Wall clock time and date at job start Sat Apr 11 2020 06:48:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46503 * 109.47052 * 2 1
4 4 C 1.46505 * 119.99935 * 269.99749 * 3 2 1
5 5 C 1.52994 * 109.47508 * 270.00209 * 4 3 2
6 6 C 1.34780 * 120.00079 * 90.00326 * 3 2 1
7 7 O 1.21511 * 119.99881 * 180.02562 * 6 3 2
8 8 O 1.34638 * 119.99671 * 0.02562 * 6 3 2
9 9 C 1.45202 * 116.99652 * 180.02562 * 8 6 3
10 10 C 1.53000 * 109.46862 * 179.97438 * 9 8 6
11 11 H 1.09004 * 109.45952 * 184.97776 * 10 9 8
12 12 C 1.53031 * 109.45602 * 304.94954 * 10 9 8
13 13 C 1.53117 * 109.28042 * 179.19140 * 12 10 9
14 14 C 1.53125 * 109.15978 * 302.34650 * 13 12 10
15 15 C 1.53037 * 109.27608 * 57.65388 * 14 13 12
16 16 N 1.46850 * 109.52462 * 300.81733 * 15 14 13
17 17 C 1.46902 * 110.99822 * 185.83934 * 16 15 14
18 18 C 1.53000 * 109.47042 * 51.71783 * 17 16 15
19 19 O 1.42898 * 109.47048 * 62.35901 * 18 17 16
20 20 C 1.42908 * 113.99640 * 180.02562 * 19 18 17
21 21 C 1.50697 * 109.46771 * 179.97438 * 20 19 18
22 22 H 1.07999 * 120.00513 * 359.97438 * 21 20 19
23 23 C 1.37881 * 119.99899 * 180.02562 * 21 20 19
24 24 N 1.31515 * 119.99664 * 359.97438 * 23 21 20
25 25 Si 1.86797 * 120.00208 * 179.97438 * 23 21 20
26 26 H 1.48498 * 109.47189 * 89.99454 * 25 23 21
27 27 H 1.48501 * 109.47141 * 210.00049 * 25 23 21
28 28 H 1.48504 * 109.47200 * 329.99617 * 25 23 21
29 29 H 1.09004 * 109.47118 * 299.99808 * 1 2 3
30 30 H 1.08994 * 109.47230 * 59.99750 * 1 2 3
31 31 H 1.09000 * 109.47100 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.47118 * 240.00192 * 2 1 3
33 33 H 1.08999 * 109.47667 * 120.00083 * 2 1 3
34 34 H 1.09001 * 109.46726 * 30.00511 * 4 3 2
35 35 H 1.09006 * 109.46834 * 149.99869 * 4 3 2
36 36 H 1.09004 * 109.47109 * 300.00349 * 5 4 3
37 37 H 1.08996 * 109.47239 * 59.99852 * 5 4 3
38 38 H 1.08999 * 109.47236 * 180.02562 * 5 4 3
39 39 H 1.09005 * 109.47173 * 59.99588 * 9 8 6
40 40 H 1.09003 * 109.46858 * 299.99731 * 9 8 6
41 41 H 1.09002 * 109.50428 * 299.13320 * 12 10 9
42 42 H 1.09001 * 109.50366 * 59.21224 * 12 10 9
43 43 H 1.08996 * 109.52236 * 62.24570 * 13 12 10
44 44 H 1.08999 * 109.52837 * 182.44230 * 13 12 10
45 45 H 1.08996 * 109.50227 * 177.59091 * 14 13 12
46 46 H 1.08998 * 109.49966 * 297.71532 * 14 13 12
47 47 H 1.08999 * 109.46036 * 180.80703 * 15 14 13
48 48 H 1.08999 * 109.46400 * 60.83404 * 15 14 13
49 49 H 1.09001 * 109.47171 * 291.71260 * 17 16 15
50 50 H 1.09003 * 109.46704 * 171.71335 * 17 16 15
51 51 H 1.08999 * 109.46633 * 302.35584 * 18 17 16
52 52 H 1.09005 * 109.46783 * 182.35606 * 18 17 16
53 53 H 1.08998 * 109.46958 * 299.99714 * 20 19 18
54 54 H 1.09003 * 109.46879 * 59.99526 * 20 19 18
55 55 H 0.97003 * 119.99586 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2625 2.0719 -1.2688
5 6 3.7074 1.8315 -1.7105
6 6 2.2430 2.0166 1.1672
7 8 2.6475 3.1624 1.1672
8 8 2.0191 1.3817 2.3332
9 6 2.2822 2.1275 3.5509
10 6 1.9717 1.2487 4.7643
11 1 2.0841 1.8355 5.6760
12 6 0.5348 0.7315 4.6647
13 6 0.2350 -0.1635 5.8703
14 6 1.2470 -1.3120 5.9076
15 6 2.6633 -0.7356 5.9712
16 7 2.9012 0.1123 4.7960
17 6 4.2959 0.5715 4.7520
18 6 5.2331 -0.6301 4.8890
19 8 5.0364 -1.5159 3.7851
20 6 5.8677 -2.6778 3.8171
21 6 5.5775 -3.5363 2.6130
22 1 4.8324 -3.2260 1.8954
23 6 6.2623 -4.7186 2.4280
24 7 7.1692 -5.0968 3.3022
25 14 5.9021 -5.7831 0.9360
26 1 6.7903 -5.3819 -0.1844
27 1 6.1453 -7.2085 1.2745
28 1 4.4843 -5.6054 0.5317
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8899
34 1 1.5816 1.6877 -2.0284
35 1 2.0955 3.1411 -1.1384
36 1 4.3883 2.2155 -0.9508
37 1 3.8744 0.7623 -1.8408
38 1 3.8892 2.3457 -2.6542
39 1 1.6521 3.0166 3.5758
40 1 3.3307 2.4244 3.5757
41 1 -0.1557 1.5748 4.6569
42 1 0.4178 0.1568 3.7460
43 1 0.3139 0.4213 6.7867
44 1 -0.7729 -0.5690 5.7814
45 1 1.0653 -1.9287 6.7878
46 1 1.1414 -1.9194 5.0088
47 1 3.3869 -1.5506 5.9834
48 1 2.7724 -0.1395 6.8772
49 1 4.4753 1.2676 5.5714
50 1 4.4837 1.0722 3.8021
51 1 5.0167 -1.1552 5.8194
52 1 6.2671 -0.2852 4.8984
53 1 6.9149 -2.3758 3.8045
54 1 5.6641 -3.2453 4.7252
55 1 7.6508 -5.9288 3.1723
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000495590087.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:13
Heat of formation + Delta-G solvation = -149.881796 kcal
Electronic energy + Delta-G solvation = -32734.902415 eV
Core-core repulsion = 28578.129316 eV
Total energy + Delta-G solvation = -4156.773100 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 342.235 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-41.66390 -40.42746 -38.49408 -37.99193 -36.90752 -35.17734 -34.48287 -33.18174
-32.72391 -30.44505 -30.36618 -28.73702 -27.63470 -25.39765 -24.70649 -24.45763
-24.43113 -22.61327 -22.04388 -21.35736 -20.33216 -18.90532 -18.60306 -18.22147
-17.63250 -17.40874 -17.32812 -16.54657 -16.35482 -15.99595 -15.78046 -15.43583
-15.23662 -15.07142 -14.93569 -14.79631 -14.53200 -14.32577 -14.13793 -13.97590
-13.61471 -13.57141 -13.44245 -13.35847 -12.99153 -12.95333 -12.81114 -12.77935
-12.57426 -12.46620 -12.31287 -12.14802 -12.08004 -11.95303 -11.93779 -11.70571
-11.50327 -11.47245 -11.27811 -11.12412 -11.05548 -10.81899 -10.16507 -9.82984
-9.10148 -8.30411 -6.41874 1.21613 1.39459 1.42539 1.54593 1.77157
2.35624 2.78925 2.91628 3.03413 3.23153 3.66547 3.75752 4.00346
4.01546 4.07578 4.11477 4.19799 4.21705 4.24692 4.29497 4.33411
4.37358 4.44431 4.45322 4.48495 4.55582 4.59847 4.60638 4.64498
4.73385 4.81908 4.87113 4.87932 4.93229 4.97229 4.98362 5.05703
5.06559 5.12468 5.19437 5.26129 5.30375 5.33803 5.35826 5.40055
5.55418 5.56585 5.57902 5.98876 6.15717 6.26498 6.29280 6.58043
6.86989 7.27146 7.30042 8.82086
Molecular weight = 342.24amu
Principal moments of inertia in cm(-1)
A = 0.007225 B = 0.004331 C = 0.003240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3874.426579 B = 6462.770279 C = 8639.652886
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.106 3.894
3 N -0.592 5.592
4 C 0.125 3.875
5 C -0.167 4.167
6 C 0.640 3.360
7 O -0.613 6.613
8 O -0.347 6.347
9 C 0.090 3.910
10 C 0.090 3.910
11 H 0.082 0.918
12 C -0.104 4.104
13 C -0.110 4.110
14 C -0.114 4.114
15 C 0.055 3.945
16 N -0.534 5.534
17 C 0.068 3.932
18 C 0.054 3.946
19 O -0.390 6.390
20 C 0.211 3.789
21 C -0.540 4.540
22 H 0.059 0.941
23 C 0.007 3.993
24 N -0.932 5.932
25 Si 0.980 3.020
26 H -0.269 1.269
27 H -0.274 1.274
28 H -0.262 1.262
29 H 0.046 0.954
30 H 0.069 0.931
31 H 0.078 0.922
32 H 0.095 0.905
33 H 0.064 0.936
34 H 0.116 0.884
35 H 0.077 0.923
36 H 0.029 0.971
37 H 0.057 0.943
38 H 0.092 0.908
39 H 0.085 0.915
40 H 0.059 0.941
41 H 0.083 0.917
42 H 0.060 0.940
43 H 0.073 0.927
44 H 0.076 0.924
45 H 0.076 0.924
46 H 0.048 0.952
47 H 0.055 0.945
48 H 0.046 0.954
49 H 0.069 0.931
50 H 0.065 0.935
51 H 0.046 0.954
52 H 0.041 0.959
53 H -0.021 1.021
54 H -0.018 1.018
55 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.668 14.167 -1.281 21.912
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.016 4.016
3 N -0.332 5.332
4 C 0.005 3.995
5 C -0.225 4.225
6 C 0.395 3.605
7 O -0.505 6.505
8 O -0.259 6.259
9 C 0.015 3.985
10 C -0.018 4.018
11 H 0.099 0.901
12 C -0.142 4.142
13 C -0.148 4.148
14 C -0.152 4.152
15 C -0.072 4.072
16 N -0.260 5.260
17 C -0.059 4.059
18 C -0.023 4.023
19 O -0.309 6.309
20 C 0.136 3.864
21 C -0.577 4.577
22 H 0.077 0.923
23 C -0.191 4.191
24 N -0.572 5.572
25 Si 0.802 3.198
26 H -0.194 1.194
27 H -0.199 1.199
28 H -0.186 1.186
29 H 0.066 0.934
30 H 0.088 0.912
31 H 0.097 0.903
32 H 0.113 0.887
33 H 0.083 0.917
34 H 0.134 0.866
35 H 0.095 0.905
36 H 0.048 0.952
37 H 0.076 0.924
38 H 0.110 0.890
39 H 0.103 0.897
40 H 0.077 0.923
41 H 0.102 0.898
42 H 0.078 0.922
43 H 0.092 0.908
44 H 0.094 0.906
45 H 0.095 0.905
46 H 0.067 0.933
47 H 0.074 0.926
48 H 0.064 0.936
49 H 0.087 0.913
50 H 0.083 0.917
51 H 0.064 0.936
52 H 0.059 0.941
53 H -0.004 1.004
54 H 0.000 1.000
55 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -16.647 14.116 -1.723 21.894
hybrid contribution 1.161 -0.203 0.555 1.303
sum -15.485 13.913 -1.168 20.851
Atomic orbital electron populations
1.22055 0.93976 1.03107 1.02192 1.21671 0.95775 0.80413 1.03782
1.47066 1.67527 1.15359 1.03207 1.21625 0.97504 0.97858 0.82540
1.22149 0.96278 1.02324 1.01793 1.18442 0.76788 0.82803 0.82445
1.90912 1.53149 1.18768 1.87720 1.86401 1.80760 1.45197 1.13589
1.23222 1.01313 0.93876 0.80137 1.21877 0.94388 0.90822 0.94674
0.90072 1.21525 0.93315 1.00025 0.99342 1.21535 0.98932 0.96246
0.98079 1.21549 0.93492 0.98323 1.01837 1.22121 0.98210 0.96508
0.90346 1.61740 1.02373 1.19761 1.42103 1.22071 0.87831 0.94688
1.01343 1.22637 0.97716 0.91617 0.90313 1.87947 1.63365 1.34226
1.45376 1.19767 0.88096 0.82621 0.95927 1.21319 1.22394 1.05638
1.08369 0.92264 1.25936 0.94242 0.98568 1.00385 1.70078 1.25531
1.24027 1.37535 0.85234 0.79214 0.77232 0.78084 1.19390 1.19917
1.18605 0.93446 0.91168 0.90308 0.88660 0.91700 0.86635 0.90503
0.95181 0.92413 0.88955 0.89731 0.92256 0.89810 0.92167 0.90842
0.90573 0.90530 0.93268 0.92637 0.93630 0.91308 0.91682 0.93551
0.94099 1.00377 0.99992 0.92155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.80 10.24 71.98 0.74 -2.07 16
2 C 0.11 2.46 6.13 86.38 0.53 2.99 16
3 N -0.59 -15.41 2.47 -952.15 -2.35 -17.76 16
4 C 0.13 2.54 6.13 86.38 0.53 3.07 16
5 C -0.17 -3.57 10.24 71.98 0.74 -2.83 16
6 C 0.64 20.43 8.40 129.79 1.09 21.52 16
7 O -0.61 -22.19 15.71 19.81 0.31 -21.88 16
8 O -0.35 -10.73 8.11 -55.47 -0.45 -11.18 16
9 C 0.09 2.33 4.71 71.98 0.34 2.67 16
10 C 0.09 2.09 2.24 44.94 0.10 2.19 16
11 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16
12 C -0.10 -2.14 5.19 30.64 0.16 -1.98 16
13 C -0.11 -2.02 6.00 30.68 0.18 -1.84 16
14 C -0.11 -2.76 6.09 30.65 0.19 -2.57 16
15 C 0.06 1.54 5.03 86.33 0.43 1.97 16
16 N -0.53 -15.97 4.46 -871.10 -3.89 -19.86 16
17 C 0.07 2.14 4.85 86.30 0.42 2.56 16
18 C 0.05 2.12 5.55 71.98 0.40 2.52 16
19 O -0.39 -19.89 10.23 -148.98 -1.52 -21.41 16
20 C 0.21 12.24 5.69 71.24 0.41 12.64 16
21 C -0.54 -32.83 9.43 25.60 0.24 -32.59 16
22 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16
23 C 0.01 0.40 5.46 84.66 0.46 0.86 16
24 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16
25 Si 0.98 44.79 29.54 68.60 2.03 46.81 16
26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
28 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16
29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16
30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
32 H 0.10 1.89 8.07 -2.38 -0.02 1.87 16
33 H 0.06 1.95 7.37 -2.39 -0.02 1.93 16
34 H 0.12 1.53 8.07 -2.39 -0.02 1.51 16
35 H 0.08 1.68 7.42 -2.38 -0.02 1.66 16
36 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16
37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
39 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16
40 H 0.06 1.68 6.12 -2.39 -0.01 1.67 16
41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
42 H 0.06 1.53 7.53 -2.39 -0.02 1.51 16
43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
46 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
47 H 0.06 1.89 5.79 -2.39 -0.01 1.88 16
48 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
49 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16
50 H 0.06 2.25 6.35 -2.39 -0.02 2.24 16
51 H 0.05 1.74 6.04 -2.39 -0.01 1.72 16
52 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16
53 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16
54 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16
55 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16
Total: -1.00 -75.44 431.95 2.19 -73.25
By element:
Atomic # 1 Polarization: 18.63 SS G_CDS: 0.83 Total: 19.45 kcal
Atomic # 6 Polarization: 2.18 SS G_CDS: 6.95 Total: 9.13 kcal
Atomic # 7 Polarization: -88.22 SS G_CDS: -5.96 Total: -94.18 kcal
Atomic # 8 Polarization: -52.81 SS G_CDS: -1.66 Total: -54.47 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal
Total: -75.44 2.19 -73.25 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000495590087.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.630 kcal
(2) G-P(sol) polarization free energy of solvation -75.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.070 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.882 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds