Wall clock time and date at job start Sat Apr 11 2020 06:48:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.53991 * 2 1
4 4 C 1.53035 * 109.50474 * 120.09734 * 2 1 3
5 5 N 1.46854 * 109.52518 * 179.12146 * 4 2 1
6 6 C 1.46901 * 110.99940 * 174.16366 * 5 4 2
7 7 C 1.53000 * 109.46769 * 190.25801 * 6 5 4
8 8 O 1.42899 * 109.47405 * 64.99669 * 7 6 5
9 9 C 1.42901 * 113.99649 * 179.97438 * 8 7 6
10 10 C 1.50700 * 109.46545 * 179.97438 * 9 8 7
11 11 H 1.07999 * 120.00589 * 0.02562 * 10 9 8
12 12 C 1.37885 * 119.99844 * 180.02562 * 10 9 8
13 13 N 1.31519 * 119.99649 * 180.02562 * 12 10 9
14 14 Si 1.86797 * 120.00005 * 0.02562 * 12 10 9
15 15 H 1.48501 * 109.47098 * 89.99698 * 14 12 10
16 16 H 1.48497 * 109.47124 * 210.00019 * 14 12 10
17 17 H 1.48503 * 109.46816 * 329.99950 * 14 12 10
18 18 C 1.46846 * 111.19765 * 298.25676 * 5 4 2
19 19 C 1.53044 * 109.51968 * 61.74063 * 18 5 4
20 20 C 1.53109 * 109.28150 * 300.81833 * 19 18 5
21 21 H 1.08999 * 109.52477 * 297.75220 * 20 19 18
22 22 N 1.46496 * 109.52611 * 177.62101 * 20 19 18
23 23 C 1.34777 * 119.99549 * 85.00055 * 22 20 19
24 24 O 1.21508 * 120.00653 * 0.02562 * 23 22 20
25 25 O 1.34643 * 119.99848 * 180.02562 * 23 22 20
26 26 C 1.45201 * 117.00266 * 180.02562 * 25 23 22
27 27 C 1.52996 * 109.46808 * 59.99759 * 26 25 23
28 28 C 1.52999 * 109.47327 * 180.02562 * 26 25 23
29 29 C 1.53004 * 109.46801 * 300.00239 * 26 25 23
30 30 H 1.09005 * 109.46710 * 180.09765 * 1 2 3
31 31 H 1.08994 * 109.47086 * 300.09735 * 1 2 3
32 32 H 1.08996 * 109.46912 * 60.09941 * 1 2 3
33 33 H 1.09005 * 109.46003 * 59.10891 * 4 2 1
34 34 H 1.08998 * 109.46413 * 299.13881 * 4 2 1
35 35 H 1.09002 * 109.47401 * 70.25509 * 6 5 4
36 36 H 1.09001 * 109.46874 * 310.25521 * 6 5 4
37 37 H 1.09002 * 109.46642 * 184.99944 * 7 6 5
38 38 H 1.09002 * 109.47069 * 304.99474 * 7 6 5
39 39 H 1.08990 * 109.47463 * 299.99806 * 9 8 7
40 40 H 1.08992 * 109.47069 * 60.00902 * 9 8 7
41 41 H 0.97004 * 119.99079 * 180.02562 * 13 12 10
42 42 H 1.08999 * 109.46435 * 181.75366 * 18 5 4
43 43 H 1.09001 * 109.46401 * 301.73977 * 18 5 4
44 44 H 1.09001 * 109.50195 * 60.76714 * 19 18 5
45 45 H 1.09008 * 109.49871 * 180.83589 * 19 18 5
46 46 H 0.96999 * 120.00612 * 265.00277 * 22 20 19
47 47 H 1.08997 * 109.47290 * 60.00331 * 27 26 25
48 48 H 1.09008 * 109.46869 * 180.02562 * 27 26 25
49 49 H 1.08991 * 109.47497 * 300.00014 * 27 26 25
50 50 H 1.08996 * 109.47128 * 59.99861 * 28 26 25
51 51 H 1.08996 * 109.46814 * 180.02562 * 28 26 25
52 52 H 1.08997 * 109.46833 * 299.99707 * 28 26 25
53 53 H 1.08991 * 109.47476 * 60.00004 * 29 26 25
54 54 H 1.09003 * 109.46821 * 180.02562 * 29 26 25
55 55 H 1.09004 * 109.46871 * 299.99821 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8945 1.0272 0.0000
4 6 2.0409 -0.7234 1.2480
5 7 3.5093 -0.7420 1.2379
6 6 4.0373 -1.3058 2.4874
7 6 5.5487 -1.0770 2.5516
8 8 5.8155 0.3248 2.6268
9 6 7.2057 0.6491 2.6917
10 6 7.3694 2.1453 2.7671
11 1 6.4989 2.7846 2.7660
12 6 8.6306 2.6982 2.8374
13 7 8.7734 4.0039 2.9037
14 14 10.1363 1.5927 2.8386
15 1 10.5845 1.3652 1.4412
16 1 11.2270 2.2426 3.6087
17 1 9.7943 0.2912 3.4668
18 6 4.0230 -1.4730 0.0725
19 6 3.5712 -0.7719 -1.2107
20 6 2.0413 -0.7238 -1.2488
21 1 1.6453 -1.7391 -1.2690
22 7 1.6037 -0.0037 -2.4471
23 6 1.4828 -0.6574 -3.6195
24 8 1.7364 -1.8440 -3.6826
25 8 1.0811 0.0046 -4.7210
26 6 0.9728 -0.7632 -5.9487
27 6 -0.0404 -1.8932 -5.7557
28 6 0.5071 0.1519 -7.0831
29 6 2.3382 -1.3570 -6.3009
30 1 -0.3633 -1.0277 0.0018
31 1 -0.3633 0.5153 0.8891
32 1 -0.3633 0.5123 -0.8909
33 1 1.6648 -1.7465 1.2543
34 1 1.6905 -0.2023 2.1389
35 1 3.8300 -2.3755 2.5196
36 1 3.5595 -0.8175 3.3368
37 1 5.9539 -1.5720 3.4342
38 1 6.0167 -1.4885 1.6572
39 1 7.6450 0.1902 3.5773
40 1 7.7084 0.2736 1.8005
41 1 9.6607 4.3928 2.9528
42 1 5.1121 -1.4961 0.1094
43 1 3.6374 -2.4924 0.0842
44 1 3.9678 0.2432 -1.2298
45 1 3.9402 -1.3230 -2.0758
46 1 1.4009 0.9436 -2.3968
47 1 -1.0131 -1.4702 -5.5047
48 1 -0.1214 -2.4698 -6.6772
49 1 0.2917 -2.5450 -4.9477
50 1 1.2293 0.9566 -7.2204
51 1 0.4254 -0.4246 -8.0045
52 1 -0.4654 0.5752 -6.8323
53 1 2.6703 -2.0088 -5.4930
54 1 2.2569 -1.9330 -7.2228
55 1 3.0600 -0.5519 -6.4383
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000495592737.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:16
Heat of formation + Delta-G solvation = -156.574304 kcal
Electronic energy + Delta-G solvation = -31360.766618 eV
Core-core repulsion = 27203.703310 eV
Total energy + Delta-G solvation = -4157.063308 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 342.235 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-41.91555 -40.53241 -38.78948 -38.01487 -36.34173 -35.14359 -34.79758 -33.74289
-32.58236 -30.69109 -29.07160 -28.35266 -28.28781 -27.37327 -25.25200 -23.94008
-23.80317 -22.88911 -21.78300 -21.38728 -20.63454 -19.09538 -19.00306 -17.88208
-17.43536 -17.29192 -17.14147 -16.63553 -16.42172 -15.92780 -15.82511 -15.61579
-15.48215 -15.19822 -14.98418 -14.71746 -14.53246 -14.32055 -14.16317 -13.73310
-13.69376 -13.32859 -13.18628 -13.13685 -12.91991 -12.87384 -12.86208 -12.82953
-12.71133 -12.62806 -12.54173 -12.31031 -12.22869 -12.08932 -11.85974 -11.79034
-11.59832 -11.41724 -11.36493 -11.25062 -11.06768 -10.90352 -10.27404 -10.14136
-9.13897 -8.35582 -6.42352 1.17131 1.32845 1.35814 1.46626 1.77535
2.29961 2.88219 2.96877 3.13547 3.17340 3.56120 3.76392 3.77240
3.81934 3.93819 3.96008 4.05834 4.22377 4.27672 4.34880 4.39239
4.43401 4.53764 4.55354 4.57171 4.62402 4.63123 4.68615 4.73111
4.77168 4.77532 4.79701 4.85290 4.87682 4.88776 4.95320 4.96833
5.04807 5.06121 5.12034 5.13643 5.24301 5.29107 5.30373 5.35823
5.45570 5.47114 5.59297 5.96465 6.16832 6.23035 6.42062 6.61979
6.83695 7.22109 7.35418 8.81619
Molecular weight = 342.24amu
Principal moments of inertia in cm(-1)
A = 0.012835 B = 0.002280 C = 0.002095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2181.063970 B =12279.189918 C =13358.849030
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.090 4.090
3 H 0.078 0.922
4 C 0.068 3.932
5 N -0.552 5.552
6 C 0.068 3.932
7 C 0.051 3.949
8 O -0.390 6.390
9 C 0.179 3.821
10 C -0.539 4.539
11 H 0.030 0.970
12 C 0.011 3.989
13 N -0.943 5.943
14 Si 0.954 3.046
15 H -0.262 1.262
16 H -0.273 1.273
17 H -0.246 1.246
18 C 0.062 3.938
19 C -0.123 4.123
20 C 0.179 3.821
21 H 0.083 0.917
22 N -0.696 5.696
23 C 0.648 3.352
24 O -0.591 6.591
25 O -0.371 6.371
26 C 0.125 3.875
27 C -0.177 4.177
28 C -0.136 4.136
29 C -0.181 4.181
30 H 0.058 0.942
31 H 0.070 0.930
32 H 0.061 0.939
33 H 0.047 0.953
34 H 0.085 0.915
35 H 0.073 0.927
36 H 0.082 0.918
37 H 0.056 0.944
38 H 0.045 0.955
39 H 0.010 0.990
40 H 0.004 0.996
41 H 0.272 0.728
42 H 0.067 0.933
43 H 0.046 0.954
44 H 0.059 0.941
45 H 0.063 0.937
46 H 0.414 0.586
47 H 0.063 0.937
48 H 0.089 0.911
49 H 0.062 0.938
50 H 0.066 0.934
51 H 0.102 0.898
52 H 0.071 0.929
53 H 0.062 0.938
54 H 0.090 0.910
55 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.255 -15.060 -16.066 29.919
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.109 4.109
3 H 0.096 0.904
4 C -0.060 4.060
5 N -0.278 5.278
6 C -0.059 4.059
7 C -0.026 4.026
8 O -0.309 6.309
9 C 0.103 3.897
10 C -0.577 4.577
11 H 0.048 0.952
12 C -0.187 4.187
13 N -0.582 5.582
14 Si 0.776 3.224
15 H -0.187 1.187
16 H -0.198 1.198
17 H -0.169 1.169
18 C -0.066 4.066
19 C -0.162 4.162
20 C 0.076 3.924
21 H 0.101 0.899
22 N -0.354 5.354
23 C 0.401 3.599
24 O -0.482 6.482
25 O -0.286 6.286
26 C 0.089 3.911
27 C -0.235 4.235
28 C -0.193 4.193
29 C -0.238 4.238
30 H 0.077 0.923
31 H 0.089 0.911
32 H 0.080 0.920
33 H 0.066 0.934
34 H 0.104 0.896
35 H 0.091 0.909
36 H 0.100 0.900
37 H 0.074 0.926
38 H 0.063 0.937
39 H 0.027 0.973
40 H 0.022 0.978
41 H 0.081 0.919
42 H 0.086 0.914
43 H 0.064 0.936
44 H 0.078 0.922
45 H 0.081 0.919
46 H 0.250 0.750
47 H 0.082 0.918
48 H 0.108 0.892
49 H 0.081 0.919
50 H 0.085 0.915
51 H 0.120 0.880
52 H 0.090 0.910
53 H 0.081 0.919
54 H 0.109 0.891
55 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -20.025 -14.880 -16.204 29.749
hybrid contribution 0.882 -0.410 0.158 0.986
sum -19.143 -15.291 -16.046 29.287
Atomic orbital electron populations
1.21743 0.92601 1.02474 1.02798 1.21397 0.96934 1.00290 0.92302
0.90381 1.22106 0.86147 0.99529 0.98204 1.61745 1.08603 1.55260
1.02142 1.22057 0.93037 0.98447 0.92398 1.22739 0.96829 0.83196
0.99874 1.87962 1.25051 1.23120 1.94767 1.20263 0.80470 0.94411
0.94511 1.21151 0.93461 0.91468 1.51605 0.95203 1.25840 1.02389
0.96759 0.93665 1.70042 1.24699 1.12308 1.51187 0.85623 0.77754
0.79507 0.79532 1.18670 1.19781 1.16907 1.21998 1.00128 0.94943
0.89521 1.21920 0.95882 1.01374 0.97045 1.20946 0.93216 0.96135
0.82141 0.89921 1.44809 1.70649 1.14030 1.05931 1.18241 0.76320
0.83730 0.81585 1.90881 1.56432 1.15354 1.85538 1.86321 1.80689
1.43669 1.17944 1.22398 0.96490 0.91933 0.80322 1.22452 0.98316
0.98403 1.04289 1.21886 1.02309 0.99545 0.95596 1.22481 0.95895
1.01845 1.03585 0.92272 0.91149 0.91952 0.93445 0.89646 0.90942
0.89991 0.92552 0.93725 0.97259 0.97845 0.91893 0.91423 0.93607
0.92186 0.91866 0.74997 0.91810 0.89177 0.91892 0.91537 0.87956
0.91042 0.91950 0.89081 0.92425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.03 9.06 71.98 0.65 -1.37 16
2 C -0.09 -1.73 2.45 -10.74 -0.03 -1.76 16
3 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
4 C 0.07 1.42 4.74 86.32 0.41 1.83 16
5 N -0.55 -15.09 4.60 -896.32 -4.13 -19.22 16
6 C 0.07 1.80 5.34 86.30 0.46 2.26 16
7 C 0.05 1.69 6.00 71.98 0.43 2.13 16
8 O -0.39 -18.29 10.27 -148.98 -1.53 -19.82 16
9 C 0.18 9.17 4.76 71.24 0.34 9.51 16
10 C -0.54 -33.42 9.99 25.60 0.26 -33.16 16
11 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16
12 C 0.01 0.67 5.47 84.66 0.46 1.13 16
13 N -0.94 -60.11 13.96 21.45 0.30 -59.81 16
14 Si 0.95 44.13 27.47 68.60 1.88 46.01 16
15 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16
16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
17 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16
18 C 0.06 1.61 5.30 86.33 0.46 2.06 16
19 C -0.12 -3.15 5.67 30.65 0.17 -2.98 16
20 C 0.18 3.83 1.94 45.07 0.09 3.92 16
21 H 0.08 1.89 7.58 -2.39 -0.02 1.87 16
22 N -0.70 -14.31 4.46 -569.75 -2.54 -16.85 16
23 C 0.65 15.52 8.02 129.79 1.04 16.56 16
24 O -0.59 -16.64 11.55 19.82 0.23 -16.41 16
25 O -0.37 -8.03 9.94 -55.53 -0.55 -8.58 16
26 C 0.12 2.14 1.13 -10.79 -0.01 2.13 16
27 C -0.18 -2.85 8.37 71.98 0.60 -2.25 16
28 C -0.14 -1.52 8.85 71.98 0.64 -0.88 16
29 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16
30 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16
31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
32 H 0.06 0.87 7.62 -2.39 -0.02 0.85 16
33 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16
34 H 0.09 1.74 8.01 -2.39 -0.02 1.72 16
35 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16
36 H 0.08 2.19 7.98 -2.39 -0.02 2.17 16
37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
38 H 0.04 1.43 6.23 -2.39 -0.01 1.42 16
39 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16
40 H 0.00 0.19 7.57 -2.39 -0.02 0.17 16
41 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16
42 H 0.07 1.93 6.13 -2.39 -0.01 1.92 16
43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
44 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16
45 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16
46 H 0.41 7.15 8.64 -92.71 -0.80 6.35 16
47 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16
48 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16
49 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16
50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
51 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
52 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
53 H 0.06 1.47 5.88 -2.39 -0.01 1.46 16
54 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
55 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16
Total: -1.00 -75.43 423.82 0.23 -75.20
By element:
Atomic # 1 Polarization: 22.99 SS G_CDS: -0.01 Total: 22.98 kcal
Atomic # 6 Polarization: -10.09 SS G_CDS: 6.58 Total: -3.52 kcal
Atomic # 7 Polarization: -89.51 SS G_CDS: -6.37 Total: -95.87 kcal
Atomic # 8 Polarization: -42.96 SS G_CDS: -1.85 Total: -44.81 kcal
Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal
Total: -75.43 0.23 -75.20 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000495592737.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -81.371 kcal
(2) G-P(sol) polarization free energy of solvation -75.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.805 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) -156.574 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.25 seconds