Wall clock time and date at job start Sat Apr 11 2020 06:46:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52996 * 109.47201 * 2 1
4 4 C 1.53003 * 109.47070 * 239.99994 * 2 1 3
5 5 O 1.45197 * 109.47222 * 120.00469 * 2 1 3
6 6 C 1.34636 * 117.00462 * 59.99760 * 5 2 1
7 7 O 1.21515 * 119.99742 * 359.97438 * 6 5 2
8 8 N 1.34781 * 120.00231 * 180.02562 * 6 5 2
9 9 C 1.45123 * 118.75616 * 0.02562 * 8 6 5
10 10 C 1.54807 * 109.53988 * 269.26720 * 9 8 6
11 11 O 1.38018 * 109.47961 * 292.12011 * 10 9 8
12 12 C 1.42181 * 119.42175 * 63.42725 * 11 10 9
13 13 C 1.51534 * 108.74623 * 272.75164 * 12 11 10
14 14 H 1.09003 * 109.45137 * 331.40779 * 13 12 11
15 15 N 1.46905 * 109.45146 * 211.45375 * 13 12 11
16 16 C 1.46901 * 110.99870 * 84.95451 * 15 13 12
17 17 C 1.53004 * 109.46916 * 180.02562 * 16 15 13
18 18 C 1.52999 * 109.46923 * 299.99733 * 17 16 15
19 19 C 1.52999 * 109.46998 * 59.99872 * 17 16 15
20 20 C 1.50703 * 109.46807 * 179.97438 * 17 16 15
21 21 H 1.07995 * 120.00107 * 359.97438 * 20 17 16
22 22 C 1.37878 * 119.99714 * 179.97438 * 20 17 16
23 23 N 1.31510 * 119.99944 * 0.02562 * 22 20 17
24 24 Si 1.86799 * 119.99765 * 179.97438 * 22 20 17
25 25 H 1.48497 * 109.47371 * 0.02562 * 24 22 20
26 26 H 1.48500 * 109.46838 * 120.00669 * 24 22 20
27 27 H 1.48505 * 109.46977 * 239.99980 * 24 22 20
28 28 C 1.47506 * 118.75678 * 180.02562 * 8 6 5
29 29 H 1.09008 * 109.46974 * 299.99376 * 1 2 3
30 30 H 1.08990 * 109.47248 * 59.99614 * 1 2 3
31 31 H 1.09004 * 109.47299 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46775 * 179.97438 * 3 2 1
33 33 H 1.08996 * 109.47159 * 299.99934 * 3 2 1
34 34 H 1.08999 * 109.47226 * 60.00545 * 3 2 1
35 35 H 1.09000 * 109.47157 * 300.00557 * 4 2 1
36 36 H 1.09004 * 109.46858 * 60.00095 * 4 2 1
37 37 H 1.08995 * 109.47142 * 180.02562 * 4 2 1
38 38 H 1.08997 * 109.46025 * 29.29109 * 9 8 6
39 39 H 1.09002 * 109.45282 * 149.26458 * 9 8 6
40 40 H 1.09006 * 109.46752 * 52.12070 * 10 9 8
41 41 H 1.08997 * 109.46934 * 172.11792 * 10 9 8
42 42 H 1.09000 * 109.57912 * 152.97681 * 12 11 10
43 43 H 1.09004 * 109.61183 * 32.53694 * 12 11 10
44 44 H 1.00901 * 110.99869 * 321.00163 * 15 13 12
45 45 H 1.09004 * 109.47031 * 299.99620 * 16 15 13
46 46 H 1.08995 * 109.47111 * 59.99900 * 16 15 13
47 47 H 1.09002 * 109.47301 * 60.00027 * 18 17 16
48 48 H 1.09001 * 109.47017 * 180.02562 * 18 17 16
49 49 H 1.09005 * 109.47249 * 300.00302 * 18 17 16
50 50 H 1.09001 * 109.46999 * 60.00126 * 19 17 16
51 51 H 1.09001 * 109.46478 * 179.97438 * 19 17 16
52 52 H 1.08993 * 109.47197 * 299.99817 * 19 17 16
53 53 H 0.97007 * 120.00038 * 179.97438 * 23 22 20
54 54 H 1.09001 * 109.16771 * 17.99174 * 28 8 6
55 55 H 1.09004 * 109.12355 * 258.76694 * 28 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2493
5 8 2.0140 -0.6846 1.1855
6 6 1.6523 -1.9724 1.3383
7 8 0.9508 -2.5095 0.5039
8 7 2.0673 -2.6655 2.4171
9 6 2.9027 -1.9970 3.3975
10 6 4.3932 -2.1947 3.0287
11 8 4.7344 -3.5226 3.1878
12 6 4.1032 -4.5076 2.3797
13 6 2.8191 -4.9428 3.0564
14 1 2.9205 -4.8279 4.1356
15 7 2.5512 -6.3515 2.7373
16 6 3.2665 -7.2451 3.6580
17 6 2.9639 -8.7002 3.2946
18 6 1.4588 -8.9513 3.4066
19 6 3.4213 -8.9734 1.8604
20 6 3.6983 -9.6169 4.2388
21 1 4.3191 -9.2030 5.0196
22 6 3.5776 -10.9839 4.1058
23 7 2.8220 -11.4878 3.1546
24 14 4.4885 -12.1201 5.2756
25 1 5.2650 -11.3101 6.2482
26 1 3.5105 -12.9661 6.0058
27 1 5.4136 -12.9877 4.5031
28 6 1.6552 -4.0750 2.5566
29 1 -0.3633 0.5138 0.8901
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3634 -1.0277 0.0005
32 1 3.1300 1.4424 0.0005
33 1 1.6767 1.9563 -0.8900
34 1 1.6768 1.9563 0.8900
35 1 1.6766 -1.7489 -1.2493
36 1 1.6766 -0.2074 -2.1393
37 1 3.1299 -0.7217 -1.2490
38 1 2.6693 -0.9324 3.4079
39 1 2.7138 -2.4199 4.3842
40 1 4.5529 -1.9003 1.9914
41 1 5.0134 -1.5796 3.6806
42 1 4.7655 -5.3658 2.2658
43 1 3.8757 -4.0864 1.4004
44 1 2.7876 -6.5563 1.7780
45 1 4.3389 -7.0665 3.5779
46 1 2.9410 -7.0501 4.6798
47 1 0.9280 -8.2883 2.7235
48 1 1.2433 -9.9881 3.1482
49 1 1.1330 -8.7567 4.4285
50 1 4.4935 -8.7944 1.7807
51 1 3.2061 -10.0101 1.6017
52 1 2.8905 -8.3104 1.1773
53 1 2.7374 -12.4496 3.0608
54 1 1.3209 -4.4476 1.5884
55 1 0.8314 -4.1374 3.2677
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000926566728.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:06
Heat of formation + Delta-G solvation = -133.801979 kcal
Electronic energy + Delta-G solvation = -32483.383313 eV
Core-core repulsion = 28327.307486 eV
Total energy + Delta-G solvation = -4156.075826 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 342.235 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.15270 -40.64405 -38.62364 -38.29538 -36.52043 -36.09348 -34.78404 -33.34025
-31.11345 -29.04119 -28.36234 -28.28807 -27.77397 -27.48405 -27.21924 -25.54026
-24.24862 -23.06521 -21.51546 -20.40675 -20.30854 -19.09436 -18.06366 -17.93587
-17.65555 -17.53239 -16.95836 -16.87550 -16.65720 -16.10617 -15.63696 -15.50179
-15.26138 -14.99267 -14.73141 -14.48718 -14.44476 -14.13998 -13.84984 -13.70017
-13.39567 -13.31382 -13.09151 -13.06907 -13.02665 -12.90540 -12.85384 -12.75537
-12.50873 -12.47480 -12.43387 -12.28637 -12.15801 -12.05224 -11.95441 -11.72474
-11.38673 -11.33239 -11.07175 -10.97009 -10.91663 -10.57360 -10.32855 -9.82174
-9.21498 -7.95051 -6.11448 1.02928 1.42040 1.45782 1.54875 1.68349
2.47440 2.66129 2.73724 3.27428 3.40586 3.65088 3.73425 3.76279
3.80615 3.95741 4.04936 4.11006 4.16723 4.23054 4.37781 4.48844
4.51230 4.60149 4.62095 4.64682 4.69353 4.77042 4.79643 4.82735
4.85188 4.87553 4.89500 4.94553 4.95355 5.05828 5.12175 5.18666
5.28004 5.28937 5.30713 5.38292 5.45311 5.47680 5.56205 5.72598
5.79261 6.08353 6.20863 6.23593 6.34609 6.47489 6.53501 6.58663
6.98160 7.21943 7.56141 9.03207
Molecular weight = 342.24amu
Principal moments of inertia in cm(-1)
A = 0.023687 B = 0.002353 C = 0.002248
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1181.777483 B =11896.638529 C =12453.921045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.124 3.876
3 C -0.133 4.133
4 C -0.180 4.180
5 O -0.360 6.360
6 C 0.644 3.356
7 O -0.591 6.591
8 N -0.591 5.591
9 C 0.070 3.930
10 C 0.057 3.943
11 O -0.396 6.396
12 C 0.056 3.944
13 C 0.057 3.943
14 H 0.090 0.910
15 N -0.673 5.673
16 C 0.095 3.905
17 C 0.060 3.940
18 C -0.107 4.107
19 C -0.123 4.123
20 C -0.522 4.522
21 H 0.046 0.954
22 C 0.021 3.979
23 N -0.904 5.904
24 Si 0.943 3.057
25 H -0.271 1.271
26 H -0.284 1.284
27 H -0.284 1.284
28 C 0.145 3.855
29 H 0.063 0.937
30 H 0.089 0.911
31 H 0.058 0.942
32 H 0.069 0.931
33 H 0.100 0.900
34 H 0.072 0.928
35 H 0.057 0.943
36 H 0.090 0.910
37 H 0.060 0.940
38 H 0.110 0.890
39 H 0.097 0.903
40 H 0.037 0.963
41 H 0.134 0.866
42 H 0.082 0.918
43 H 0.047 0.953
44 H 0.342 0.658
45 H 0.015 0.985
46 H 0.053 0.947
47 H 0.035 0.965
48 H 0.047 0.953
49 H 0.012 0.988
50 H 0.018 0.982
51 H 0.055 0.945
52 H 0.033 0.967
53 H 0.256 0.744
54 H 0.083 0.917
55 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.441 28.048 -4.853 28.468
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.088 3.912
3 C -0.190 4.190
4 C -0.237 4.237
5 O -0.275 6.275
6 C 0.399 3.601
7 O -0.481 6.481
8 N -0.331 5.331
9 C -0.053 4.053
10 C -0.021 4.021
11 O -0.314 6.314
12 C -0.022 4.022
13 C -0.055 4.055
14 H 0.108 0.892
15 N -0.306 5.306
16 C -0.034 4.034
17 C 0.059 3.941
18 C -0.165 4.165
19 C -0.181 4.181
20 C -0.560 4.560
21 H 0.064 0.936
22 C -0.178 4.178
23 N -0.543 5.543
24 Si 0.770 3.230
25 H -0.196 1.196
26 H -0.211 1.211
27 H -0.210 1.210
28 C 0.023 3.977
29 H 0.082 0.918
30 H 0.108 0.892
31 H 0.077 0.923
32 H 0.089 0.911
33 H 0.119 0.881
34 H 0.091 0.909
35 H 0.076 0.924
36 H 0.109 0.891
37 H 0.079 0.921
38 H 0.128 0.872
39 H 0.115 0.885
40 H 0.055 0.945
41 H 0.151 0.849
42 H 0.100 0.900
43 H 0.066 0.934
44 H 0.162 0.838
45 H 0.033 0.967
46 H 0.072 0.928
47 H 0.053 0.947
48 H 0.066 0.934
49 H 0.031 0.969
50 H 0.037 0.963
51 H 0.074 0.926
52 H 0.052 0.948
53 H 0.066 0.934
54 H 0.101 0.899
55 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -1.172 27.716 -4.714 28.139
hybrid contribution 0.997 -1.107 -0.032 1.490
sum -0.175 26.610 -4.746 27.030
Atomic orbital electron populations
1.22464 0.94070 1.03498 1.03614 1.22421 0.94545 0.92821 0.81425
1.21865 1.02436 0.90324 1.04403 1.22470 1.01489 1.02107 0.97667
1.86307 1.71333 1.22616 1.47204 1.18266 0.78811 0.81157 0.81872
1.90905 1.42235 1.70914 1.44091 1.46871 1.53028 1.11648 1.21581
1.22715 0.90642 0.99534 0.92392 1.22783 0.95315 0.82614 1.01403
1.86311 1.66129 1.16327 1.62602 1.22995 0.94397 0.91303 0.93510
1.22279 0.92954 0.88953 1.01265 0.89187 1.60434 1.61530 1.00929
1.07700 1.21842 0.93758 0.92837 0.94955 1.18154 0.93153 0.89877
0.92910 1.21490 0.97178 1.00536 0.97321 1.21688 0.97194 1.01704
0.97518 1.21447 1.28082 0.91659 1.14859 0.93568 1.25531 0.96078
0.99443 0.96735 1.69977 1.39611 1.11795 1.32920 0.85737 0.78584
0.79188 0.79452 1.19573 1.21061 1.21034 1.21606 0.96206 0.76671
1.03203 0.91785 0.89172 0.92330 0.91148 0.88114 0.90911 0.92392
0.89111 0.92138 0.87222 0.88479 0.94508 0.84862 0.89983 0.93419
0.83823 0.96693 0.92843 0.94650 0.93423 0.96880 0.96264 0.92619
0.94836 0.93411 0.89863 0.90326
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.06 8.37 71.98 0.60 -2.46 16
2 C 0.12 2.08 1.13 -10.79 -0.01 2.07 16
3 C -0.13 -1.30 8.85 71.98 0.64 -0.66 16
4 C -0.18 -3.21 8.37 71.98 0.60 -2.60 16
5 O -0.36 -7.48 8.56 -55.45 -0.47 -7.95 16
6 C 0.64 16.38 7.65 129.79 0.99 17.37 16
7 O -0.59 -18.25 11.18 19.79 0.22 -18.02 16
8 N -0.59 -13.57 2.19 -948.34 -2.08 -15.65 16
9 C 0.07 1.20 5.57 87.25 0.49 1.69 16
10 C 0.06 1.02 6.82 72.60 0.49 1.51 16
11 O -0.40 -9.79 9.86 -117.90 -1.16 -10.96 16
12 C 0.06 1.49 5.72 71.50 0.41 1.89 16
13 C 0.06 1.56 2.35 44.62 0.10 1.67 16
14 H 0.09 2.53 7.67 -2.39 -0.02 2.51 16
15 N -0.67 -22.26 5.39 -493.09 -2.66 -24.92 16
16 C 0.09 3.75 4.32 86.30 0.37 4.13 16
17 C 0.06 2.82 0.57 -52.93 -0.03 2.79 16
18 C -0.11 -5.18 8.09 71.98 0.58 -4.59 16
19 C -0.12 -5.71 7.92 71.98 0.57 -5.14 16
20 C -0.52 -27.82 8.01 25.60 0.21 -27.62 16
21 H 0.05 2.47 7.74 -2.91 -0.02 2.44 16
22 C 0.02 1.13 5.15 84.66 0.44 1.57 16
23 N -0.90 -50.42 9.35 21.45 0.20 -50.22 16
24 Si 0.94 43.35 29.54 68.60 2.03 45.37 16
25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16
28 C 0.14 3.76 5.77 86.37 0.50 4.25 16
29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16
30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
31 H 0.06 1.39 5.88 -2.38 -0.01 1.38 16
32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16
33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16
34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
35 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16
36 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16
37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
38 H 0.11 1.51 7.22 -2.39 -0.02 1.50 16
39 H 0.10 1.57 8.11 -2.39 -0.02 1.55 16
40 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16
41 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16
42 H 0.08 2.37 7.23 -2.39 -0.02 2.36 16
43 H 0.05 1.27 7.40 -2.38 -0.02 1.26 16
44 H 0.34 11.31 6.51 -89.69 -0.58 10.73 16
45 H 0.01 0.60 7.43 -2.39 -0.02 0.58 16
46 H 0.05 2.17 8.05 -2.39 -0.02 2.15 16
47 H 0.03 1.55 7.60 -2.39 -0.02 1.53 16
48 H 0.05 2.55 6.07 -2.39 -0.01 2.54 16
49 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16
50 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16
51 H 0.05 2.92 6.07 -2.39 -0.01 2.90 16
52 H 0.03 1.36 6.57 -2.39 -0.02 1.34 16
53 H 0.26 13.78 8.31 -92.70 -0.77 13.01 16
54 H 0.08 2.48 6.97 -2.39 -0.02 2.47 16
55 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16
Total: -1.00 -62.31 410.50 3.30 -59.00
By element:
Atomic # 1 Polarization: 27.21 SS G_CDS: 0.28 Total: 27.48 kcal
Atomic # 6 Polarization: -11.09 SS G_CDS: 6.95 Total: -4.13 kcal
Atomic # 7 Polarization: -86.26 SS G_CDS: -4.54 Total: -90.79 kcal
Atomic # 8 Polarization: -35.52 SS G_CDS: -1.42 Total: -36.93 kcal
Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal
Total: -62.31 3.30 -59.00 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000926566728.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.798 kcal
(2) G-P(sol) polarization free energy of solvation -62.307 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.802 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds