1.48457 1.55744 1.57603 1.92251
2.57093 2.70412 2.94107 3.35190 3.41419 3.61998 3.64696 3.73382
3.82953 3.90394 3.97109 4.04723 4.14806 4.18831 4.23880 4.30967
4.32027 4.36228 4.43373 4.55137 4.58602 4.65399 4.67829 4.72144
4.75662 4.78988 4.81163 4.88609 4.94414 4.99453 5.08834 5.11195
5.12937 5.18862 5.21213 5.22263 5.25265 5.34868 5.37172 5.54969
5.59580 5.65039 5.66971 5.72939 6.16471 6.30800 6.53447 7.13739
7.37859 8.13797 8.38515 9.30969
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.018291 B = 0.002464 C = 0.002303
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1530.416790 B =11361.796083 C =12152.980690
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.180 3.820
3 H 0.037 0.963
4 N -0.731 5.731
5 C -0.234 4.234
6 H 0.071 0.929
7 C -0.074 4.074
8 N -0.966 5.966
9 Si 0.965 3.035
10 H -0.270 1.270
11 H -0.295 1.295
12 H -0.294 1.294
13 C -0.093 4.093
14 H 0.068 0.932
15 C -0.124 4.124
16 C 0.107 3.893
17 N -0.609 5.609
18 C 0.561 3.439
19 O -0.587 6.587
20 C -0.156 4.156
21 C -0.035 4.035
22 C -0.090 4.090
23 C -0.118 4.118
24 C -0.128 4.128
25 C -0.135 4.135
26 C -0.136 4.136
27 C -0.131 4.131
28 C -0.145 4.145
29 C -0.140 4.140
30 C 0.114 3.886
31 H 0.034 0.966
32 H 0.065 0.935
33 H 0.057 0.943
34 H 0.377 0.623
35 H 0.250 0.750
36 H 0.085 0.915
37 H 0.079 0.921
38 H 0.091 0.909
39 H 0.083 0.917
40 H 0.085 0.915
41 H 0.113 0.887
42 H 0.142 0.858
43 H 0.142 0.858
44 H 0.136 0.864
45 H 0.125 0.875
46 H 0.110 0.890
47 H 0.078 0.922
48 H 0.128 0.872
49 H 0.138 0.862
50 H 0.088 0.912
51 H 0.058 0.942
52 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.449 -5.819 25.900 27.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.071 3.929
3 H 0.055 0.945
4 N -0.372 5.372
5 C -0.366 4.366
6 H 0.089 0.911
7 C -0.266 4.266
8 N -0.617 5.617
9 Si 0.795 3.205
10 H -0.194 1.194
11 H -0.223 1.223
12 H -0.221 1.221
13 C -0.113 4.113
14 H 0.087 0.913
15 C -0.162 4.162
16 C -0.014 4.014
17 N -0.341 5.341
18 C 0.351 3.649
19 O -0.467 6.467
20 C -0.159 4.159
21 C -0.072 4.072
22 C -0.090 4.090
23 C -0.135 4.135
24 C -0.146 4.146
25 C -0.153 4.153
26 C -0.154 4.154
27 C -0.150 4.150
28 C -0.182 4.182
29 C -0.176 4.176
30 C -0.009 4.009
31 H 0.053 0.947
32 H 0.084 0.916
33 H 0.076 0.924
34 H 0.209 0.791
35 H 0.059 0.941
36 H 0.103 0.897
37 H 0.098 0.902
38 H 0.109 0.891
39 H 0.101 0.899
40 H 0.104 0.896
41 H 0.131 0.869
42 H 0.160 0.840
43 H 0.160 0.840
44 H 0.154 0.846
45 H 0.143 0.857
46 H 0.129 0.871
47 H 0.097 0.903
48 H 0.146 0.854
49 H 0.156 0.844
50 H 0.107 0.893
51 H 0.077 0.923
52 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -8.385 -5.066 26.094 27.873
hybrid contribution 0.356 0.673 -1.584 1.758
sum -8.030 -4.392 24.510 26.163
Atomic orbital electron populations
1.22437 0.97557 1.01506 1.00330 1.20187 0.92935 0.94575 0.85169
0.94537 1.42521 1.78426 1.10451 1.05803 1.19604 1.34567 0.94039
0.88398 0.91116 1.25435 1.03211 0.96885 1.01066 1.69793 1.52801
1.09936 1.29216 0.85184 0.76705 0.78174 0.80388 1.19446 1.22285
1.22129 1.22409 0.99693 0.96186 0.92967 0.91347 1.22717 1.02721
0.95907 0.94823 1.22234 1.03349 0.84478 0.91369 1.48504 1.72110
1.08917 1.04599 1.19760 0.74556 0.89559 0.80976 1.90664 1.51992
1.27638 1.76431 1.21269 0.96153 0.98166 1.00283 1.20190 0.87670
0.96153 1.03150 1.19985 0.96719 0.98105 0.94141 1.21300 0.98199
0.99428 0.94610 1.21472 0.95962 0.96391 1.00750 1.21421 1.00515
1.00025 0.93342 1.21361 0.98562 0.98985 0.96448 1.21178 0.96761
0.97452 0.99560 1.23065 1.01465 1.01576 0.92116 1.23260 0.94314
0.99306 1.00770 1.22283 1.01390 0.90564 0.86664 0.94669 0.91612
0.92406 0.79063 0.94120 0.89691 0.90234 0.89078 0.89911 0.89627
0.86863 0.83975 0.84003 0.84630 0.85667 0.87140 0.90311 0.85430
0.84446 0.89309 0.92338 0.90272
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.29 8.85 71.98 0.64 -4.66 16
2 C 0.18 6.77 2.84 44.99 0.13 6.90 16
3 H 0.04 1.46 8.08 -2.38 -0.02 1.44 16
4 N -0.73 -35.11 5.07 -322.94 -1.64 -36.75 16
5 C -0.23 -12.71 9.93 84.03 0.83 -11.88 16
6 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16
7 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16
8 N -0.97 -57.65 13.06 21.65 0.28 -57.36 16
9 Si 0.97 45.85 29.55 68.60 2.03 47.87 16
10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16
11 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16
12 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16
13 C -0.09 -2.86 3.07 -9.40 -0.03 -2.89 16
14 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
15 C -0.12 -3.21 5.69 31.78 0.18 -3.03 16
16 C 0.11 2.18 6.33 86.73 0.55 2.73 16
17 N -0.61 -15.51 3.33 -811.68 -2.70 -18.21 16
18 C 0.56 15.38 6.57 87.66 0.58 15.96 16
19 O -0.59 -21.47 16.96 -3.04 -0.05 -21.52 16
20 C -0.16 -2.85 1.17 -52.93 -0.06 -2.91 16
21 C -0.03 -0.50 5.15 29.85 0.15 -0.35 16
22 C -0.09 -1.70 4.86 -19.87 -0.10 -1.79 16
23 C -0.12 -1.95 9.72 22.27 0.22 -1.73 16
24 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16
25 C -0.14 -2.47 10.05 22.27 0.22 -2.24 16
26 C -0.14 -2.85 10.05 22.27 0.22 -2.62 16
27 C -0.13 -2.90 9.48 22.27 0.21 -2.69 16
28 C -0.14 -2.33 9.78 30.62 0.30 -2.03 16
29 C -0.14 -1.87 9.93 30.62 0.30 -1.57 16
30 C 0.11 3.28 6.30 86.85 0.55 3.83 16
31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16
32 H 0.07 1.84 6.07 -2.39 -0.01 1.82 16
33 H 0.06 1.86 6.03 -2.38 -0.01 1.84 16
34 H 0.38 19.04 7.12 -92.71 -0.66 18.38 16
35 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16
36 H 0.08 2.21 5.68 -2.39 -0.01 2.20 16
37 H 0.08 2.19 7.98 -2.39 -0.02 2.17 16
38 H 0.09 1.45 6.06 -2.39 -0.01 1.43 16
39 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16
40 H 0.09 1.18 5.80 -2.38 -0.01 1.17 16
41 H 0.11 0.99 8.06 -2.39 -0.02 0.97 16
42 H 0.14 1.57 8.02 -2.91 -0.02 1.55 16
43 H 0.14 1.60 8.06 -2.92 -0.02 1.57 16
44 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16
45 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16
46 H 0.11 2.48 8.06 -2.91 -0.02 2.45 16
47 H 0.08 1.66 8.02 -2.38 -0.02 1.64 16
48 H 0.13 1.34 8.11 -2.38 -0.02 1.32 16
49 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16
50 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16
51 H 0.06 1.87 7.99 -2.39 -0.02 1.85 16
52 H 0.08 2.20 5.72 -2.39 -0.01 2.19 16
Total: -1.00 -71.37 412.44 3.76 -67.61
By element:
Atomic # 1 Polarization: 34.66 SS G_CDS: 0.25 Total: 34.91 kcal
Atomic # 6 Polarization: -22.14 SS G_CDS: 5.59 Total: -16.55 kcal
Atomic # 7 Polarization: -108.27 SS G_CDS: -4.05 Total: -112.32 kcal
Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal
Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal
Total: -71.37 3.76 -67.61 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724534371.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.615 kcal
(2) G-P(sol) polarization free energy of solvation -71.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.241 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.614 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.002 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds