Wall clock time and date at job start Sat Apr 11 2020 06:49:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.36937 * 119.99678 * 2 1
4 4 H 1.08004 * 119.99938 * 201.09092 * 3 2 1
5 5 C 1.38813 * 119.99988 * 21.09517 * 3 2 1
6 6 N 1.31611 * 120.00366 * 13.21386 * 5 3 2
7 7 Si 1.86803 * 119.99835 * 193.21326 * 5 3 2
8 8 H 1.48497 * 109.47123 * 59.99830 * 7 5 3
9 9 H 1.48502 * 109.46923 * 180.02562 * 7 5 3
10 10 H 1.48500 * 109.47087 * 299.99726 * 7 5 3
11 11 C 1.46499 * 120.00415 * 180.02562 * 2 1 3
12 12 C 1.52999 * 109.47423 * 89.99468 * 11 2 1
13 13 H 1.08999 * 109.49424 * 55.07144 * 12 11 2
14 14 C 1.53036 * 109.49903 * 295.00413 * 12 11 2
15 15 C 1.53035 * 109.53656 * 178.65122 * 14 12 11
16 16 C 1.53190 * 109.31628 * 61.36438 * 15 14 12
17 17 N 1.46927 * 108.77621 * 305.36784 * 16 15 14
18 18 C 1.34784 * 120.62833 * 233.58629 * 17 16 15
19 19 O 1.21283 * 119.99337 * 179.97438 * 18 17 16
20 20 C 1.50699 * 120.00036 * 359.97438 * 18 17 16
21 21 H 1.08998 * 115.56316 * 325.69114 * 20 18 17
22 22 C 1.53000 * 117.49885 * 111.37989 * 20 18 17
23 23 C 1.53000 * 60.00071 * 107.48737 * 22 20 18
24 24 H 1.08998 * 117.50053 * 252.51186 * 23 22 20
25 25 C 1.50693 * 117.49689 * 107.48714 * 23 22 20
26 26 C 1.38238 * 120.00379 * 351.12164 * 25 23 22
27 27 C 1.38230 * 120.00134 * 179.76254 * 26 25 23
28 28 C 1.38233 * 120.00042 * 0.51130 * 27 26 25
29 29 C 1.38240 * 120.00016 * 359.73947 * 28 27 26
30 30 C 1.38232 * 119.99702 * 0.02562 * 29 28 27
31 31 C 1.46924 * 118.74068 * 53.85222 * 17 16 15
32 32 H 1.08997 * 109.47266 * 275.21185 * 1 2 3
33 33 H 1.08995 * 109.47430 * 35.21952 * 1 2 3
34 34 H 1.09004 * 109.47179 * 155.21385 * 1 2 3
35 35 H 0.96999 * 120.00770 * 179.97438 * 6 5 3
36 36 H 1.09004 * 109.46595 * 329.99692 * 11 2 1
37 37 H 1.09008 * 109.47109 * 210.00197 * 11 2 1
38 38 H 1.08996 * 109.45947 * 58.62653 * 14 12 11
39 39 H 1.09001 * 109.44680 * 298.66393 * 14 12 11
40 40 H 1.09001 * 109.49737 * 301.40911 * 15 14 12
41 41 H 1.09000 * 109.49696 * 181.31665 * 15 14 12
42 42 H 1.09004 * 109.58943 * 185.57479 * 16 15 14
43 43 H 1.09006 * 109.58666 * 65.15180 * 16 15 14
44 44 H 1.09008 * 117.49849 * 359.97438 * 22 20 18
45 45 H 1.08994 * 117.52016 * 214.97217 * 22 20 18
46 46 H 1.08004 * 119.99473 * 359.97438 * 26 25 23
47 47 H 1.07997 * 120.00077 * 180.22944 * 27 26 25
48 48 H 1.07997 * 120.00190 * 179.72136 * 28 27 26
49 49 H 1.08004 * 119.99942 * 179.97438 * 29 28 27
50 50 H 1.08002 * 119.99530 * 179.97438 * 30 29 28
51 51 H 1.09001 * 109.58150 * 65.92941 * 31 17 16
52 52 H 1.09000 * 109.58854 * 186.35503 * 31 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1496 1.1859 0.0000
4 1 3.1753 1.2173 -0.3366
5 6 1.5252 2.3478 0.4327
6 7 0.3817 2.2783 1.0806
7 14 2.3080 4.0100 0.0954
8 1 2.4486 4.2027 -1.3703
9 1 1.4499 5.0843 0.6564
10 1 3.6483 4.0643 0.7325
11 6 2.1975 -1.2687 -0.0006
12 6 2.4525 -1.7098 -1.4432
13 1 2.9652 -0.9130 -1.9820
14 6 1.1179 -2.0129 -2.1281
15 6 1.3697 -2.4219 -3.5812
16 6 2.2268 -3.6913 -3.6091
17 7 3.4488 -3.4541 -2.8286
18 6 4.6631 -3.6756 -3.3699
19 8 5.6643 -3.4755 -2.7153
20 6 4.7767 -4.1719 -4.7883
21 1 3.9881 -4.8504 -5.1137
22 6 5.3559 -3.2111 -5.8286
23 6 6.1828 -4.4041 -5.3450
24 1 7.0256 -4.1979 -4.6853
25 6 6.3714 -5.5534 -6.3012
26 6 5.6611 -5.5901 -7.4866
27 6 5.8378 -6.6418 -8.3660
28 6 6.7170 -7.6623 -8.0553
29 6 7.4235 -7.6283 -6.8676
30 6 7.2504 -6.5740 -5.9904
31 6 3.3218 -2.9765 -1.4450
32 1 -0.3633 0.0933 1.0234
33 1 -0.3634 0.8395 -0.5926
34 1 -0.3634 -0.9330 -0.4308
35 1 -0.0545 3.0901 1.3833
36 1 1.6084 -2.0285 0.5130
37 1 3.1500 -1.1385 0.5134
38 1 0.4877 -1.1239 -2.1050
39 1 0.6173 -2.8267 -1.6034
40 1 1.8926 -1.6184 -4.0999
41 1 0.4173 -2.6150 -4.0750
42 1 2.4916 -3.9309 -4.6390
43 1 1.6685 -4.5189 -3.1713
44 1 5.6544 -2.2199 -5.4872
45 1 4.9487 -3.2573 -6.8386
46 1 4.9706 -4.7952 -7.7271
47 1 5.2856 -6.6686 -9.2938
48 1 6.8517 -8.4862 -8.7403
49 1 8.1101 -8.4258 -6.6247
50 1 7.8021 -6.5477 -5.0623
51 1 2.8509 -3.7469 -0.8343
52 1 4.3094 -2.7442 -1.0464
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001661227050.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:12
Heat of formation + Delta-G solvation = 20.087398 kcal
Electronic energy + Delta-G solvation = -29619.916504 eV
Core-core repulsion = 25777.822741 eV
Total energy + Delta-G solvation = -3842.093763 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.58757 -40.30814 -39.08780 -37.37915 -37.07206 -34.43993 -32.94725 -32.11911
-31.81229 -31.38484 -28.19132 -27.61367 -26.79201 -24.87083 -24.53626 -23.71738
-23.22441 -22.49798 -21.42895 -20.96977 -19.68400 -18.76821 -18.57914 -17.65629
-17.21293 -16.87381 -16.23135 -16.10203 -15.84263 -15.69774 -15.59590 -15.22476
-15.13903 -14.75816 -14.60116 -14.52261 -14.20823 -14.01380 -13.80697 -13.73935
-13.46027 -13.23138 -12.93360 -12.87579 -12.76017 -12.60157 -12.34716 -12.21223
-12.14542 -12.00009 -11.92553 -11.84154 -11.66739 -11.64641 -11.54727 -11.40790
-11.19238 -10.85030 -10.60874 -9.79496 -9.64855 -9.48269 -8.75031 -7.82554
-5.29249 0.38647 0.52896 1.43043 1.44140 1.44786 1.51725 1.94706
2.49590 2.68395 3.09079 3.28904 3.37244 3.63575 3.66684 3.76025
3.87324 3.96687 4.00458 4.04417 4.10788 4.17911 4.26062 4.28432
4.32269 4.40581 4.52659 4.58067 4.62189 4.66472 4.71084 4.75510
4.81220 4.84710 4.88773 4.91805 4.97188 5.00408 5.06257 5.15740
5.20447 5.22444 5.25382 5.37396 5.49680 5.56051 5.58004 5.61470
5.62156 5.66228 5.73350 5.75701 6.13922 6.32145 6.42048 7.12812
7.16283 7.89830 8.31046 9.19423
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.020866 B = 0.002089 C = 0.002032
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1341.591830 B =13400.221725 C =13773.928445
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.180 3.820
2 N -0.614 5.614
3 C -0.258 4.258
4 H 0.060 0.940
5 C -0.054 4.054
6 N -0.937 5.937
7 Si 0.964 3.036
8 H -0.280 1.280
9 H -0.291 1.291
10 H -0.279 1.279
11 C 0.156 3.844
12 C -0.103 4.103
13 H 0.037 0.963
14 C -0.108 4.108
15 C -0.127 4.127
16 C 0.107 3.893
17 N -0.603 5.603
18 C 0.534 3.466
19 O -0.592 6.592
20 C -0.173 4.173
21 H 0.153 0.847
22 C -0.130 4.130
23 C -0.089 4.089
24 H 0.100 0.900
25 C -0.063 4.063
26 C -0.124 4.124
27 C -0.121 4.121
28 C -0.130 4.130
29 C -0.126 4.126
30 C -0.130 4.130
31 C 0.124 3.876
32 H -0.002 1.002
33 H 0.013 0.987
34 H 0.041 0.959
35 H 0.248 0.752
36 H 0.055 0.945
37 H 0.032 0.968
38 H 0.052 0.948
39 H 0.071 0.929
40 H 0.050 0.950
41 H 0.099 0.901
42 H 0.111 0.889
43 H 0.089 0.911
44 H 0.090 0.910
45 H 0.139 0.861
46 H 0.142 0.858
47 H 0.145 0.855
48 H 0.142 0.858
49 H 0.137 0.863
50 H 0.118 0.882
51 H 0.084 0.916
52 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.071 -22.260 -21.591 31.599
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 N -0.337 5.337
3 C -0.388 4.388
4 H 0.078 0.922
5 C -0.249 4.249
6 N -0.585 5.585
7 Si 0.792 3.208
8 H -0.207 1.207
9 H -0.217 1.217
10 H -0.205 1.205
11 C 0.029 3.971
12 C -0.125 4.125
13 H 0.055 0.945
14 C -0.145 4.145
15 C -0.165 4.165
16 C -0.014 4.014
17 N -0.334 5.334
18 C 0.324 3.676
19 O -0.473 6.473
20 C -0.193 4.193
21 H 0.170 0.830
22 C -0.167 4.167
23 C -0.108 4.108
24 H 0.118 0.882
25 C -0.063 4.063
26 C -0.142 4.142
27 C -0.139 4.139
28 C -0.148 4.148
29 C -0.144 4.144
30 C -0.148 4.148
31 C 0.001 3.999
32 H 0.016 0.984
33 H 0.031 0.969
34 H 0.059 0.941
35 H 0.057 0.943
36 H 0.074 0.926
37 H 0.050 0.950
38 H 0.071 0.929
39 H 0.090 0.910
40 H 0.069 0.931
41 H 0.117 0.883
42 H 0.129 0.871
43 H 0.107 0.893
44 H 0.108 0.892
45 H 0.157 0.843
46 H 0.160 0.840
47 H 0.163 0.837
48 H 0.160 0.840
49 H 0.155 0.845
50 H 0.136 0.864
51 H 0.102 0.898
52 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 6.455 -22.031 -21.156 31.219
hybrid contribution 0.468 1.547 0.752 1.783
sum 6.924 -20.484 -20.404 29.730
Atomic orbital electron populations
1.20592 0.82399 0.96167 0.97273 1.44043 1.02207 1.01297 1.86182
1.19377 0.97035 0.86773 1.35648 0.92182 1.25686 0.98589 1.01483
0.99131 1.70224 1.19487 1.27225 1.41523 0.85389 0.77603 0.79942
0.77817 1.20667 1.21698 1.20541 1.20818 0.95223 0.87195 0.93870
1.21991 0.96616 0.95386 0.98511 0.94453 1.21532 0.95968 1.01103
0.95906 1.21885 1.00917 0.97340 0.96361 1.22061 0.84157 0.97932
0.97298 1.48163 1.06525 1.64643 1.14067 1.20271 0.82426 0.76468
0.88474 1.90664 1.37665 1.54751 1.64262 1.22348 0.99684 1.06254
0.91030 0.82990 1.23226 1.00656 0.94034 0.98796 1.20966 0.93674
0.96306 0.99827 0.88152 1.19142 0.97814 0.94457 0.94891 1.21303
0.99911 0.99536 0.93420 1.21468 0.98509 0.93853 1.00087 1.21509
0.96584 0.99496 0.97175 1.21394 1.00082 0.98334 0.94553 1.21174
0.99002 0.94554 1.00092 1.21581 1.00066 0.95716 0.82548 0.98381
0.96862 0.94076 0.94289 0.92621 0.94970 0.92916 0.91000 0.93150
0.88252 0.87108 0.89278 0.89159 0.84270 0.84040 0.83702 0.84033
0.84548 0.86420 0.89798 0.91847
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.84 7.86 127.77 1.00 9.84 16
2 N -0.61 -31.08 2.75 -726.94 -2.00 -33.08 16
3 C -0.26 -14.63 9.67 84.03 0.81 -13.81 16
4 H 0.06 3.41 7.86 -2.91 -0.02 3.39 16
5 C -0.05 -3.12 5.10 84.86 0.43 -2.68 16
6 N -0.94 -56.44 10.61 21.65 0.23 -56.21 16
7 Si 0.96 46.59 29.57 68.60 2.03 48.62 16
8 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16
9 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16
11 C 0.16 6.36 5.14 86.38 0.44 6.81 16
12 C -0.10 -3.53 2.56 -10.57 -0.03 -3.56 16
13 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
14 C -0.11 -3.06 4.21 30.62 0.13 -2.93 16
15 C -0.13 -2.65 6.08 30.67 0.19 -2.46 16
16 C 0.11 1.84 6.29 86.36 0.54 2.38 16
17 N -0.60 -15.37 2.97 -818.04 -2.43 -17.79 16
18 C 0.53 14.94 7.48 87.66 0.66 15.60 16
19 O -0.59 -22.05 15.67 -3.04 -0.05 -22.10 16
20 C -0.17 -3.27 4.59 -11.54 -0.05 -3.33 16
21 H 0.15 2.02 6.82 -2.39 -0.02 2.00 16
22 C -0.13 -2.15 9.56 30.59 0.29 -1.85 16
23 C -0.09 -1.75 5.55 -11.54 -0.06 -1.82 16
24 H 0.10 2.49 7.67 -2.39 -0.02 2.48 16
25 C -0.06 -1.08 5.61 -19.87 -0.11 -1.19 16
26 C -0.12 -1.62 9.29 22.27 0.21 -1.41 16
27 C -0.12 -1.36 10.05 22.27 0.22 -1.14 16
28 C -0.13 -1.51 10.05 22.27 0.22 -1.28 16
29 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16
30 C -0.13 -2.25 9.74 22.27 0.22 -2.04 16
31 C 0.12 3.71 5.75 86.51 0.50 4.21 16
32 H 0.00 -0.11 7.38 -2.39 -0.02 -0.13 16
33 H 0.01 0.69 7.22 -2.39 -0.02 0.67 16
34 H 0.04 1.65 6.20 -2.38 -0.01 1.64 16
35 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16
36 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16
37 H 0.03 1.39 8.04 -2.38 -0.02 1.37 16
38 H 0.05 1.81 5.87 -2.39 -0.01 1.80 16
39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16
40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16
41 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
42 H 0.11 1.29 5.67 -2.38 -0.01 1.28 16
43 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16
44 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16
45 H 0.14 1.40 6.18 -2.39 -0.01 1.38 16
46 H 0.14 1.23 6.03 -2.91 -0.02 1.22 16
47 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16
48 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16
49 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16
50 H 0.12 2.04 8.06 -2.91 -0.02 2.01 16
51 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
52 H 0.06 2.23 7.00 -2.39 -0.02 2.22 16
Total: -1.00 -74.07 405.11 4.52 -69.55
By element:
Atomic # 1 Polarization: 12.29 SS G_CDS: 0.90 Total: 13.19 kcal
Atomic # 6 Polarization: -8.02 SS G_CDS: 5.84 Total: -2.18 kcal
Atomic # 7 Polarization: -102.88 SS G_CDS: -4.20 Total: -107.07 kcal
Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.10 kcal
Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal
Total: -74.07 4.52 -69.55 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001661227050.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.639 kcal
(2) G-P(sol) polarization free energy of solvation -74.073 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.566 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.087 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds