Wall clock time and date at job start Sat Apr 11 2020 06:47:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42904 * 113.99846 * 2 1
4 4 C 1.53006 * 109.46798 * 180.02562 * 3 2 1
5 5 C 1.50695 * 109.54199 * 294.57211 * 4 3 2
6 6 O 1.21287 * 119.99954 * 113.47022 * 5 4 3
7 7 N 1.34774 * 120.00423 * 293.46880 * 5 4 3
8 8 C 1.46504 * 119.99838 * 354.06016 * 7 5 4
9 9 C 1.46504 * 120.00444 * 174.05980 * 7 5 4
10 10 C 1.52996 * 109.46638 * 89.83556 * 9 7 5
11 11 C 1.52999 * 109.47396 * 294.01821 * 10 9 7
12 12 C 1.52997 * 109.47602 * 54.02235 * 10 9 7
13 13 C 1.53005 * 109.46972 * 174.02308 * 10 9 7
14 14 N 1.46493 * 109.47276 * 180.02562 * 13 10 9
15 15 C 1.36943 * 119.99799 * 180.02562 * 14 13 10
16 16 H 1.07995 * 119.99986 * 359.97438 * 15 14 13
17 17 C 1.38817 * 119.99667 * 179.97438 * 15 14 13
18 18 N 1.31621 * 119.99527 * 179.97438 * 17 15 14
19 19 Si 1.86795 * 120.00097 * 359.97438 * 17 15 14
20 20 H 1.48508 * 109.46756 * 90.00239 * 19 17 15
21 21 H 1.48501 * 109.47124 * 209.99711 * 19 17 15
22 22 H 1.48496 * 109.47396 * 330.00144 * 19 17 15
23 23 C 1.53178 * 109.54381 * 54.75109 * 4 3 2
24 24 C 1.53282 * 109.06273 * 176.84925 * 23 4 3
25 25 O 1.42901 * 109.46080 * 302.44917 * 24 23 4
26 26 C 1.42895 * 114.10181 * 61.15298 * 25 24 23
27 27 C 1.53092 * 109.41809 * 298.84604 * 26 25 24
28 28 H 1.09003 * 109.46786 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.46718 * 299.99327 * 1 2 3
30 30 H 1.08995 * 109.47118 * 59.99393 * 1 2 3
31 31 H 1.08999 * 109.46967 * 60.00715 * 3 2 1
32 32 H 1.09001 * 109.47376 * 300.00596 * 3 2 1
33 33 H 1.09002 * 109.47309 * 270.38788 * 8 7 5
34 34 H 1.09003 * 109.46751 * 30.38911 * 8 7 5
35 35 H 1.08994 * 109.47227 * 150.38567 * 8 7 5
36 36 H 1.08993 * 109.46761 * 329.83991 * 9 7 5
37 37 H 1.08996 * 109.47095 * 209.83317 * 9 7 5
38 38 H 1.08999 * 109.46886 * 65.57527 * 11 10 9
39 39 H 1.09000 * 109.47380 * 185.57511 * 11 10 9
40 40 H 1.09000 * 109.47448 * 305.57638 * 11 10 9
41 41 H 1.09006 * 109.46978 * 59.99593 * 12 10 9
42 42 H 1.08993 * 109.47306 * 179.97438 * 12 10 9
43 43 H 1.08998 * 109.46962 * 300.00216 * 12 10 9
44 44 H 1.09006 * 109.46877 * 299.99959 * 13 10 9
45 45 H 1.08998 * 109.47025 * 59.99752 * 13 10 9
46 46 H 0.96995 * 120.00157 * 359.97438 * 14 13 10
47 47 H 0.97001 * 119.99658 * 180.02562 * 18 17 15
48 48 H 1.08997 * 109.52281 * 296.84501 * 23 4 3
49 49 H 1.09008 * 109.52051 * 57.02766 * 23 4 3
50 50 H 1.08995 * 109.45688 * 182.44666 * 24 23 4
51 51 H 1.09001 * 109.46529 * 62.44842 * 24 23 4
52 52 H 1.09000 * 109.48435 * 178.85629 * 26 25 24
53 53 H 1.09007 * 109.49113 * 58.83497 * 26 25 24
54 54 H 1.08994 * 109.51925 * 297.69892 * 27 26 25
55 55 H 1.09000 * 109.57300 * 177.54184 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5355 1.1846 -0.0006
5 6 3.9919 0.5559 1.2906
6 8 4.5038 -0.5437 1.2820
7 7 3.8314 1.2153 2.4550
8 6 3.3343 2.5934 2.4538
9 6 4.1540 0.5541 3.7219
10 6 5.6217 0.8091 4.0708
11 6 6.5181 0.1206 3.0397
12 6 5.8946 2.3144 4.0597
13 6 5.9202 0.2469 5.4622
14 7 7.3253 0.4915 5.7966
15 6 7.8253 0.0732 7.0009
16 1 7.1837 -0.4366 7.7042
17 6 9.1570 0.3045 7.3175
18 7 9.6374 -0.0971 8.4752
19 14 10.2669 1.1858 6.1007
20 1 10.2115 2.6487 6.3498
21 1 11.6628 0.7077 6.2679
22 1 9.8087 0.9016 4.7170
23 6 3.9801 0.3139 -1.1798
24 6 5.5117 0.2648 -1.2165
25 8 6.0283 1.5933 -1.3172
26 6 5.6825 2.4388 -0.2183
27 6 4.1597 2.5764 -0.1416
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3632 0.5137 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 1.6887 1.8463 0.8900
32 1 1.6886 1.8465 -0.8899
33 1 4.1754 3.2831 2.3825
34 1 2.6711 2.7397 1.6011
35 1 2.7864 2.7828 3.3768
36 1 3.9845 -0.5182 3.6255
37 1 3.5181 0.9530 4.5121
38 1 6.3771 0.5887 2.0655
39 1 7.5608 0.2180 3.3420
40 1 6.2552 -0.9354 2.9769
41 1 5.2559 2.8049 4.7943
42 1 6.9401 2.4960 4.3087
43 1 5.6819 2.7149 3.0685
44 1 5.2815 0.7374 6.1969
45 1 5.7258 -0.8256 5.4701
46 1 7.9017 0.9491 5.1648
47 1 10.5678 0.0649 8.6967
48 1 3.5839 -0.6942 -1.0579
49 1 3.6073 0.7427 -2.1101
50 1 5.8357 -0.3176 -2.0789
51 1 5.8821 -0.2010 -0.3034
52 1 6.1296 3.4224 -0.3616
53 1 6.0550 2.0017 0.7082
54 1 3.7906 3.0507 -1.0509
55 1 3.8910 3.1852 0.7217
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725141904.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:33
Heat of formation + Delta-G solvation = -113.243421 kcal
Electronic energy + Delta-G solvation = -33921.734497 eV
Core-core repulsion = 29766.550157 eV
Total energy + Delta-G solvation = -4155.184340 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 342.235 amu
Computer time = 3.92 seconds
Orbital eigenvalues (eV)
-42.41720 -39.86848 -38.76141 -38.43559 -36.72544 -35.60240 -34.51758 -32.72751
-32.02522 -29.25170 -28.99915 -28.19464 -27.62468 -27.26008 -26.73473 -24.58099
-24.39358 -23.69626 -22.35648 -20.45359 -19.87367 -19.28893 -17.85505 -17.69205
-17.35570 -17.11517 -16.92954 -16.72768 -16.59160 -16.44494 -15.82022 -15.70778
-15.59782 -15.22858 -14.97994 -14.82410 -14.53926 -14.37569 -14.20394 -14.03625
-13.86138 -13.66842 -13.37844 -13.18384 -13.05779 -12.95542 -12.86259 -12.80376
-12.56587 -12.51086 -12.32040 -12.20630 -12.13354 -12.04405 -11.75859 -11.70360
-11.64164 -11.44460 -11.26657 -11.00487 -10.77450 -10.42569 -10.29910 -9.54810
-9.29750 -8.05318 -5.37090 1.32295 1.35659 1.42575 1.68626 2.02118
2.44490 2.69758 2.93291 3.25890 3.30657 3.61817 3.69155 3.71630
3.83382 3.88779 3.93935 4.02340 4.03356 4.07766 4.26844 4.37144
4.42177 4.42926 4.49594 4.51663 4.55929 4.57675 4.58909 4.62700
4.68782 4.73959 4.74886 4.80220 4.83383 4.87599 4.87905 4.90460
4.96187 5.06798 5.09580 5.12332 5.12657 5.14656 5.22605 5.39790
5.48325 5.59380 5.73791 6.19535 6.19853 6.21123 6.46791 7.05826
7.26590 7.83096 8.02103 9.16671
Molecular weight = 342.24amu
Principal moments of inertia in cm(-1)
A = 0.016490 B = 0.003280 C = 0.003007
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1697.568558 B = 8535.336231 C = 9308.367802
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.414 6.414
3 C 0.067 3.933
4 C -0.074 4.074
5 C 0.523 3.477
6 O -0.563 6.563
7 N -0.605 5.605
8 C 0.044 3.956
9 C 0.138 3.862
10 C -0.079 4.079
11 C -0.113 4.113
12 C -0.132 4.132
13 C 0.167 3.833
14 N -0.753 5.753
15 C -0.231 4.231
16 H 0.058 0.942
17 C -0.062 4.062
18 N -0.983 5.983
19 Si 0.949 3.051
20 H -0.270 1.270
21 H -0.294 1.294
22 H -0.262 1.262
23 C -0.115 4.115
24 C 0.051 3.949
25 O -0.397 6.397
26 C 0.049 3.951
27 C -0.164 4.164
28 H 0.085 0.915
29 H 0.051 0.949
30 H 0.058 0.942
31 H 0.080 0.920
32 H 0.086 0.914
33 H 0.077 0.923
34 H 0.102 0.898
35 H 0.093 0.907
36 H 0.060 0.940
37 H 0.104 0.896
38 H 0.052 0.948
39 H 0.026 0.974
40 H 0.037 0.963
41 H 0.071 0.929
42 H 0.032 0.968
43 H 0.076 0.924
44 H 0.036 0.964
45 H 0.011 0.989
46 H 0.365 0.635
47 H 0.258 0.742
48 H 0.068 0.932
49 H 0.091 0.909
50 H 0.098 0.902
51 H 0.041 0.959
52 H 0.118 0.882
53 H 0.030 0.970
54 H 0.107 0.893
55 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.728 11.657 -24.080 35.104
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.333 6.333
3 C -0.009 4.009
4 C -0.077 4.077
5 C 0.311 3.689
6 O -0.441 6.441
7 N -0.337 5.337
8 C -0.097 4.097
9 C 0.014 3.986
10 C -0.081 4.081
11 C -0.171 4.171
12 C -0.189 4.189
13 C 0.040 3.960
14 N -0.399 5.399
15 C -0.362 4.362
16 H 0.076 0.924
17 C -0.254 4.254
18 N -0.634 5.634
19 Si 0.776 3.224
20 H -0.196 1.196
21 H -0.221 1.221
22 H -0.187 1.187
23 C -0.153 4.153
24 C -0.026 4.026
25 O -0.316 6.316
26 C -0.027 4.027
27 C -0.200 4.200
28 H 0.103 0.897
29 H 0.069 0.931
30 H 0.077 0.923
31 H 0.098 0.902
32 H 0.104 0.896
33 H 0.095 0.905
34 H 0.120 0.880
35 H 0.112 0.888
36 H 0.079 0.921
37 H 0.122 0.878
38 H 0.071 0.929
39 H 0.046 0.954
40 H 0.056 0.944
41 H 0.090 0.910
42 H 0.052 0.948
43 H 0.094 0.906
44 H 0.054 0.946
45 H 0.029 0.971
46 H 0.199 0.801
47 H 0.067 0.933
48 H 0.087 0.913
49 H 0.109 0.891
50 H 0.116 0.884
51 H 0.059 0.941
52 H 0.136 0.864
53 H 0.049 0.951
54 H 0.125 0.875
55 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -22.283 10.883 -24.032 34.532
hybrid contribution 1.047 -0.289 0.286 1.124
sum -21.235 10.594 -23.746 33.571
Atomic orbital electron populations
1.22886 0.79338 1.03444 1.01158 1.87947 1.21455 1.28305 1.95627
1.22846 0.89615 0.85364 1.03122 1.20923 0.96352 0.97882 0.92557
1.20736 0.77420 0.85134 0.85580 1.90684 1.44033 1.22513 1.86906
1.47738 1.65256 1.15537 1.05192 1.22858 1.00572 0.80804 1.05451
1.21343 0.93619 0.98009 0.85611 1.21071 0.96222 0.97003 0.93777
1.21675 0.97873 0.99718 0.97808 1.21893 1.01132 0.93414 1.02474
1.20718 0.84534 0.96793 0.93965 1.42739 1.08534 1.71059 1.17559
1.19070 0.94332 1.29366 0.93413 0.92436 1.25435 0.98443 1.02721
0.98759 1.69875 1.15078 1.54272 1.24214 0.85505 0.78220 0.79101
0.79554 1.19610 1.22112 1.18745 1.21856 0.95675 1.00615 0.97175
1.22766 0.93834 0.83768 1.02228 1.87881 1.75671 1.22838 1.45183
1.22783 0.95257 0.95661 0.88995 1.22916 0.95513 0.94173 1.07437
0.89680 0.93056 0.92327 0.90244 0.89635 0.90461 0.87980 0.88848
0.92150 0.87831 0.92905 0.95444 0.94355 0.90994 0.94842 0.90570
0.94556 0.97079 0.80059 0.93313 0.91292 0.89058 0.88404 0.94051
0.86436 0.95129 0.87455 0.85582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 11.01 113.37 1.25 1.54 16
2 O -0.41 -7.36 9.65 -148.98 -1.44 -8.79 16
3 C 0.07 0.79 4.53 71.98 0.33 1.12 16
4 C -0.07 -1.22 0.34 -52.81 -0.02 -1.23 16
5 C 0.52 12.24 3.69 87.66 0.32 12.56 16
6 O -0.56 -18.52 11.37 -3.05 -0.03 -18.56 16
7 N -0.61 -11.58 2.36 -846.76 -2.00 -13.58 16
8 C 0.04 0.41 7.34 127.77 0.94 1.35 16
9 C 0.14 3.35 4.63 86.38 0.40 3.75 16
10 C -0.08 -2.41 0.61 -52.18 -0.03 -2.44 16
11 C -0.11 -4.02 6.93 71.98 0.50 -3.52 16
12 C -0.13 -3.41 7.46 71.98 0.54 -2.87 16
13 C 0.17 6.55 5.15 86.38 0.44 7.00 16
14 N -0.75 -36.63 4.76 -343.45 -1.63 -38.27 16
15 C -0.23 -13.64 10.47 84.03 0.88 -12.76 16
16 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16
17 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16
18 N -0.98 -64.63 13.97 21.65 0.30 -64.33 16
19 Si 0.95 47.31 27.73 68.60 1.90 49.21 16
20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16
21 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16
22 H -0.26 -12.27 6.52 99.48 0.65 -11.63 16
23 C -0.12 -2.29 4.31 30.75 0.13 -2.16 16
24 C 0.05 1.20 6.56 72.08 0.47 1.68 16
25 O -0.40 -9.24 10.77 -148.98 -1.60 -10.85 16
26 C 0.05 0.88 6.62 72.01 0.48 1.35 16
27 C -0.16 -1.83 4.49 30.68 0.14 -1.70 16
28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16
30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16
31 H 0.08 0.64 5.39 -2.39 -0.01 0.63 16
32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16
33 H 0.08 0.61 5.33 -2.39 -0.01 0.59 16
34 H 0.10 0.51 3.18 -2.39 -0.01 0.50 16
35 H 0.09 0.60 7.89 -2.39 -0.02 0.59 16
36 H 0.06 1.78 7.52 -2.39 -0.02 1.76 16
37 H 0.10 1.98 7.89 -2.39 -0.02 1.96 16
38 H 0.05 1.75 4.85 -2.39 -0.01 1.74 16
39 H 0.03 1.07 6.72 -2.39 -0.02 1.06 16
40 H 0.04 1.49 7.67 -2.39 -0.02 1.47 16
41 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16
42 H 0.03 1.04 6.86 -2.39 -0.02 1.02 16
43 H 0.08 1.53 5.38 -2.39 -0.01 1.52 16
44 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16
45 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16
46 H 0.36 17.27 3.21 -92.71 -0.30 16.97 16
47 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16
48 H 0.07 1.68 7.47 -2.39 -0.02 1.66 16
49 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16
50 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16
51 H 0.04 1.25 6.06 -2.39 -0.01 1.24 16
52 H 0.12 1.56 8.14 -2.39 -0.02 1.55 16
53 H 0.03 0.69 5.82 -2.38 -0.01 0.68 16
54 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16
55 H 0.13 0.79 3.53 -2.39 -0.01 0.78 16
Total: -1.00 -81.25 391.67 3.27 -77.98
By element:
Atomic # 1 Polarization: 26.28 SS G_CDS: 0.54 Total: 26.82 kcal
Atomic # 6 Polarization: -6.88 SS G_CDS: 7.23 Total: 0.36 kcal
Atomic # 7 Polarization: -112.84 SS G_CDS: -3.33 Total: -116.17 kcal
Atomic # 8 Polarization: -35.13 SS G_CDS: -3.08 Total: -38.20 kcal
Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.21 kcal
Total: -81.25 3.27 -77.98 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725141904.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.261 kcal
(2) G-P(sol) polarization free energy of solvation -81.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.511 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.982 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.243 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.93 seconds