Wall clock time and date at job start Sat Apr 11 2020 06:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36937 * 119.99678 * 2 1 4 4 H 1.08004 * 119.99938 * 201.09092 * 3 2 1 5 5 C 1.38813 * 119.99988 * 21.09517 * 3 2 1 6 6 N 1.31611 * 120.00366 * 13.21386 * 5 3 2 7 7 Si 1.86803 * 119.99835 * 193.21326 * 5 3 2 8 8 H 1.48497 * 109.47123 * 59.99830 * 7 5 3 9 9 H 1.48502 * 109.46923 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47087 * 299.99726 * 7 5 3 11 11 C 1.46499 * 120.00415 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47423 * 89.99468 * 11 2 1 13 13 H 1.08999 * 109.49424 * 55.07144 * 12 11 2 14 14 C 1.53036 * 109.49903 * 295.00413 * 12 11 2 15 15 C 1.53035 * 109.53656 * 178.65122 * 14 12 11 16 16 C 1.53190 * 109.31628 * 61.36438 * 15 14 12 17 17 N 1.46927 * 108.77621 * 305.36784 * 16 15 14 18 18 C 1.34784 * 120.62833 * 233.58629 * 17 16 15 19 19 O 1.21283 * 119.99337 * 179.97438 * 18 17 16 20 20 C 1.50699 * 120.00036 * 359.97438 * 18 17 16 21 21 H 1.08998 * 115.56316 * 325.69114 * 20 18 17 22 22 C 1.53000 * 117.49885 * 111.37989 * 20 18 17 23 23 C 1.53000 * 60.00071 * 107.48737 * 22 20 18 24 24 H 1.08998 * 117.50053 * 252.51186 * 23 22 20 25 25 C 1.50693 * 117.49689 * 107.48714 * 23 22 20 26 26 C 1.38238 * 120.00379 * 351.12164 * 25 23 22 27 27 C 1.38230 * 120.00134 * 179.76254 * 26 25 23 28 28 C 1.38233 * 120.00042 * 0.51130 * 27 26 25 29 29 C 1.38240 * 120.00016 * 359.73947 * 28 27 26 30 30 C 1.38232 * 119.99702 * 0.02562 * 29 28 27 31 31 C 1.46924 * 118.74068 * 53.85222 * 17 16 15 32 32 H 1.08997 * 109.47266 * 275.21185 * 1 2 3 33 33 H 1.08995 * 109.47430 * 35.21952 * 1 2 3 34 34 H 1.09004 * 109.47179 * 155.21385 * 1 2 3 35 35 H 0.96999 * 120.00770 * 179.97438 * 6 5 3 36 36 H 1.09004 * 109.46595 * 329.99692 * 11 2 1 37 37 H 1.09008 * 109.47109 * 210.00197 * 11 2 1 38 38 H 1.08996 * 109.45947 * 58.62653 * 14 12 11 39 39 H 1.09001 * 109.44680 * 298.66393 * 14 12 11 40 40 H 1.09001 * 109.49737 * 301.40911 * 15 14 12 41 41 H 1.09000 * 109.49696 * 181.31665 * 15 14 12 42 42 H 1.09004 * 109.58943 * 185.57479 * 16 15 14 43 43 H 1.09006 * 109.58666 * 65.15180 * 16 15 14 44 44 H 1.09008 * 117.49849 * 359.97438 * 22 20 18 45 45 H 1.08994 * 117.52016 * 214.97217 * 22 20 18 46 46 H 1.08004 * 119.99473 * 359.97438 * 26 25 23 47 47 H 1.07997 * 120.00077 * 180.22944 * 27 26 25 48 48 H 1.07997 * 120.00190 * 179.72136 * 28 27 26 49 49 H 1.08004 * 119.99942 * 179.97438 * 29 28 27 50 50 H 1.08002 * 119.99530 * 179.97438 * 30 29 28 51 51 H 1.09001 * 109.58150 * 65.92941 * 31 17 16 52 52 H 1.09000 * 109.58854 * 186.35503 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1753 1.2173 -0.3366 5 6 1.5252 2.3478 0.4327 6 7 0.3817 2.2783 1.0806 7 14 2.3080 4.0100 0.0954 8 1 2.4486 4.2027 -1.3703 9 1 1.4499 5.0843 0.6564 10 1 3.6483 4.0643 0.7325 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 2.9652 -0.9130 -1.9820 14 6 1.1179 -2.0129 -2.1281 15 6 1.3697 -2.4219 -3.5812 16 6 2.2268 -3.6913 -3.6091 17 7 3.4488 -3.4541 -2.8286 18 6 4.6631 -3.6756 -3.3699 19 8 5.6643 -3.4755 -2.7153 20 6 4.7767 -4.1719 -4.7883 21 1 3.9881 -4.8504 -5.1137 22 6 5.3559 -3.2111 -5.8286 23 6 6.1828 -4.4041 -5.3450 24 1 7.0256 -4.1979 -4.6853 25 6 6.3714 -5.5534 -6.3012 26 6 5.6611 -5.5901 -7.4866 27 6 5.8378 -6.6418 -8.3660 28 6 6.7170 -7.6623 -8.0553 29 6 7.4235 -7.6283 -6.8676 30 6 7.2504 -6.5740 -5.9904 31 6 3.3218 -2.9765 -1.4450 32 1 -0.3633 0.0933 1.0234 33 1 -0.3634 0.8395 -0.5926 34 1 -0.3634 -0.9330 -0.4308 35 1 -0.0545 3.0901 1.3833 36 1 1.6084 -2.0285 0.5130 37 1 3.1500 -1.1385 0.5134 38 1 0.4877 -1.1239 -2.1050 39 1 0.6173 -2.8267 -1.6034 40 1 1.8926 -1.6184 -4.0999 41 1 0.4173 -2.6150 -4.0750 42 1 2.4916 -3.9309 -4.6390 43 1 1.6685 -4.5189 -3.1713 44 1 5.6544 -2.2199 -5.4872 45 1 4.9487 -3.2573 -6.8386 46 1 4.9706 -4.7952 -7.7271 47 1 5.2856 -6.6686 -9.2938 48 1 6.8517 -8.4862 -8.7403 49 1 8.1101 -8.4258 -6.6247 50 1 7.8021 -6.5477 -5.0623 51 1 2.8509 -3.7469 -0.8343 52 1 4.3094 -2.7442 -1.0464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661227050.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:49:13 Heat of formation + Delta-G solvation = 35.864473 kcal Electronic energy + Delta-G solvation = -29619.232358 eV Core-core repulsion = 25777.822741 eV Total energy + Delta-G solvation = -3841.409617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.61362 -39.54248 -37.90038 -36.36774 -35.50330 -32.86378 -31.64123 -31.27833 -30.91313 -30.22899 -26.42232 -26.13487 -25.33697 -24.16270 -23.48849 -22.67724 -22.37783 -21.01352 -20.55513 -19.66946 -18.66199 -17.86084 -16.94121 -16.56964 -16.05040 -15.45594 -15.24649 -15.09395 -14.95001 -14.52174 -14.16132 -14.13728 -13.87532 -13.68951 -13.47475 -13.25537 -13.21228 -12.82317 -12.78282 -12.49395 -12.37474 -12.17224 -11.63785 -11.55660 -11.32912 -11.25762 -11.00021 -10.89232 -10.87237 -10.70301 -10.68975 -10.62968 -10.32861 -10.25165 -9.95002 -9.81394 -9.72423 -9.69432 -9.23837 -8.87505 -8.57171 -8.42683 -6.70046 -5.67703 -3.12423 0.97267 1.08579 2.47931 2.96335 3.37248 3.41651 3.46535 3.48066 3.80952 4.17201 4.44319 4.53626 4.53945 4.57586 4.68133 4.73381 4.80889 4.89215 4.96089 5.08386 5.14686 5.17650 5.28371 5.29335 5.40726 5.44206 5.47054 5.63186 5.65524 5.68268 5.71400 5.74767 5.83282 5.84686 5.94232 6.04013 6.12878 6.16666 6.18218 6.20121 6.33653 6.34810 6.49221 6.64123 6.67647 6.70630 6.81751 6.87577 7.01388 7.41607 7.47204 7.76682 7.85338 8.21876 8.43765 9.28892 9.92756 10.40702 11.36931 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.002089 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.591830 B =13400.221725 C =13773.928445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.250 4.250 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.158 3.842 12 C -0.119 4.119 13 H 0.072 0.928 14 C -0.110 4.110 15 C -0.134 4.134 16 C 0.108 3.892 17 N -0.602 5.602 18 C 0.542 3.458 19 O -0.544 6.544 20 C -0.175 4.175 21 H 0.125 0.875 22 C -0.143 4.143 23 C -0.086 4.086 24 H 0.127 0.873 25 C -0.050 4.050 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.126 4.126 29 C -0.118 4.118 30 C -0.110 4.110 31 C 0.116 3.884 32 H 0.027 0.973 33 H 0.040 0.960 34 H 0.002 0.998 35 H 0.252 0.748 36 H 0.036 0.964 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.063 0.937 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -20.077 -18.548 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.380 4.380 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.556 5.556 7 Si 0.733 3.267 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.030 3.970 12 C -0.142 4.142 13 H 0.091 0.909 14 C -0.148 4.148 15 C -0.172 4.172 16 C -0.015 4.015 17 N -0.334 5.334 18 C 0.330 3.670 19 O -0.421 6.421 20 C -0.196 4.196 21 H 0.142 0.858 22 C -0.180 4.180 23 C -0.105 4.105 24 H 0.145 0.855 25 C -0.050 4.050 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.144 4.144 29 C -0.136 4.136 30 C -0.128 4.128 31 C -0.006 4.006 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.020 0.980 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.142 0.858 51 H 0.082 0.918 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.286 -19.813 -18.086 27.799 hybrid contribution 0.153 0.943 -0.203 0.976 sum 7.439 -18.870 -18.289 27.311 Atomic orbital electron populations 1.20859 0.82667 0.95375 0.99314 1.43840 1.01779 1.00540 1.86029 1.19148 0.97081 0.85308 1.36479 0.91533 1.24966 0.97799 0.98340 0.98736 1.70067 1.18288 1.26851 1.40345 0.86355 0.78454 0.83937 0.77934 1.21214 1.21699 1.20978 1.20659 0.96166 0.88478 0.91682 1.22322 0.95068 0.95536 1.01235 0.90908 1.21593 0.98082 1.01671 0.93418 1.21938 0.99256 0.97112 0.98928 1.21787 0.85697 0.98179 0.95801 1.48056 1.05393 1.65362 1.14630 1.19553 0.83001 0.77241 0.87176 1.90686 1.36018 1.52668 1.62774 1.22363 0.98605 1.05286 0.93362 0.85769 1.23134 1.01738 0.95276 0.97885 1.21093 0.94595 0.95090 0.99716 0.85515 1.19160 0.96782 0.94726 0.94331 1.21092 0.99936 0.98763 0.94050 1.21128 0.98665 0.94360 0.99440 1.21168 0.97158 0.98835 0.97237 1.21158 0.99678 0.98337 0.94423 1.21041 0.98380 0.93682 0.99654 1.21841 1.01826 0.96163 0.80760 0.95490 0.94110 0.98002 0.93816 0.94559 0.93417 0.90119 0.92818 0.91616 0.91239 0.90147 0.91553 0.87546 0.87431 0.85823 0.86039 0.86179 0.85991 0.85796 0.91850 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.86 59.84 0.47 4.39 16 2 N -0.60 -14.85 2.75 -181.12 -0.50 -15.35 16 3 C -0.25 -6.91 9.67 -15.06 -0.15 -7.06 16 4 H 0.07 1.82 7.86 -52.48 -0.41 1.41 16 5 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 6 N -0.91 -26.71 10.61 55.49 0.59 -26.12 16 7 Si 0.90 22.22 29.57 -169.99 -5.03 17.19 16 8 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 C 0.16 3.20 5.14 -4.04 -0.02 3.18 16 12 C -0.12 -2.04 2.56 -90.28 -0.23 -2.28 16 13 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 14 C -0.11 -1.67 4.21 -26.69 -0.11 -1.78 16 15 C -0.13 -1.60 6.08 -26.61 -0.16 -1.77 16 16 C 0.11 1.14 6.29 -3.71 -0.02 1.12 16 17 N -0.60 -8.12 2.97 -172.50 -0.51 -8.64 16 18 C 0.54 7.71 7.48 -10.98 -0.08 7.63 16 19 O -0.54 -9.71 15.67 5.56 0.09 -9.63 16 20 C -0.18 -1.82 4.59 -91.77 -0.42 -2.25 16 21 H 0.12 1.08 6.82 -51.93 -0.35 0.72 16 22 C -0.14 -1.31 9.56 -26.73 -0.26 -1.56 16 23 C -0.09 -0.87 5.55 -91.77 -0.51 -1.38 16 24 H 0.13 1.47 7.67 -51.93 -0.40 1.07 16 25 C -0.05 -0.46 5.61 -104.63 -0.59 -1.05 16 26 C -0.12 -0.97 9.29 -39.58 -0.37 -1.33 16 27 C -0.12 -0.86 10.05 -39.59 -0.40 -1.26 16 28 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 29 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 30 C -0.11 -0.97 9.74 -39.58 -0.39 -1.36 16 31 C 0.12 1.76 5.75 -3.49 -0.02 1.74 16 32 H 0.03 0.71 7.38 -51.93 -0.38 0.33 16 33 H 0.04 1.06 7.22 -51.93 -0.38 0.69 16 34 H 0.00 0.03 6.20 -51.93 -0.32 -0.29 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.04 0.68 8.07 -51.93 -0.42 0.27 16 37 H 0.05 0.99 8.04 -51.92 -0.42 0.58 16 38 H 0.08 1.43 5.87 -51.93 -0.31 1.13 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.67 5.67 -51.93 -0.29 0.38 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 45 H 0.11 0.74 6.18 -51.93 -0.32 0.42 16 46 H 0.12 0.80 6.03 -52.48 -0.32 0.48 16 47 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 48 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 49 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 50 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 51 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 52 H 0.09 1.51 7.00 -51.93 -0.36 1.14 16 LS Contribution 405.11 15.07 6.10 6.10 Total: -1.00 -32.31 405.11 -11.86 -44.17 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.47 Total: -0.01 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -4.14 Total: -7.73 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.42 Total: -50.11 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.31 -11.86 -44.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661227050.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.039 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds