Wall clock time and date at job start Sat Apr 11 2020 06:47:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.46499 * 120.00280 * 2 1
4 4 C 1.53004 * 109.47022 * 275.68752 * 3 2 1
5 5 H 1.08996 * 112.96696 * 66.96635 * 4 3 2
6 6 C 1.53938 * 113.76920 * 295.28804 * 4 3 2
7 7 C 1.53942 * 86.29169 * 222.09301 * 6 4 3
8 8 N 1.47583 * 86.11801 * 23.60681 * 7 6 4
9 9 C 1.36933 * 134.49318 * 155.36232 * 8 7 6
10 10 H 1.08001 * 119.99898 * 180.02562 * 9 8 7
11 11 C 1.38811 * 120.00132 * 0.07133 * 9 8 7
12 12 N 1.31615 * 119.99915 * 359.97438 * 11 9 8
13 13 Si 1.86804 * 119.99991 * 180.02562 * 11 9 8
14 14 H 1.48500 * 109.47172 * 89.99722 * 13 11 9
15 15 H 1.48497 * 109.46896 * 210.00018 * 13 11 9
16 16 H 1.48502 * 109.46842 * 329.99731 * 13 11 9
17 17 C 1.34785 * 120.00036 * 179.97438 * 2 1 3
18 18 O 1.21278 * 119.99889 * 179.97438 * 17 2 1
19 19 C 1.50698 * 119.99817 * 0.02562 * 17 2 1
20 20 C 1.53000 * 109.46800 * 179.97438 * 19 17 2
21 21 H 1.09003 * 109.70922 * 305.53686 * 20 19 17
22 22 C 1.53321 * 109.67928 * 184.99987 * 20 19 17
23 23 C 1.52734 * 108.43212 * 170.43747 * 22 20 19
24 24 C 1.50630 * 110.60040 * 51.02691 * 23 22 20
25 25 C 1.38916 * 117.75747 * 162.33592 * 24 23 22
26 26 C 1.37931 * 120.54442 * 179.70449 * 25 24 23
27 27 C 1.38263 * 119.77315 * 359.97438 * 26 25 24
28 28 C 1.37934 * 119.77279 * 0.13038 * 27 26 25
29 29 C 1.37667 * 122.56370 * 342.27180 * 24 23 22
30 30 C 1.50631 * 122.56011 * 0.74379 * 29 24 23
31 31 H 1.09001 * 109.46991 * 264.55085 * 1 2 3
32 32 H 1.09005 * 109.47399 * 24.54820 * 1 2 3
33 33 H 1.09000 * 109.47511 * 144.54939 * 1 2 3
34 34 H 1.09003 * 109.46864 * 35.68264 * 3 2 1
35 35 H 1.08999 * 109.47474 * 155.68458 * 3 2 1
36 36 H 1.09007 * 113.74414 * 336.44021 * 6 4 3
37 37 H 1.09000 * 113.74423 * 107.64092 * 6 4 3
38 38 H 1.09000 * 113.77158 * 137.90790 * 7 6 4
39 39 H 1.09003 * 113.77066 * 269.30771 * 7 6 4
40 40 H 0.96997 * 119.99656 * 179.97438 * 12 11 9
41 41 H 1.09002 * 109.47186 * 59.99812 * 19 17 2
42 42 H 1.08997 * 109.47174 * 300.00000 * 19 17 2
43 43 H 1.09004 * 109.68249 * 50.69239 * 22 20 19
44 44 H 1.09002 * 109.68048 * 290.18656 * 22 20 19
45 45 H 1.09003 * 109.25021 * 171.31446 * 23 22 20
46 46 H 1.09007 * 109.25119 * 290.77181 * 23 22 20
47 47 H 1.07996 * 119.72215 * 359.70911 * 25 24 23
48 48 H 1.07995 * 120.11227 * 180.02562 * 26 25 24
49 49 H 1.08005 * 120.11061 * 180.10595 * 27 26 25
50 50 H 1.08003 * 119.72926 * 180.02562 * 28 27 26
51 51 H 1.09004 * 109.25402 * 102.44266 * 30 29 24
52 52 H 1.09004 * 109.25591 * 221.90571 * 30 29 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.3287 1.7818 -1.4354
5 1 1.3730 2.0699 -1.8732
6 6 3.1787 0.8747 -2.3434
7 6 3.7980 2.1729 -2.8919
8 7 3.3941 2.7877 -1.6125
9 6 3.8319 3.8605 -0.8828
10 1 3.3521 4.1096 0.0522
11 6 4.8917 4.6284 -1.3453
12 7 5.4761 4.3251 -2.4849
13 14 5.4894 6.0915 -0.3494
14 1 6.5464 5.6489 0.5951
15 1 6.0435 7.1206 -1.2655
16 1 4.3535 6.6681 0.4137
17 6 2.1389 -1.1673 0.0005
18 8 3.3517 -1.1672 0.0001
19 6 1.3854 -2.4723 0.0005
20 6 2.3796 -3.6352 0.0005
21 1 3.0718 -3.5270 -0.8345
22 6 1.6221 -4.9622 -0.1253
23 6 2.6380 -6.0777 -0.3628
24 6 3.7353 -6.0233 0.6677
25 6 4.5214 -7.1563 0.8361
26 6 5.5460 -7.1676 1.7594
27 6 5.7939 -6.0424 2.5238
28 6 5.0132 -4.9172 2.3596
29 6 3.9788 -4.9049 1.4326
30 6 3.1578 -3.6475 1.3144
31 1 -0.3633 -0.0976 1.0230
32 1 -0.3634 0.9348 -0.4270
33 1 -0.3634 -0.8371 -0.5960
34 1 1.6563 2.0007 0.5995
35 1 3.1902 1.1151 0.4231
36 1 3.8849 0.2472 -1.7995
37 1 2.5959 0.3197 -3.0785
38 1 4.8776 2.1196 -3.0322
39 1 3.2746 2.5775 -3.7583
40 1 6.2165 4.8620 -2.8082
41 1 0.7590 -2.5303 -0.8897
42 1 0.7584 -2.5299 0.8902
43 1 0.9296 -4.9115 -0.9656
44 1 1.0699 -5.1583 0.7938
45 1 2.1340 -7.0421 -0.3005
46 1 3.0724 -5.9627 -1.3559
47 1 4.3286 -8.0353 0.2391
48 1 6.1531 -8.0520 1.8843
49 1 6.5960 -6.0447 3.2471
50 1 5.2077 -4.0386 2.9568
51 1 2.4566 -3.5964 2.1474
52 1 3.8194 -2.7818 1.3479
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001688895320.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:10
Heat of formation + Delta-G solvation = 12.162960 kcal
Electronic energy + Delta-G solvation = -30090.120851 eV
Core-core repulsion = 26247.683459 eV
Total energy + Delta-G solvation = -3842.437392 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.39351 -40.61811 -39.42076 -37.29573 -36.30598 -34.24527 -33.61298 -32.45199
-30.45044 -29.85908 -29.75530 -28.00394 -26.98888 -25.30446 -24.59180 -23.94623
-23.01568 -22.58055 -20.87329 -20.21774 -19.85448 -18.70683 -17.85108 -17.30602
-17.12357 -17.02585 -16.64241 -16.31210 -15.99083 -15.80865 -15.37097 -15.28983
-14.94471 -14.51910 -14.29212 -14.25354 -13.96926 -13.83017 -13.79009 -13.71744
-13.38471 -13.17703 -12.99725 -12.88678 -12.78186 -12.60691 -12.49660 -12.45804
-12.27027 -12.26274 -12.06069 -11.81401 -11.63599 -11.59052 -11.39049 -11.26966
-11.12038 -10.85928 -10.51236 -9.63342 -9.52628 -9.38423 -8.88638 -7.89292
-5.22692 0.48923 0.50418 1.42050 1.45674 1.53279 1.81937 2.10417
2.49355 2.87212 3.30772 3.41679 3.63896 3.73683 3.80837 3.92518
4.04905 4.11335 4.16867 4.20713 4.25425 4.32866 4.36728 4.42906
4.47211 4.53198 4.56673 4.61949 4.68874 4.71480 4.78603 4.83056
4.84193 4.86905 4.94824 5.02082 5.04157 5.04804 5.10137 5.14515
5.16581 5.16955 5.24352 5.27188 5.42914 5.52537 5.55300 5.61592
5.64055 5.65976 5.77412 5.83565 5.95155 6.18602 6.60532 6.91388
7.40382 7.61952 8.58496 9.28177
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.014002 B = 0.002496 C = 0.002293
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1999.258184 B =11215.055677 C =12206.759413
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.612 5.612
3 C 0.130 3.870
4 C 0.137 3.863
5 H 0.061 0.939
6 C -0.130 4.130
7 C 0.154 3.846
8 N -0.631 5.631
9 C -0.226 4.226
10 H 0.086 0.914
11 C -0.075 4.075
12 N -0.958 5.958
13 Si 0.978 3.022
14 H -0.289 1.289
15 H -0.294 1.294
16 H -0.264 1.264
17 C 0.499 3.501
18 O -0.578 6.578
19 C -0.121 4.121
20 C -0.068 4.068
21 H 0.053 0.947
22 C -0.106 4.106
23 C -0.080 4.080
24 C -0.090 4.090
25 C -0.129 4.129
26 C -0.133 4.133
27 C -0.135 4.135
28 C -0.144 4.144
29 C -0.087 4.087
30 C -0.077 4.077
31 H 0.073 0.927
32 H 0.074 0.926
33 H 0.098 0.902
34 H 0.075 0.925
35 H 0.050 0.950
36 H 0.065 0.935
37 H 0.073 0.927
38 H 0.032 0.968
39 H 0.021 0.979
40 H 0.246 0.754
41 H 0.124 0.876
42 H 0.119 0.881
43 H 0.093 0.907
44 H 0.076 0.924
45 H 0.095 0.905
46 H 0.075 0.925
47 H 0.142 0.858
48 H 0.142 0.858
49 H 0.133 0.867
50 H 0.113 0.887
51 H 0.078 0.922
52 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.289 -25.506 7.301 30.134
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.345 5.345
3 C 0.005 3.995
4 C 0.031 3.969
5 H 0.079 0.921
6 C -0.168 4.168
7 C 0.028 3.972
8 N -0.358 5.358
9 C -0.354 4.354
10 H 0.104 0.896
11 C -0.267 4.267
12 N -0.607 5.607
13 Si 0.806 3.194
14 H -0.217 1.217
15 H -0.221 1.221
16 H -0.188 1.188
17 C 0.289 3.711
18 O -0.458 6.458
19 C -0.161 4.161
20 C -0.087 4.087
21 H 0.072 0.928
22 C -0.143 4.143
23 C -0.117 4.117
24 C -0.090 4.090
25 C -0.147 4.147
26 C -0.151 4.151
27 C -0.153 4.153
28 C -0.162 4.162
29 C -0.087 4.087
30 C -0.114 4.114
31 H 0.092 0.908
32 H 0.093 0.907
33 H 0.116 0.884
34 H 0.094 0.906
35 H 0.068 0.932
36 H 0.084 0.916
37 H 0.092 0.908
38 H 0.051 0.949
39 H 0.038 0.962
40 H 0.055 0.945
41 H 0.142 0.858
42 H 0.137 0.863
43 H 0.112 0.888
44 H 0.095 0.905
45 H 0.113 0.887
46 H 0.093 0.907
47 H 0.160 0.840
48 H 0.160 0.840
49 H 0.151 0.849
50 H 0.131 0.869
51 H 0.096 0.904
52 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -13.506 -25.224 7.389 29.551
hybrid contribution 1.253 1.618 0.309 2.069
sum -12.253 -23.606 7.698 27.688
Atomic orbital electron populations
1.22092 0.76816 1.04723 1.03349 1.47935 1.08496 1.04841 1.73190
1.21291 0.96693 0.85030 0.96466 1.22663 0.92123 0.87354 0.94797
0.92150 1.23482 0.98902 0.95773 0.98635 1.22115 0.97718 0.89162
0.88167 1.46312 1.36064 1.31758 1.21647 1.19404 1.11467 1.02941
1.01620 0.89606 1.25669 0.99525 1.02759 0.98727 1.70043 1.26047
1.42082 1.22561 0.85081 0.78325 0.78638 0.77336 1.21663 1.22094
1.18823 1.21529 0.87945 0.86583 0.75002 1.90701 1.16414 1.87733
1.50919 1.21815 0.98687 0.88831 1.06727 1.20843 0.96248 0.94547
0.97044 0.92799 1.21596 0.97226 0.91894 1.03608 1.20537 0.94009
1.00633 0.96532 1.19975 0.98355 0.92995 0.97703 1.21484 0.95805
0.98441 0.98967 1.21368 0.98388 0.98815 0.96492 1.21314 0.99921
0.93498 1.00523 1.21380 0.96544 0.98928 0.99327 1.19883 0.96828
0.95645 0.96376 1.20567 0.98250 0.94256 0.98345 0.90818 0.90681
0.88359 0.90627 0.93159 0.91627 0.90809 0.94942 0.96164 0.94472
0.85824 0.86306 0.88850 0.90535 0.88681 0.90707 0.84039 0.84032
0.84869 0.86872 0.90364 0.92337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.05 10.16 127.77 1.30 2.35 16
2 N -0.61 -15.97 2.79 -846.75 -2.36 -18.32 16
3 C 0.13 4.69 5.38 86.38 0.46 5.15 16
4 C 0.14 5.64 4.58 45.09 0.21 5.85 16
5 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
6 C -0.13 -5.49 7.25 31.25 0.23 -5.26 16
7 C 0.15 8.04 7.51 86.48 0.65 8.69 16
8 N -0.63 -34.04 3.57 -694.12 -2.48 -36.53 16
9 C -0.23 -13.14 10.51 84.03 0.88 -12.25 16
10 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16
11 C -0.07 -4.46 5.50 84.86 0.47 -3.99 16
12 N -0.96 -61.19 11.39 21.65 0.25 -60.94 16
13 Si 0.98 47.72 29.55 68.60 2.03 49.75 16
14 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16
15 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16
16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16
17 C 0.50 13.79 7.01 87.66 0.61 14.41 16
18 O -0.58 -22.31 12.01 -3.02 -0.04 -22.34 16
19 C -0.12 -1.97 3.80 29.85 0.11 -1.86 16
20 C -0.07 -1.32 1.84 -10.78 -0.02 -1.34 16
21 H 0.05 1.38 7.90 -2.39 -0.02 1.36 16
22 C -0.11 -1.33 5.28 30.61 0.16 -1.17 16
23 C -0.08 -1.15 5.68 29.74 0.17 -0.98 16
24 C -0.09 -1.82 5.74 -19.86 -0.11 -1.94 16
25 C -0.13 -2.32 9.61 22.36 0.21 -2.11 16
26 C -0.13 -2.42 10.05 22.20 0.22 -2.20 16
27 C -0.13 -2.81 10.05 22.20 0.22 -2.59 16
28 C -0.14 -3.52 9.61 22.36 0.21 -3.31 16
29 C -0.09 -2.10 5.74 -19.86 -0.11 -2.22 16
30 C -0.08 -1.83 4.63 29.73 0.14 -1.70 16
31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16
32 H 0.07 1.13 8.03 -2.38 -0.02 1.11 16
33 H 0.10 0.85 6.67 -2.39 -0.02 0.84 16
34 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16
35 H 0.05 2.25 7.26 -2.39 -0.02 2.24 16
36 H 0.07 3.09 6.56 -2.38 -0.02 3.07 16
37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16
38 H 0.03 1.92 7.16 -2.39 -0.02 1.90 16
39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16
40 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16
41 H 0.12 1.30 7.41 -2.39 -0.02 1.29 16
42 H 0.12 1.30 8.07 -2.39 -0.02 1.28 16
43 H 0.09 0.76 8.12 -2.38 -0.02 0.74 16
44 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16
45 H 0.09 0.95 8.12 -2.39 -0.02 0.93 16
46 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16
47 H 0.14 1.77 8.05 -2.91 -0.02 1.75 16
48 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16
49 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16
50 H 0.11 2.75 8.05 -2.91 -0.02 2.72 16
51 H 0.08 1.61 8.09 -2.38 -0.02 1.59 16
52 H 0.06 1.84 6.23 -2.38 -0.01 1.83 16
Total: -1.00 -80.45 405.46 4.30 -76.15
By element:
Atomic # 1 Polarization: 17.79 SS G_CDS: 0.88 Total: 18.67 kcal
Atomic # 6 Polarization: -12.46 SS G_CDS: 6.02 Total: -6.44 kcal
Atomic # 7 Polarization: -111.20 SS G_CDS: -4.59 Total: -115.79 kcal
Atomic # 8 Polarization: -22.31 SS G_CDS: -0.04 Total: -22.34 kcal
Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal
Total: -80.45 4.30 -76.15 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001688895320.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.317 kcal
(2) G-P(sol) polarization free energy of solvation -80.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.862 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.163 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds