Wall clock time and date at job start Sat Apr 11 2020 06:48:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.36933 * 119.99777 * 2 1
4 4 H 1.08004 * 119.99684 * 165.45139 * 3 2 1
5 5 C 1.38807 * 120.00116 * 345.72171 * 3 2 1
6 6 N 1.31621 * 120.00148 * 344.60861 * 5 3 2
7 7 Si 1.86802 * 120.00013 * 164.60414 * 5 3 2
8 8 H 1.48503 * 109.47272 * 0.02562 * 7 5 3
9 9 H 1.48506 * 109.47137 * 120.00059 * 7 5 3
10 10 H 1.48499 * 109.47491 * 240.00421 * 7 5 3
11 11 C 1.46505 * 120.00169 * 180.02562 * 2 1 3
12 12 C 1.52998 * 109.46700 * 269.99521 * 11 2 1
13 13 O 1.42903 * 109.47139 * 65.00064 * 12 11 2
14 14 C 1.42898 * 113.99960 * 179.97438 * 13 12 11
15 15 C 1.53002 * 109.47116 * 180.02562 * 14 13 12
16 16 N 1.46494 * 109.47136 * 64.99983 * 15 14 13
17 17 C 1.34779 * 120.00181 * 179.97438 * 16 15 14
18 18 O 1.21284 * 119.99438 * 0.02562 * 17 16 15
19 19 C 1.50697 * 120.00285 * 180.02562 * 17 16 15
20 20 H 1.09001 * 109.58402 * 349.56641 * 19 17 16
21 21 C 1.53190 * 109.58697 * 109.99791 * 19 17 16
22 22 C 1.53042 * 109.30991 * 174.42234 * 21 19 17
23 23 C 1.53040 * 109.53971 * 298.63244 * 22 21 19
24 24 C 1.53191 * 109.31169 * 61.36732 * 23 22 21
25 25 N 1.46927 * 108.77474 * 305.36345 * 24 23 22
26 26 C 1.34776 * 120.63433 * 233.58766 * 25 24 23
27 27 N 1.34781 * 119.99868 * 5.22997 * 26 25 24
28 28 O 1.21585 * 120.00398 * 185.22891 * 26 25 24
29 29 H 1.08998 * 109.47468 * 84.69219 * 1 2 3
30 30 H 1.09008 * 109.46746 * 204.68958 * 1 2 3
31 31 H 1.08998 * 109.47316 * 324.68555 * 1 2 3
32 32 H 0.97001 * 119.99716 * 180.02562 * 6 5 3
33 33 H 1.09003 * 109.46907 * 29.99142 * 11 2 1
34 34 H 1.08993 * 109.46994 * 149.99361 * 11 2 1
35 35 H 1.08998 * 109.46733 * 184.99661 * 12 11 2
36 36 H 1.08998 * 109.47183 * 305.00001 * 12 11 2
37 37 H 1.09002 * 109.47604 * 300.00121 * 14 13 12
38 38 H 1.09003 * 109.46805 * 60.00324 * 14 13 12
39 39 H 1.09001 * 109.46923 * 185.00533 * 15 14 13
40 40 H 1.09000 * 109.47183 * 305.00004 * 15 14 13
41 41 H 0.96998 * 120.00278 * 0.02562 * 16 15 14
42 42 H 1.08994 * 109.49643 * 294.36876 * 21 19 17
43 43 H 1.09000 * 109.49777 * 54.47018 * 21 19 17
44 44 H 1.09004 * 109.45713 * 178.60792 * 22 21 19
45 45 H 1.09003 * 109.45981 * 58.65705 * 22 21 19
46 46 H 1.09004 * 109.49513 * 301.41589 * 23 22 21
47 47 H 1.08996 * 109.50079 * 181.31864 * 23 22 21
48 48 H 1.09004 * 109.58437 * 185.58371 * 24 23 22
49 49 H 1.08991 * 109.70683 * 65.22158 * 24 23 22
50 50 H 0.97007 * 119.99518 * 5.61135 * 27 26 25
51 51 H 0.96993 * 120.00478 * 185.60362 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1859 0.0000
4 1 3.2037 1.2009 0.2350
5 6 1.4877 2.3694 -0.2965
6 7 0.3015 2.3353 -0.8658
7 14 2.2804 4.0107 0.1126
8 1 3.6048 3.7774 0.7428
9 1 2.4577 4.7990 -1.1334
10 1 1.4095 4.7604 1.0531
11 6 2.1975 -1.2687 -0.0006
12 6 2.4526 -1.7109 1.4418
13 8 1.2061 -1.9943 2.0806
14 6 1.3326 -2.4187 3.4392
15 6 -0.0563 -2.6932 4.0192
16 7 -0.6648 -3.8245 3.3148
17 6 -1.8970 -4.2486 3.6589
18 8 -2.5022 -3.6934 4.5513
19 6 -2.5227 -5.4127 2.9347
20 1 -1.9252 -5.6612 2.0576
21 6 -2.5930 -6.6226 3.8716
22 6 -3.3533 -7.7558 3.1787
23 6 -4.7813 -7.3003 2.8700
24 6 -4.7358 -6.0980 1.9218
25 7 -3.8861 -5.0578 2.5174
26 6 -4.3482 -3.8019 2.6775
27 7 -5.6329 -3.5146 2.3884
28 8 -3.6063 -2.9281 3.0828
29 1 -0.3634 0.0951 -1.0232
30 1 -0.3633 -0.9338 0.4293
31 1 -0.3634 0.8385 0.5940
32 1 -0.1609 3.1624 -1.0732
33 1 1.6084 -2.0282 -0.5146
34 1 3.1498 -1.1382 -0.5144
35 1 3.0733 -2.6069 1.4427
36 1 2.9643 -0.9138 1.9810
37 1 1.9300 -3.3295 3.4813
38 1 1.8213 -1.6365 4.0202
39 1 0.0331 -2.9307 5.0793
40 1 -0.6825 -1.8095 3.8965
41 1 -0.1806 -4.2687 2.6013
42 1 -1.5835 -6.9557 4.1120
43 1 -3.1125 -6.3432 4.7882
44 1 -3.3833 -8.6265 3.8337
45 1 -2.8469 -8.0179 2.2497
46 1 -5.2802 -7.0145 3.7961
47 1 -5.3292 -8.1156 2.3977
48 1 -5.7435 -5.7082 1.7774
49 1 -4.3208 -6.4030 0.9612
50 1 -6.2456 -4.2257 2.1434
51 1 -5.9449 -2.5970 2.4254
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001331160354.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:05
Heat of formation + Delta-G solvation = -59.168229 kcal
Electronic energy + Delta-G solvation = -31634.606452 eV
Core-core repulsion = 27378.226644 eV
Total energy + Delta-G solvation = -4256.379808 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.210 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.02665 -38.70509 -37.62935 -37.41311 -35.34080 -34.24698 -33.82867 -32.61888
-31.64823 -31.30887 -29.36407 -27.75421 -25.87316 -25.61986 -24.18768 -22.95592
-22.33078 -21.68738 -20.62502 -20.26425 -19.60408 -18.55868 -17.08676 -16.80255
-16.60270 -16.19703 -15.95461 -15.64720 -15.13464 -15.01588 -14.79995 -14.71146
-14.40431 -14.30054 -13.96765 -13.62938 -13.54917 -13.32926 -13.25845 -13.00219
-12.76958 -12.19137 -12.02734 -11.88206 -11.59653 -11.52379 -11.27525 -11.25014
-11.09815 -11.05908 -10.71739 -10.55916 -10.51183 -9.92284 -9.84085 -9.76916
-9.69780 -9.67950 -9.27690 -9.03726 -8.87072 -8.44377 -8.37373 -6.66748
-5.57729 -2.96909 2.38639 3.07543 3.29961 3.45959 3.46980 3.52364
3.54478 4.03079 4.18776 4.37444 4.41596 4.50613 4.61233 4.68200
4.83938 4.92665 5.04721 5.11184 5.25182 5.34548 5.36836 5.44331
5.45460 5.51491 5.60914 5.61970 5.64989 5.67492 5.82905 5.93040
6.01116 6.15073 6.20659 6.24168 6.30260 6.57475 6.59002 6.74877
6.81895 6.94040 7.18462 7.73087 7.78412 7.80012 7.80713 7.85847
8.03840 8.51698 8.54440 8.79140 9.38631 10.04186 10.51476 11.46840
Molecular weight = 342.21amu
Principal moments of inertia in cm(-1)
A = 0.015449 B = 0.002611 C = 0.002435
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1811.952333 B =10722.916292 C =11498.048269
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.174 3.826
2 N -0.599 5.599
3 C -0.250 4.250
4 H 0.068 0.932
5 C -0.004 4.004
6 N -0.908 5.908
7 Si 0.901 3.099
8 H -0.280 1.280
9 H -0.292 1.292
10 H -0.290 1.290
11 C 0.154 3.846
12 C 0.041 3.959
13 O -0.367 6.367
14 C 0.049 3.951
15 C 0.132 3.868
16 N -0.721 5.721
17 C 0.523 3.477
18 O -0.505 6.505
19 C 0.149 3.851
20 H 0.086 0.914
21 C -0.123 4.123
22 C -0.117 4.117
23 C -0.138 4.138
24 C 0.115 3.885
25 N -0.622 5.622
26 C 0.697 3.303
27 N -0.870 5.870
28 O -0.540 6.540
29 H 0.016 0.984
30 H 0.006 0.994
31 H 0.046 0.954
32 H 0.250 0.750
33 H 0.042 0.958
34 H 0.060 0.940
35 H 0.029 0.971
36 H 0.046 0.954
37 H 0.044 0.956
38 H 0.059 0.941
39 H 0.072 0.928
40 H 0.078 0.922
41 H 0.397 0.603
42 H 0.079 0.921
43 H 0.077 0.923
44 H 0.070 0.930
45 H 0.068 0.932
46 H 0.069 0.931
47 H 0.077 0.923
48 H 0.080 0.920
49 H 0.072 0.928
50 H 0.390 0.610
51 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.312 -25.299 7.540 27.993
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.322 5.322
3 C -0.379 4.379
4 H 0.086 0.914
5 C -0.201 4.201
6 N -0.554 5.554
7 Si 0.732 3.268
8 H -0.205 1.205
9 H -0.219 1.219
10 H -0.217 1.217
11 C 0.025 3.975
12 C -0.038 4.038
13 O -0.286 6.286
14 C -0.028 4.028
15 C 0.008 3.992
16 N -0.374 5.374
17 C 0.308 3.692
18 O -0.378 6.378
19 C 0.041 3.959
20 H 0.104 0.896
21 C -0.162 4.162
22 C -0.155 4.155
23 C -0.176 4.176
24 C -0.008 4.008
25 N -0.363 5.363
26 C 0.397 3.603
27 N -0.441 5.441
28 O -0.413 6.413
29 H 0.034 0.966
30 H 0.024 0.976
31 H 0.065 0.935
32 H 0.060 0.940
33 H 0.061 0.939
34 H 0.078 0.922
35 H 0.047 0.953
36 H 0.064 0.936
37 H 0.062 0.938
38 H 0.077 0.923
39 H 0.090 0.910
40 H 0.096 0.904
41 H 0.231 0.769
42 H 0.098 0.902
43 H 0.095 0.905
44 H 0.088 0.912
45 H 0.086 0.914
46 H 0.087 0.913
47 H 0.095 0.905
48 H 0.098 0.902
49 H 0.090 0.910
50 H 0.220 0.780
51 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -9.416 -24.186 8.342 27.262
hybrid contribution 0.365 0.768 -0.184 0.870
sum -9.051 -23.418 8.158 26.399
Atomic orbital electron populations
1.20731 0.81748 0.96261 0.98339 1.43896 1.02376 1.00188 1.85699
1.19263 0.93843 0.84543 1.40270 0.91365 1.24854 0.97251 0.97932
1.00102 1.70172 1.15019 1.25555 1.44640 0.86227 0.78396 0.84535
0.77636 1.20542 1.21943 1.21717 1.20743 0.96546 0.89049 0.91131
1.23557 0.85204 0.97004 0.98067 1.88058 1.30314 1.87272 1.22964
1.22653 0.95939 0.98343 0.85914 1.21259 0.92964 0.90017 0.94930
1.45676 1.17678 1.34619 1.39438 1.19687 0.81001 0.83912 0.84601
1.90705 1.60043 1.55399 1.31691 1.20921 0.83145 0.94124 0.97732
0.89599 1.21859 1.01834 0.93693 0.98841 1.21496 0.95331 0.97615
1.01014 1.21962 0.97698 0.97640 1.00334 1.21641 0.94582 0.88261
0.96339 1.46943 1.14054 1.08750 1.66581 1.15963 0.82743 0.82913
0.78720 1.43165 1.10036 1.13034 1.77898 1.91228 1.55087 1.46037
1.48980 0.96591 0.97587 0.93492 0.94007 0.93940 0.92179 0.95327
0.93611 0.93801 0.92327 0.91019 0.90368 0.76897 0.90238 0.90463
0.91153 0.91353 0.91267 0.90491 0.90222 0.90986 0.78050 0.75416
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 4.80 8.75 59.85 0.52 5.33 16
2 N -0.60 -16.07 2.90 -181.12 -0.52 -16.59 16
3 C -0.25 -7.18 9.73 -15.06 -0.15 -7.33 16
4 H 0.07 1.89 7.87 -52.48 -0.41 1.48 16
5 C 0.00 -0.12 5.09 -17.43 -0.09 -0.21 16
6 N -0.91 -28.05 10.35 55.49 0.57 -27.47 16
7 Si 0.90 22.89 29.58 -169.99 -5.03 17.86 16
8 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16
9 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16
10 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16
11 C 0.15 3.27 6.05 -4.04 -0.02 3.25 16
12 C 0.04 0.75 6.28 37.16 0.23 0.99 16
13 O -0.37 -6.90 9.21 -35.23 -0.32 -7.23 16
14 C 0.05 0.72 6.07 37.16 0.23 0.94 16
15 C 0.13 2.03 6.06 -4.04 -0.02 2.00 16
16 N -0.72 -10.28 5.50 -60.30 -0.33 -10.61 16
17 C 0.52 8.01 4.97 -10.99 -0.05 7.95 16
18 O -0.50 -9.86 13.69 -20.17 -0.28 -10.14 16
19 C 0.15 1.63 3.30 -68.75 -0.23 1.40 16
20 H 0.09 0.79 7.96 -51.93 -0.41 0.37 16
21 C -0.12 -1.01 5.35 -26.61 -0.14 -1.15 16
22 C -0.12 -0.64 5.88 -26.69 -0.16 -0.79 16
23 C -0.14 -0.71 6.08 -26.61 -0.16 -0.87 16
24 C 0.12 0.73 6.43 -3.71 -0.02 0.71 16
25 N -0.62 -6.83 2.97 -172.23 -0.51 -7.34 16
26 C 0.70 10.10 8.19 -86.91 -0.71 9.39 16
27 N -0.87 -8.68 8.77 27.63 0.24 -8.44 16
28 O -0.54 -10.86 12.38 -20.43 -0.25 -11.12 16
29 H 0.02 0.46 7.56 -51.93 -0.39 0.07 16
30 H 0.01 0.15 7.23 -51.92 -0.38 -0.23 16
31 H 0.05 1.42 6.80 -51.93 -0.35 1.07 16
32 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16
33 H 0.04 0.86 8.07 -51.93 -0.42 0.45 16
34 H 0.06 1.21 8.04 -51.93 -0.42 0.80 16
35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16
36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16
37 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16
38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16
40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16
41 H 0.40 4.82 8.34 -40.82 -0.34 4.48 16
42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
47 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16
48 H 0.08 0.36 5.58 -51.93 -0.29 0.07 16
49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
50 H 0.39 2.43 6.33 -40.82 -0.26 2.17 16
51 H 0.41 4.01 8.93 -40.82 -0.36 3.65 16
LS Contribution 401.79 15.07 6.05 6.05
Total: -1.00 -39.90 401.79 -9.83 -49.73
By element:
Atomic # 1 Polarization: 12.35 SS G_CDS: -8.67 Total: 3.68 kcal
Atomic # 6 Polarization: 22.39 SS G_CDS: -0.78 Total: 21.61 kcal
Atomic # 7 Polarization: -69.91 SS G_CDS: -0.55 Total: -70.46 kcal
Atomic # 8 Polarization: -27.63 SS G_CDS: -0.85 Total: -28.48 kcal
Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -39.90 -9.83 -49.73 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331160354.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.440 kcal
(2) G-P(sol) polarization free energy of solvation -39.902 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.341 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.729 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.168 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds