Wall clock time and date at job start Sat Apr 11 2020 06:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00280 * 2 1 4 4 C 1.53004 * 109.47022 * 275.68752 * 3 2 1 5 5 H 1.08996 * 112.96696 * 66.96635 * 4 3 2 6 6 C 1.53938 * 113.76920 * 295.28804 * 4 3 2 7 7 C 1.53942 * 86.29169 * 222.09301 * 6 4 3 8 8 N 1.47583 * 86.11801 * 23.60681 * 7 6 4 9 9 C 1.36933 * 134.49318 * 155.36232 * 8 7 6 10 10 H 1.08001 * 119.99898 * 180.02562 * 9 8 7 11 11 C 1.38811 * 120.00132 * 0.07133 * 9 8 7 12 12 N 1.31615 * 119.99915 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99991 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47172 * 89.99722 * 13 11 9 15 15 H 1.48497 * 109.46896 * 210.00018 * 13 11 9 16 16 H 1.48502 * 109.46842 * 329.99731 * 13 11 9 17 17 C 1.34785 * 120.00036 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99889 * 179.97438 * 17 2 1 19 19 C 1.50698 * 119.99817 * 0.02562 * 17 2 1 20 20 C 1.53000 * 109.46800 * 179.97438 * 19 17 2 21 21 H 1.09003 * 109.70922 * 305.53686 * 20 19 17 22 22 C 1.53321 * 109.67928 * 184.99987 * 20 19 17 23 23 C 1.52734 * 108.43212 * 170.43747 * 22 20 19 24 24 C 1.50630 * 110.60040 * 51.02691 * 23 22 20 25 25 C 1.38916 * 117.75747 * 162.33592 * 24 23 22 26 26 C 1.37931 * 120.54442 * 179.70449 * 25 24 23 27 27 C 1.38263 * 119.77315 * 359.97438 * 26 25 24 28 28 C 1.37934 * 119.77279 * 0.13038 * 27 26 25 29 29 C 1.37667 * 122.56370 * 342.27180 * 24 23 22 30 30 C 1.50631 * 122.56011 * 0.74379 * 29 24 23 31 31 H 1.09001 * 109.46991 * 264.55085 * 1 2 3 32 32 H 1.09005 * 109.47399 * 24.54820 * 1 2 3 33 33 H 1.09000 * 109.47511 * 144.54939 * 1 2 3 34 34 H 1.09003 * 109.46864 * 35.68264 * 3 2 1 35 35 H 1.08999 * 109.47474 * 155.68458 * 3 2 1 36 36 H 1.09007 * 113.74414 * 336.44021 * 6 4 3 37 37 H 1.09000 * 113.74423 * 107.64092 * 6 4 3 38 38 H 1.09000 * 113.77158 * 137.90790 * 7 6 4 39 39 H 1.09003 * 113.77066 * 269.30771 * 7 6 4 40 40 H 0.96997 * 119.99656 * 179.97438 * 12 11 9 41 41 H 1.09002 * 109.47186 * 59.99812 * 19 17 2 42 42 H 1.08997 * 109.47174 * 300.00000 * 19 17 2 43 43 H 1.09004 * 109.68249 * 50.69239 * 22 20 19 44 44 H 1.09002 * 109.68048 * 290.18656 * 22 20 19 45 45 H 1.09003 * 109.25021 * 171.31446 * 23 22 20 46 46 H 1.09007 * 109.25119 * 290.77181 * 23 22 20 47 47 H 1.07996 * 119.72215 * 359.70911 * 25 24 23 48 48 H 1.07995 * 120.11227 * 180.02562 * 26 25 24 49 49 H 1.08005 * 120.11061 * 180.10595 * 27 26 25 50 50 H 1.08003 * 119.72926 * 180.02562 * 28 27 26 51 51 H 1.09004 * 109.25402 * 102.44266 * 30 29 24 52 52 H 1.09004 * 109.25591 * 221.90571 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3287 1.7818 -1.4354 5 1 1.3730 2.0699 -1.8732 6 6 3.1787 0.8747 -2.3434 7 6 3.7980 2.1729 -2.8919 8 7 3.3941 2.7877 -1.6125 9 6 3.8319 3.8605 -0.8828 10 1 3.3521 4.1096 0.0522 11 6 4.8917 4.6284 -1.3453 12 7 5.4761 4.3251 -2.4849 13 14 5.4894 6.0915 -0.3494 14 1 6.5464 5.6489 0.5951 15 1 6.0435 7.1206 -1.2655 16 1 4.3535 6.6681 0.4137 17 6 2.1389 -1.1673 0.0005 18 8 3.3517 -1.1672 0.0001 19 6 1.3854 -2.4723 0.0005 20 6 2.3796 -3.6352 0.0005 21 1 3.0718 -3.5270 -0.8345 22 6 1.6221 -4.9622 -0.1253 23 6 2.6380 -6.0777 -0.3628 24 6 3.7353 -6.0233 0.6677 25 6 4.5214 -7.1563 0.8361 26 6 5.5460 -7.1676 1.7594 27 6 5.7939 -6.0424 2.5238 28 6 5.0132 -4.9172 2.3596 29 6 3.9788 -4.9049 1.4326 30 6 3.1578 -3.6475 1.3144 31 1 -0.3633 -0.0976 1.0230 32 1 -0.3634 0.9348 -0.4270 33 1 -0.3634 -0.8371 -0.5960 34 1 1.6563 2.0007 0.5995 35 1 3.1902 1.1151 0.4231 36 1 3.8849 0.2472 -1.7995 37 1 2.5959 0.3197 -3.0785 38 1 4.8776 2.1196 -3.0322 39 1 3.2746 2.5775 -3.7583 40 1 6.2165 4.8620 -2.8082 41 1 0.7590 -2.5303 -0.8897 42 1 0.7584 -2.5299 0.8902 43 1 0.9296 -4.9115 -0.9656 44 1 1.0699 -5.1583 0.7938 45 1 2.1340 -7.0421 -0.3005 46 1 3.0724 -5.9627 -1.3559 47 1 4.3286 -8.0353 0.2391 48 1 6.1531 -8.0520 1.8843 49 1 6.5960 -6.0447 3.2471 50 1 5.2077 -4.0386 2.9568 51 1 2.4566 -3.5964 2.1474 52 1 3.8194 -2.7818 1.3479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688895320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:47:11 Heat of formation + Delta-G solvation = 30.355581 kcal Electronic energy + Delta-G solvation = -30089.331960 eV Core-core repulsion = 26247.683459 eV Total energy + Delta-G solvation = -3841.648501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.45230 -39.56351 -37.74140 -36.43322 -35.11528 -32.85669 -32.11524 -31.58380 -29.49129 -28.67154 -27.75414 -27.13775 -25.92824 -23.73639 -23.21175 -22.62812 -22.22431 -21.55330 -19.44852 -19.01015 -18.74852 -16.96493 -16.65845 -16.30592 -16.02586 -15.92284 -15.39097 -15.10892 -14.68311 -14.48186 -14.11107 -14.05498 -13.75124 -13.63322 -13.32153 -13.09631 -13.05170 -12.83297 -12.58256 -12.35948 -12.30222 -12.05010 -11.85709 -11.75413 -11.53811 -11.38872 -11.27640 -10.97590 -10.86662 -10.78978 -10.63633 -10.58668 -10.40311 -10.37120 -9.78604 -9.65258 -9.52796 -9.30909 -8.83001 -8.71965 -8.59859 -8.25456 -6.78878 -5.68431 -3.00682 1.28398 1.30584 2.89313 3.22316 3.43411 3.47565 3.49621 3.66693 4.42467 4.47324 4.52249 4.58905 4.79822 4.86353 4.92531 4.94336 5.04908 5.11802 5.21493 5.28583 5.30531 5.33080 5.39554 5.43144 5.51522 5.54172 5.55900 5.60441 5.66804 5.70313 5.71943 5.78380 5.85691 5.94102 5.97048 6.00735 6.03427 6.18359 6.25560 6.32367 6.41131 6.44246 6.45197 6.62424 6.63926 6.79638 6.82828 6.88270 6.95432 7.35527 7.55735 7.68987 7.69978 8.07360 8.48391 9.12060 9.78958 10.69821 11.48514 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.002496 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.258184 B =11215.055677 C =12206.759413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.612 5.612 3 C 0.115 3.885 4 C 0.129 3.871 5 H 0.039 0.961 6 C -0.157 4.157 7 C 0.160 3.840 8 N -0.601 5.601 9 C -0.221 4.221 10 H 0.077 0.923 11 C -0.008 4.008 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.509 3.491 18 O -0.526 6.526 19 C -0.134 4.134 20 C -0.070 4.070 21 H 0.084 0.916 22 C -0.115 4.115 23 C -0.079 4.079 24 C -0.080 4.080 25 C -0.123 4.123 26 C -0.128 4.128 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.064 4.064 30 C -0.083 4.083 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.022 0.978 40 H 0.252 0.748 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.068 0.932 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.861 -23.401 6.772 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.346 5.346 3 C -0.008 4.008 4 C 0.021 3.979 5 H 0.056 0.944 6 C -0.195 4.195 7 C 0.035 3.965 8 N -0.327 5.327 9 C -0.349 4.349 10 H 0.095 0.905 11 C -0.205 4.205 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.296 3.704 18 O -0.403 6.403 19 C -0.174 4.174 20 C -0.089 4.089 21 H 0.103 0.897 22 C -0.152 4.152 23 C -0.116 4.116 24 C -0.080 4.080 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.137 4.137 29 C -0.064 4.064 30 C -0.119 4.119 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.087 0.913 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.000 -23.090 6.836 26.075 hybrid contribution 0.176 1.042 0.458 1.152 sum -9.825 -22.048 7.294 25.216 Atomic orbital electron populations 1.21748 0.80263 1.03204 1.01188 1.47860 1.06563 1.06630 1.73521 1.21805 0.97801 0.82589 0.98601 1.22498 0.92743 0.89583 0.93076 0.94375 1.23806 0.99491 0.97580 0.98604 1.22184 0.99777 0.86542 0.88014 1.45946 1.34086 1.31350 1.21325 1.18970 1.11765 1.02871 1.01279 0.90476 1.24767 0.98836 0.99514 0.97353 1.69835 1.25405 1.40823 1.20641 0.86163 0.78671 0.82231 0.78946 1.21550 1.21718 1.20786 1.20578 0.88241 0.85164 0.76377 1.90699 1.13763 1.86980 1.48809 1.21774 0.99112 0.92531 1.03965 1.20894 0.96367 0.92439 0.99221 0.89743 1.21621 0.97411 0.94125 1.02050 1.20450 0.94406 0.99204 0.97527 1.19629 0.97495 0.93279 0.97636 1.21119 0.96193 0.97851 0.98936 1.21013 0.98226 0.98361 0.97022 1.21059 0.99675 0.93539 0.99898 1.21222 0.95525 0.98404 0.98570 1.19705 0.96267 0.94943 0.95513 1.20677 0.98561 0.95730 0.96962 0.92973 0.90783 0.91564 0.91780 0.88871 0.89530 0.94169 0.91032 0.96023 0.93742 0.88928 0.89265 0.91283 0.91649 0.90929 0.90553 0.86474 0.86413 0.86306 0.86150 0.91319 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.16 59.84 0.61 1.36 16 2 N -0.61 -8.58 2.79 -181.57 -0.51 -9.09 16 3 C 0.12 2.10 5.38 -4.04 -0.02 2.07 16 4 C 0.13 2.69 4.58 -66.86 -0.31 2.39 16 5 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 6 C -0.16 -3.29 7.25 -25.81 -0.19 -3.48 16 7 C 0.16 4.03 7.51 -2.98 -0.02 4.01 16 8 N -0.60 -15.86 3.57 -170.75 -0.61 -16.47 16 9 C -0.22 -6.31 10.51 -15.06 -0.16 -6.47 16 10 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -28.21 11.39 55.49 0.63 -27.58 16 13 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.51 7.27 7.01 -10.98 -0.08 7.20 16 18 O -0.53 -9.70 12.01 5.56 0.07 -9.63 16 19 C -0.13 -1.30 3.80 -27.88 -0.11 -1.40 16 20 C -0.07 -0.73 1.84 -90.60 -0.17 -0.90 16 21 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 22 C -0.11 -0.91 5.28 -26.70 -0.14 -1.05 16 23 C -0.08 -0.66 5.68 -28.05 -0.16 -0.82 16 24 C -0.08 -0.85 5.74 -104.61 -0.60 -1.45 16 25 C -0.12 -1.21 9.61 -39.44 -0.38 -1.59 16 26 C -0.13 -1.24 10.05 -39.68 -0.40 -1.64 16 27 C -0.12 -1.28 10.05 -39.68 -0.40 -1.68 16 28 C -0.12 -1.38 9.61 -39.45 -0.38 -1.76 16 29 C -0.06 -0.76 5.74 -104.62 -0.60 -1.36 16 30 C -0.08 -0.96 4.63 -28.07 -0.13 -1.09 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 33 H 0.07 0.48 6.67 -51.93 -0.35 0.13 16 34 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.09 2.00 7.26 -51.93 -0.38 1.63 16 36 H 0.09 1.96 6.56 -51.92 -0.34 1.62 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 2.00 7.16 -51.93 -0.37 1.63 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.09 0.73 7.41 -51.93 -0.38 0.35 16 42 H 0.09 0.69 8.07 -51.93 -0.42 0.27 16 43 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 44 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 45 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.12 0.90 8.05 -52.49 -0.42 0.48 16 48 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 50 H 0.12 1.29 8.05 -52.48 -0.42 0.87 16 51 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 52 H 0.10 1.40 6.23 -51.93 -0.32 1.07 16 LS Contribution 405.46 15.07 6.11 6.11 Total: -1.00 -34.14 405.46 -11.90 -46.03 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.85 Total: 0.96 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.72 Total: -7.99 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.48 Total: -53.14 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.14 -11.90 -46.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688895320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.389 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds