Wall clock time and date at job start Sat Apr 11 2020 06:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36932 * 119.99881 * 2 1 4 4 H 1.08000 * 120.00295 * 156.27351 * 3 2 1 5 5 C 1.38818 * 120.00179 * 336.27304 * 3 2 1 6 6 N 1.31621 * 119.99872 * 330.11135 * 5 3 2 7 7 Si 1.86788 * 120.00162 * 150.38481 * 5 3 2 8 8 H 1.48501 * 109.47299 * 179.72497 * 7 5 3 9 9 H 1.48507 * 109.47177 * 299.72683 * 7 5 3 10 10 H 1.48498 * 109.47236 * 59.72476 * 7 5 3 11 11 C 1.46499 * 120.00081 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46867 * 270.00066 * 11 2 1 13 13 C 1.53003 * 109.46897 * 180.02562 * 12 11 2 14 14 C 1.53041 * 109.45842 * 295.02383 * 13 12 11 15 15 C 1.53192 * 109.31206 * 178.60137 * 14 13 12 16 16 N 1.46926 * 108.76331 * 54.66067 * 15 14 13 17 17 C 1.34775 * 120.63426 * 126.36594 * 16 15 14 18 18 O 1.21285 * 120.00019 * 180.02562 * 17 16 15 19 19 C 1.50696 * 119.99910 * 0.02562 * 17 16 15 20 20 H 1.09009 * 112.83000 * 311.11553 * 19 17 16 21 21 C 1.53520 * 113.58839 * 180.02562 * 19 17 16 22 22 C 1.51605 * 87.24628 * 245.40687 * 21 19 17 23 23 C 1.38377 * 147.52954 * 179.97438 * 22 21 19 24 24 C 1.38090 * 120.32833 * 179.97438 * 23 22 21 25 25 C 1.38243 * 119.95706 * 0.03996 * 24 23 22 26 26 C 1.38099 * 119.95382 * 359.97438 * 25 24 23 27 27 C 1.38370 * 120.32596 * 0.02562 * 26 25 24 28 28 C 1.46931 * 118.73747 * 306.38167 * 16 15 14 29 29 C 1.53039 * 109.45846 * 174.97327 * 13 12 11 30 30 H 1.08997 * 109.47043 * 92.93685 * 1 2 3 31 31 H 1.09005 * 109.46902 * 212.93297 * 1 2 3 32 32 H 1.08996 * 109.47280 * 332.93522 * 1 2 3 33 33 H 0.97005 * 119.99733 * 354.89598 * 6 5 3 34 34 H 1.09002 * 109.47193 * 29.99696 * 11 2 1 35 35 H 1.08994 * 109.47415 * 149.99794 * 11 2 1 36 36 H 1.09002 * 109.46912 * 299.99802 * 12 11 2 37 37 H 1.09000 * 109.47413 * 60.00093 * 12 11 2 38 38 H 1.08992 * 109.46051 * 54.99679 * 13 12 11 39 39 H 1.08998 * 109.49865 * 298.56676 * 14 13 12 40 40 H 1.08996 * 109.50094 * 58.66337 * 14 13 12 41 41 H 1.08998 * 109.59952 * 294.87007 * 15 14 13 42 42 H 1.09002 * 109.70381 * 174.50369 * 15 14 13 43 43 H 1.09003 * 113.58946 * 0.02562 * 21 19 17 44 44 H 1.08998 * 113.58999 * 130.73495 * 21 19 17 45 45 H 1.07997 * 119.83584 * 0.03453 * 23 22 21 46 46 H 1.08006 * 120.02569 * 179.97438 * 24 23 22 47 47 H 1.08005 * 120.02743 * 180.02562 * 25 24 23 48 48 H 1.08003 * 119.83672 * 179.97438 * 26 25 24 49 49 H 1.09009 * 109.58289 * 293.82401 * 28 16 15 50 50 H 1.08998 * 109.58656 * 173.40178 * 28 16 15 51 51 H 1.08999 * 109.49895 * 301.33336 * 29 13 12 52 52 H 1.09006 * 109.50095 * 61.43167 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1612 1.2255 0.3763 5 6 1.5436 2.3373 -0.4837 6 7 0.6345 2.2538 -1.4319 7 14 2.0237 4.0056 0.2056 8 1 1.2421 5.0672 -0.4781 9 1 1.7373 4.0404 1.6623 10 1 3.4734 4.2356 -0.0194 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2181 -3.0357 1.4412 14 6 2.3412 -4.1310 0.8301 15 6 3.1235 -5.4478 0.7992 16 7 3.6020 -5.7453 2.1561 17 6 3.3334 -6.9328 2.7341 18 8 3.7337 -7.1660 3.8550 19 6 2.5358 -7.9709 1.9876 20 1 1.6224 -7.5681 1.5497 21 6 2.3163 -9.2657 2.7826 22 6 3.1657 -9.9641 1.7390 23 6 3.7338 -11.1456 1.2960 24 6 4.4946 -11.1645 0.1438 25 6 4.6920 -9.9986 -0.5723 26 6 4.1276 -8.8166 -0.1346 27 6 3.3644 -8.7921 1.0193 28 6 4.3786 -4.7233 2.8711 29 6 3.5825 -3.4146 2.8785 30 1 -0.3633 -0.0527 -1.0263 31 1 -0.3633 -0.8626 0.5587 32 1 -0.3633 0.9151 0.4676 33 1 0.4412 1.3974 -1.8444 34 1 1.6085 -2.0282 -0.5147 35 1 3.1499 -1.1382 -0.5143 36 1 3.0416 -0.9515 1.9559 37 1 1.5001 -1.8416 1.9556 38 1 4.1287 -2.9286 0.8519 39 1 1.4420 -4.2559 1.4333 40 1 2.0625 -3.8498 -0.1854 41 1 3.9741 -5.3520 0.1245 42 1 2.4739 -6.2532 0.4561 43 1 2.7682 -9.2505 3.7745 44 1 1.2785 -9.5986 2.7962 45 1 3.5806 -12.0576 1.8538 46 1 4.9360 -12.0893 -0.1973 47 1 5.2865 -10.0121 -1.4739 48 1 4.2834 -7.9068 -0.6953 49 1 5.3317 -4.5684 2.3653 50 1 4.5553 -5.0494 3.8961 51 1 4.1875 -2.6233 3.3211 52 1 2.6714 -3.5463 3.4622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698955366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:48:11 Heat of formation + Delta-G solvation = 37.910591 kcal Electronic energy + Delta-G solvation = -29645.070509 eV Core-core repulsion = 25803.749618 eV Total energy + Delta-G solvation = -3841.320891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.40650 -39.70846 -37.97771 -36.03525 -35.51554 -34.03467 -31.68829 -31.12502 -31.00104 -28.88318 -27.95068 -26.26590 -25.75612 -24.59194 -23.43550 -22.76005 -22.06212 -21.11629 -20.31455 -19.92034 -18.97215 -17.74116 -17.26054 -17.08222 -16.26164 -15.72105 -15.28736 -14.87239 -14.72827 -14.54339 -14.44504 -14.09121 -13.91500 -13.65451 -13.50730 -13.36251 -13.14205 -13.03449 -12.91604 -12.86412 -12.44402 -12.24088 -12.16569 -11.98724 -11.42875 -11.34732 -11.28615 -11.11777 -10.87554 -10.77139 -10.73035 -10.60922 -10.41695 -10.29455 -10.11039 -10.00098 -9.92032 -9.42100 -9.18826 -8.90589 -8.82804 -8.28806 -6.88595 -6.05817 -3.16810 0.90610 1.03498 2.31400 2.74515 3.39561 3.50412 3.54555 3.72240 3.76904 3.99496 4.05748 4.26534 4.60008 4.60992 4.69347 4.73162 4.80010 4.84534 4.85722 4.98184 5.15246 5.20434 5.23016 5.27140 5.34140 5.36060 5.41238 5.49868 5.55212 5.61015 5.61755 5.69416 5.72507 5.78278 5.85135 6.01879 6.02136 6.04456 6.13640 6.15528 6.21792 6.32218 6.35109 6.44355 6.47644 6.51729 6.60491 6.80421 6.83159 7.06123 7.10676 7.17060 7.91866 8.02180 8.59714 9.15611 9.89367 10.29507 11.22077 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.001994 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.683196 B =14037.977297 C =14520.910030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.607 5.607 3 C -0.357 4.357 4 H 0.056 0.944 5 C -0.023 4.023 6 N -0.911 5.911 7 Si 1.059 2.941 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.293 1.293 11 C 0.153 3.847 12 C -0.130 4.130 13 C -0.084 4.084 14 C -0.131 4.131 15 C 0.106 3.894 16 N -0.603 5.603 17 C 0.533 3.467 18 O -0.540 6.540 19 C -0.068 4.068 20 H 0.122 0.878 21 C -0.057 4.057 22 C -0.117 4.117 23 C -0.098 4.098 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.085 4.085 27 C -0.124 4.124 28 C 0.111 3.889 29 C -0.127 4.127 30 H 0.008 0.992 31 H 0.012 0.988 32 H 0.049 0.951 33 H 0.269 0.731 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.120 0.880 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.120 0.880 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.076 0.924 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -26.727 4.408 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.331 5.331 3 C -0.485 4.485 4 H 0.074 0.926 5 C -0.226 4.226 6 N -0.551 5.551 7 Si 0.889 3.111 8 H -0.212 1.212 9 H -0.222 1.222 10 H -0.220 1.220 11 C 0.026 3.974 12 C -0.170 4.170 13 C -0.104 4.104 14 C -0.169 4.169 15 C -0.017 4.017 16 N -0.336 5.336 17 C 0.321 3.679 18 O -0.417 6.417 19 C -0.089 4.089 20 H 0.139 0.861 21 C -0.094 4.094 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.103 4.103 27 C -0.125 4.125 28 C -0.011 4.011 29 C -0.166 4.166 30 H 0.026 0.974 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.138 0.862 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.138 0.862 49 H 0.085 0.915 50 H 0.108 0.892 51 H 0.094 0.906 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.419 -25.185 4.913 26.225 hybrid contribution 0.404 -1.518 -0.155 1.579 sum 5.823 -26.703 4.759 27.742 Atomic orbital electron populations 1.20922 0.84209 0.98387 0.97377 1.43945 1.00896 1.01612 1.86638 1.19879 1.00722 0.87138 1.40801 0.92605 1.25749 0.99086 1.01975 0.95773 1.70795 1.36303 1.28161 1.19865 0.83620 0.75420 0.76230 0.75873 1.21176 1.22156 1.22014 1.20776 0.95745 0.87784 0.93061 1.22208 0.99244 0.94376 1.01168 1.21135 0.98764 0.95285 0.95188 1.22040 0.98641 0.93675 1.02537 1.21870 0.98851 0.98342 0.82628 1.48084 1.54003 1.14685 1.16825 1.19999 0.79870 0.82045 0.86016 1.90676 1.53106 1.78680 1.19261 1.21542 0.98189 0.94627 0.94573 0.86077 1.21829 0.99730 0.89725 0.98150 1.22217 0.98082 0.93909 0.97532 1.20308 0.97811 0.96827 0.96619 1.21041 0.98549 0.98455 0.94954 1.21009 1.00263 0.92302 1.00251 1.20361 0.96530 0.98443 0.94984 1.21687 0.99270 0.95979 0.95529 1.21673 0.93790 0.87368 0.98252 1.21980 1.00616 0.96168 0.97808 0.97380 0.96900 0.93212 0.92019 0.94999 0.93734 0.92027 0.93011 0.91230 0.91544 0.89959 0.91130 0.89925 0.87289 0.88423 0.86246 0.85529 0.85430 0.86226 0.91496 0.89176 0.90567 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.26 8.99 59.85 0.54 3.80 16 2 N -0.61 -15.17 2.80 -181.12 -0.51 -15.67 16 3 C -0.36 -9.96 9.46 -15.06 -0.14 -10.10 16 4 H 0.06 1.57 7.98 -52.49 -0.42 1.15 16 5 C -0.02 -0.66 4.60 -17.43 -0.08 -0.74 16 6 N -0.91 -27.50 12.75 55.49 0.71 -26.80 16 7 Si 1.06 25.39 30.01 -169.99 -5.10 20.29 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 C 0.15 3.04 5.44 -4.04 -0.02 3.01 16 12 C -0.13 -2.15 5.01 -26.73 -0.13 -2.29 16 13 C -0.08 -1.06 2.15 -90.58 -0.19 -1.25 16 14 C -0.13 -1.42 5.14 -26.61 -0.14 -1.55 16 15 C 0.11 0.97 6.33 -3.71 -0.02 0.95 16 16 N -0.60 -6.60 2.97 -172.76 -0.51 -7.11 16 17 C 0.53 6.41 7.23 -10.99 -0.08 6.33 16 18 O -0.54 -8.21 15.12 5.55 0.08 -8.13 16 19 C -0.07 -0.64 2.94 -92.23 -0.27 -0.91 16 20 H 0.12 0.90 7.21 -51.92 -0.37 0.53 16 21 C -0.06 -0.50 7.77 -27.19 -0.21 -0.71 16 22 C -0.12 -1.12 7.49 -103.88 -0.78 -1.90 16 23 C -0.10 -0.82 10.03 -39.58 -0.40 -1.22 16 24 C -0.11 -0.84 10.04 -39.63 -0.40 -1.24 16 25 C -0.12 -0.94 10.04 -39.63 -0.40 -1.33 16 26 C -0.09 -0.75 10.03 -39.58 -0.40 -1.15 16 27 C -0.12 -1.20 6.79 -103.88 -0.71 -1.90 16 28 C 0.11 1.24 6.43 -3.71 -0.02 1.21 16 29 C -0.13 -1.48 5.36 -26.61 -0.14 -1.62 16 30 H 0.01 0.20 6.87 -51.93 -0.36 -0.16 16 31 H 0.01 0.26 8.09 -51.93 -0.42 -0.16 16 32 H 0.05 1.29 7.28 -51.93 -0.38 0.91 16 33 H 0.27 8.16 6.38 -40.82 -0.26 7.90 16 34 H 0.03 0.58 6.47 -51.93 -0.34 0.24 16 35 H 0.04 0.91 8.04 -51.93 -0.42 0.50 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.90 6.50 -51.93 -0.34 0.57 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.63 5.67 -51.93 -0.29 0.34 16 43 H 0.11 1.09 7.04 -51.93 -0.37 0.72 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 47 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 48 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 49 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 50 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 51 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 406.30 15.07 6.12 6.12 Total: -1.00 -33.37 406.30 -11.82 -45.19 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.62 Total: -1.28 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -4.00 Total: -12.61 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.31 Total: -49.58 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.08 Total: -8.13 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.37 -11.82 -45.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698955366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.101 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds