Wall clock time and date at job start Sat Apr 11 2020 06:48:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.36932 * 119.99881 * 2 1
4 4 H 1.08000 * 120.00295 * 156.27351 * 3 2 1
5 5 C 1.38818 * 120.00179 * 336.27304 * 3 2 1
6 6 N 1.31621 * 119.99872 * 330.11135 * 5 3 2
7 7 Si 1.86788 * 120.00162 * 150.38481 * 5 3 2
8 8 H 1.48501 * 109.47299 * 179.72497 * 7 5 3
9 9 H 1.48507 * 109.47177 * 299.72683 * 7 5 3
10 10 H 1.48498 * 109.47236 * 59.72476 * 7 5 3
11 11 C 1.46499 * 120.00081 * 180.02562 * 2 1 3
12 12 C 1.53002 * 109.46867 * 270.00066 * 11 2 1
13 13 C 1.53003 * 109.46897 * 180.02562 * 12 11 2
14 14 C 1.53041 * 109.45842 * 295.02383 * 13 12 11
15 15 C 1.53192 * 109.31206 * 178.60137 * 14 13 12
16 16 N 1.46926 * 108.76331 * 54.66067 * 15 14 13
17 17 C 1.34775 * 120.63426 * 126.36594 * 16 15 14
18 18 O 1.21285 * 120.00019 * 180.02562 * 17 16 15
19 19 C 1.50696 * 119.99910 * 0.02562 * 17 16 15
20 20 H 1.09009 * 112.83000 * 311.11553 * 19 17 16
21 21 C 1.53520 * 113.58839 * 180.02562 * 19 17 16
22 22 C 1.51605 * 87.24628 * 245.40687 * 21 19 17
23 23 C 1.38377 * 147.52954 * 179.97438 * 22 21 19
24 24 C 1.38090 * 120.32833 * 179.97438 * 23 22 21
25 25 C 1.38243 * 119.95706 * 0.03996 * 24 23 22
26 26 C 1.38099 * 119.95382 * 359.97438 * 25 24 23
27 27 C 1.38370 * 120.32596 * 0.02562 * 26 25 24
28 28 C 1.46931 * 118.73747 * 306.38167 * 16 15 14
29 29 C 1.53039 * 109.45846 * 174.97327 * 13 12 11
30 30 H 1.08997 * 109.47043 * 92.93685 * 1 2 3
31 31 H 1.09005 * 109.46902 * 212.93297 * 1 2 3
32 32 H 1.08996 * 109.47280 * 332.93522 * 1 2 3
33 33 H 0.97005 * 119.99733 * 354.89598 * 6 5 3
34 34 H 1.09002 * 109.47193 * 29.99696 * 11 2 1
35 35 H 1.08994 * 109.47415 * 149.99794 * 11 2 1
36 36 H 1.09002 * 109.46912 * 299.99802 * 12 11 2
37 37 H 1.09000 * 109.47413 * 60.00093 * 12 11 2
38 38 H 1.08992 * 109.46051 * 54.99679 * 13 12 11
39 39 H 1.08998 * 109.49865 * 298.56676 * 14 13 12
40 40 H 1.08996 * 109.50094 * 58.66337 * 14 13 12
41 41 H 1.08998 * 109.59952 * 294.87007 * 15 14 13
42 42 H 1.09002 * 109.70381 * 174.50369 * 15 14 13
43 43 H 1.09003 * 113.58946 * 0.02562 * 21 19 17
44 44 H 1.08998 * 113.58999 * 130.73495 * 21 19 17
45 45 H 1.07997 * 119.83584 * 0.03453 * 23 22 21
46 46 H 1.08006 * 120.02569 * 179.97438 * 24 23 22
47 47 H 1.08005 * 120.02743 * 180.02562 * 25 24 23
48 48 H 1.08003 * 119.83672 * 179.97438 * 26 25 24
49 49 H 1.09009 * 109.58289 * 293.82401 * 28 16 15
50 50 H 1.08998 * 109.58656 * 173.40178 * 28 16 15
51 51 H 1.08999 * 109.49895 * 301.33336 * 29 13 12
52 52 H 1.09006 * 109.50095 * 61.43167 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1612 1.2255 0.3763
5 6 1.5436 2.3373 -0.4837
6 7 0.6345 2.2538 -1.4319
7 14 2.0237 4.0056 0.2056
8 1 1.2421 5.0672 -0.4781
9 1 1.7373 4.0404 1.6623
10 1 3.4734 4.2356 -0.0194
11 6 2.1976 -1.2687 -0.0006
12 6 2.4525 -1.7110 1.4418
13 6 3.2181 -3.0357 1.4412
14 6 2.3412 -4.1310 0.8301
15 6 3.1235 -5.4478 0.7992
16 7 3.6020 -5.7453 2.1561
17 6 3.3334 -6.9328 2.7341
18 8 3.7337 -7.1660 3.8550
19 6 2.5358 -7.9709 1.9876
20 1 1.6224 -7.5681 1.5497
21 6 2.3163 -9.2657 2.7826
22 6 3.1657 -9.9641 1.7390
23 6 3.7338 -11.1456 1.2960
24 6 4.4946 -11.1645 0.1438
25 6 4.6920 -9.9986 -0.5723
26 6 4.1276 -8.8166 -0.1346
27 6 3.3644 -8.7921 1.0193
28 6 4.3786 -4.7233 2.8711
29 6 3.5825 -3.4146 2.8785
30 1 -0.3633 -0.0527 -1.0263
31 1 -0.3633 -0.8626 0.5587
32 1 -0.3633 0.9151 0.4676
33 1 0.4412 1.3974 -1.8444
34 1 1.6085 -2.0282 -0.5147
35 1 3.1499 -1.1382 -0.5143
36 1 3.0416 -0.9515 1.9559
37 1 1.5001 -1.8416 1.9556
38 1 4.1287 -2.9286 0.8519
39 1 1.4420 -4.2559 1.4333
40 1 2.0625 -3.8498 -0.1854
41 1 3.9741 -5.3520 0.1245
42 1 2.4739 -6.2532 0.4561
43 1 2.7682 -9.2505 3.7745
44 1 1.2785 -9.5986 2.7962
45 1 3.5806 -12.0576 1.8538
46 1 4.9360 -12.0893 -0.1973
47 1 5.2865 -10.0121 -1.4739
48 1 4.2834 -7.9068 -0.6953
49 1 5.3317 -4.5684 2.3653
50 1 4.5553 -5.0494 3.8961
51 1 4.1875 -2.6233 3.3211
52 1 2.6714 -3.5463 3.4622
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001698955366.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:10
Heat of formation + Delta-G solvation = 21.832643 kcal
Electronic energy + Delta-G solvation = -29645.767701 eV
Core-core repulsion = 25803.749618 eV
Total energy + Delta-G solvation = -3842.018083 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.205 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-42.14998 -40.51980 -39.04112 -37.73598 -36.18366 -35.33276 -33.18800 -32.28552
-31.66594 -30.27799 -28.68112 -27.98117 -26.96337 -25.78114 -24.32036 -23.95138
-23.00978 -22.14738 -21.54513 -20.97923 -19.82262 -19.32022 -18.54889 -17.72574
-17.14702 -16.48301 -16.34593 -16.22009 -15.94941 -15.50099 -15.42098 -15.40499
-15.26942 -15.20220 -14.61557 -14.35797 -14.20259 -13.94547 -13.90497 -13.72241
-13.50211 -13.21765 -13.03578 -12.89935 -12.85002 -12.77235 -12.69042 -12.45985
-12.22880 -12.04955 -11.95604 -11.89653 -11.71327 -11.55562 -11.47733 -11.40195
-11.14480 -10.97940 -10.40110 -9.80021 -9.73626 -9.53886 -8.94256 -8.25330
-5.34982 0.29153 0.42953 1.43311 1.57644 1.64729 1.83803 1.91210
2.66369 2.78721 3.10162 3.18679 3.33984 3.39842 3.51380 3.54908
3.75141 3.87134 3.93561 4.09283 4.12932 4.19177 4.22708 4.30023
4.33486 4.44727 4.53472 4.61207 4.62741 4.64116 4.68649 4.73479
4.77502 4.79724 4.82094 4.88690 4.92423 4.97112 4.98409 5.00693
5.05633 5.12341 5.13083 5.17798 5.25923 5.44149 5.45090 5.53991
5.55974 5.56129 5.71709 5.84547 6.03420 6.30715 6.39982 7.02634
7.08310 7.81495 8.20952 8.99573
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.022490 B = 0.001994 C = 0.001928
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1244.683196 B =14037.977297 C =14520.910030
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.147 3.853
2 N -0.627 5.627
3 C -0.359 4.359
4 H 0.050 0.950
5 C -0.076 4.076
6 N -0.939 5.939
7 Si 1.108 2.892
8 H -0.292 1.292
9 H -0.283 1.283
10 H -0.275 1.275
11 C 0.151 3.849
12 C -0.113 4.113
13 C -0.076 4.076
14 C -0.127 4.127
15 C 0.109 3.891
16 N -0.603 5.603
17 C 0.529 3.471
18 O -0.580 6.580
19 C -0.064 4.064
20 H 0.142 0.858
21 C -0.056 4.056
22 C -0.138 4.138
23 C -0.110 4.110
24 C -0.115 4.115
25 C -0.126 4.126
26 C -0.097 4.097
27 C -0.139 4.139
28 C 0.114 3.886
29 C -0.119 4.119
30 H -0.004 1.004
31 H 0.047 0.953
32 H 0.021 0.979
33 H 0.255 0.745
34 H 0.053 0.947
35 H 0.035 0.965
36 H 0.039 0.961
37 H 0.046 0.954
38 H 0.074 0.926
39 H 0.063 0.937
40 H 0.085 0.915
41 H 0.084 0.916
42 H 0.103 0.897
43 H 0.091 0.909
44 H 0.119 0.881
45 H 0.134 0.866
46 H 0.151 0.849
47 H 0.149 0.851
48 H 0.132 0.868
49 H 0.079 0.921
50 H 0.077 0.923
51 H 0.077 0.923
52 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.171 -28.272 3.966 29.208
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.001 3.999
2 N -0.351 5.351
3 C -0.488 4.488
4 H 0.068 0.932
5 C -0.273 4.273
6 N -0.581 5.581
7 Si 0.933 3.067
8 H -0.218 1.218
9 H -0.209 1.209
10 H -0.201 1.201
11 C 0.026 3.974
12 C -0.153 4.153
13 C -0.095 4.095
14 C -0.165 4.165
15 C -0.013 4.013
16 N -0.334 5.334
17 C 0.318 3.682
18 O -0.460 6.460
19 C -0.085 4.085
20 H 0.160 0.840
21 C -0.093 4.093
22 C -0.138 4.138
23 C -0.128 4.128
24 C -0.133 4.133
25 C -0.144 4.144
26 C -0.115 4.115
27 C -0.140 4.140
28 C -0.008 4.008
29 C -0.158 4.158
30 H 0.014 0.986
31 H 0.065 0.935
32 H 0.040 0.960
33 H 0.065 0.935
34 H 0.071 0.929
35 H 0.053 0.947
36 H 0.058 0.942
37 H 0.065 0.935
38 H 0.093 0.907
39 H 0.082 0.918
40 H 0.103 0.897
41 H 0.102 0.898
42 H 0.121 0.879
43 H 0.109 0.891
44 H 0.137 0.863
45 H 0.152 0.848
46 H 0.168 0.832
47 H 0.167 0.833
48 H 0.150 0.850
49 H 0.097 0.903
50 H 0.096 0.904
51 H 0.096 0.904
52 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 6.069 -26.763 4.467 27.803
hybrid contribution 0.252 -1.130 -0.028 1.158
sum 6.321 -27.892 4.439 28.942
Atomic orbital electron populations
1.20774 0.83884 0.98408 0.96822 1.44237 1.01488 1.02581 1.86831
1.20091 1.00679 0.88595 1.39467 0.93233 1.27055 0.99130 1.05444
0.95717 1.70918 1.38192 1.27359 1.21621 0.82952 0.75977 0.72229
0.75568 1.21840 1.20930 1.20095 1.20966 0.95049 0.86278 0.95122
1.21951 0.99169 0.95897 0.98291 1.21034 0.98696 0.93685 0.96088
1.21986 0.98340 0.93796 1.02333 1.21963 0.99509 0.97980 0.81809
1.48185 1.53513 1.14338 1.17374 1.20495 0.79532 0.82572 0.85646
1.90656 1.54761 1.79491 1.21077 1.21550 0.98485 0.93974 0.94483
0.84004 1.21826 1.00828 0.89607 0.97035 1.22437 0.98827 0.94575
0.97951 1.20615 0.97806 0.97165 0.97194 1.21400 0.97911 0.99504
0.94436 1.21359 1.00055 0.92047 1.00942 1.20625 0.96466 0.99446
0.94938 1.21779 1.00099 0.95977 0.96140 1.21605 0.94269 0.87001
0.97974 1.21875 1.00355 0.96543 0.96984 0.98615 0.93466 0.96013
0.93474 0.92858 0.94662 0.94237 0.93537 0.90732 0.91805 0.89661
0.89824 0.87934 0.89113 0.86259 0.84846 0.83155 0.83300 0.85045
0.90324 0.90419 0.90444 0.92485
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.15 7.00 8.99 127.77 1.15 8.14 16
2 N -0.63 -31.21 2.80 -726.93 -2.03 -33.24 16
3 C -0.36 -20.09 9.46 84.04 0.80 -19.30 16
4 H 0.05 2.79 7.98 -2.91 -0.02 2.77 16
5 C -0.08 -4.39 4.60 84.86 0.39 -4.00 16
6 N -0.94 -57.51 12.75 21.65 0.28 -57.23 16
7 Si 1.11 51.31 30.01 68.60 2.06 53.37 16
8 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16
9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16
11 C 0.15 5.82 5.44 86.38 0.47 6.29 16
12 C -0.11 -3.63 5.01 30.60 0.15 -3.48 16
13 C -0.08 -1.76 2.15 -10.77 -0.02 -1.79 16
14 C -0.13 -2.42 5.14 30.67 0.16 -2.26 16
15 C 0.11 1.70 6.33 86.36 0.55 2.25 16
16 N -0.60 -12.20 2.97 -818.89 -2.43 -14.63 16
17 C 0.53 12.24 7.23 87.66 0.63 12.87 16
18 O -0.58 -17.77 15.12 -3.05 -0.05 -17.82 16
19 C -0.06 -1.10 2.94 -11.83 -0.03 -1.14 16
20 H 0.14 1.76 7.21 -2.38 -0.02 1.74 16
21 C -0.06 -0.93 7.77 30.30 0.24 -0.70 16
22 C -0.14 -2.47 7.49 -19.38 -0.15 -2.62 16
23 C -0.11 -1.68 10.03 22.27 0.22 -1.46 16
24 C -0.11 -1.47 10.04 22.24 0.22 -1.25 16
25 C -0.13 -1.66 10.04 22.24 0.22 -1.44 16
26 C -0.10 -1.50 10.03 22.27 0.22 -1.27 16
27 C -0.14 -2.47 6.79 -19.38 -0.13 -2.60 16
28 C 0.11 2.40 6.43 86.36 0.56 2.96 16
29 C -0.12 -2.63 5.36 30.67 0.16 -2.46 16
30 H 0.00 -0.21 6.87 -2.39 -0.02 -0.23 16
31 H 0.05 1.88 8.09 -2.38 -0.02 1.86 16
32 H 0.02 1.12 7.28 -2.39 -0.02 1.10 16
33 H 0.26 15.85 6.38 -92.70 -0.59 15.26 16
34 H 0.05 1.83 6.47 -2.39 -0.02 1.81 16
35 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16
36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16
38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
40 H 0.08 1.62 6.50 -2.39 -0.02 1.60 16
41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
42 H 0.10 1.24 5.67 -2.39 -0.01 1.23 16
43 H 0.09 1.85 7.04 -2.39 -0.02 1.83 16
44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16
45 H 0.13 1.53 8.06 -2.91 -0.02 1.50 16
46 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16
47 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16
48 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16
49 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16
50 H 0.08 1.87 7.00 -2.39 -0.02 1.86 16
51 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
52 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16
Total: -1.00 -72.99 406.30 4.70 -68.28
By element:
Atomic # 1 Polarization: 13.44 SS G_CDS: 1.07 Total: 14.51 kcal
Atomic # 6 Polarization: -19.05 SS G_CDS: 5.81 Total: -13.24 kcal
Atomic # 7 Polarization: -100.91 SS G_CDS: -4.19 Total: -105.10 kcal
Atomic # 8 Polarization: -17.77 SS G_CDS: -0.05 Total: -17.82 kcal
Atomic # 14 Polarization: 51.31 SS G_CDS: 2.06 Total: 53.37 kcal
Total: -72.99 4.70 -68.28 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698955366.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.116 kcal
(2) G-P(sol) polarization free energy of solvation -72.986 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.131 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds