Wall clock time and date at job start Sat Apr 11 2020 06:47:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 110.77030 * 2 1
4 4 C 1.54320 * 110.70648 * 236.79361 * 2 1 3
5 5 N 1.47439 * 107.36954 * 219.41588 * 4 2 1
6 6 C 1.46902 * 111.00162 * 236.66048 * 5 4 2
7 7 C 1.53005 * 109.46814 * 294.17273 * 6 5 4
8 8 H 1.09001 * 109.47281 * 58.42043 * 7 6 5
9 9 O 1.42898 * 109.47035 * 298.41624 * 7 6 5
10 10 C 1.50704 * 109.46856 * 178.42129 * 7 6 5
11 11 H 1.08004 * 119.99975 * 359.97438 * 10 7 6
12 12 C 1.37876 * 119.99698 * 180.02562 * 10 7 6
13 13 N 1.31516 * 119.99591 * 179.97438 * 12 10 7
14 14 Si 1.86791 * 120.00216 * 359.97438 * 12 10 7
15 15 H 1.48498 * 109.47099 * 90.00482 * 14 12 10
16 16 H 1.48508 * 109.46999 * 210.00186 * 14 12 10
17 17 H 1.48501 * 109.47200 * 329.99854 * 14 12 10
18 18 C 1.47840 * 108.57023 * 358.93007 * 5 4 2
19 19 C 1.54902 * 104.79838 * 24.09518 * 18 5 4
20 20 H 1.09000 * 110.99226 * 81.05706 * 19 18 5
21 21 C 1.52995 * 110.99619 * 204.84218 * 19 18 5
22 22 C 1.53005 * 109.46893 * 293.54610 * 21 19 18
23 23 N 1.46504 * 109.47338 * 180.02562 * 22 21 19
24 24 C 1.34771 * 119.99781 * 179.97438 * 23 22 21
25 25 O 1.21505 * 120.00327 * 359.97438 * 24 23 22
26 26 O 1.34638 * 119.99746 * 179.97438 * 24 23 22
27 27 C 1.45202 * 117.00446 * 179.97438 * 26 24 23
28 28 C 1.53006 * 109.46616 * 59.99916 * 27 26 24
29 29 C 1.52999 * 109.47214 * 179.97438 * 27 26 24
30 30 C 1.52996 * 109.46921 * 300.00520 * 27 26 24
31 31 H 1.08991 * 109.47710 * 181.75191 * 1 2 3
32 32 H 1.09008 * 109.46962 * 301.75602 * 1 2 3
33 33 H 1.09004 * 109.46865 * 61.74402 * 1 2 3
34 34 H 1.08996 * 109.88699 * 99.92739 * 4 2 1
35 35 H 1.08997 * 109.88470 * 338.90682 * 4 2 1
36 36 H 1.08996 * 109.46998 * 54.17050 * 6 5 4
37 37 H 1.08995 * 109.47364 * 174.17007 * 6 5 4
38 38 H 0.96704 * 114.00483 * 300.00381 * 9 7 6
39 39 H 0.97001 * 120.00046 * 180.02562 * 13 12 10
40 40 H 1.08999 * 110.37741 * 142.92539 * 18 5 4
41 41 H 1.08998 * 110.37596 * 265.15035 * 18 5 4
42 42 H 1.09000 * 109.47191 * 53.54018 * 21 19 18
43 43 H 1.08995 * 109.47693 * 173.54575 * 21 19 18
44 44 H 1.09000 * 109.46719 * 299.99697 * 22 21 19
45 45 H 1.08994 * 109.47465 * 59.99321 * 22 21 19
46 46 H 0.97004 * 119.99409 * 359.97438 * 23 22 21
47 47 H 1.08998 * 109.47181 * 60.00626 * 28 27 26
48 48 H 1.08996 * 109.46920 * 180.02562 * 28 27 26
49 49 H 1.09002 * 109.47055 * 300.00192 * 28 27 26
50 50 H 1.08998 * 109.46889 * 60.00708 * 29 27 26
51 51 H 1.09006 * 109.46290 * 180.02562 * 29 27 26
52 52 H 1.08998 * 109.47519 * 299.99948 * 29 27 26
53 53 H 1.09002 * 109.47593 * 59.99292 * 30 27 26
54 54 H 1.09004 * 109.47355 * 179.97438 * 30 27 26
55 55 H 1.08998 * 109.47462 * 299.99463 * 30 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9165 1.0192 0.0000
4 6 2.0756 -0.7905 -1.2078
5 7 3.2481 -1.5531 -0.7414
6 6 4.4390 -1.2265 -1.5370
7 6 4.2373 -1.7043 -2.9765
8 1 3.3504 -1.2295 -3.3960
9 8 4.0688 -3.1233 -2.9882
10 6 5.4429 -1.3349 -3.8019
11 1 6.2700 -0.8113 -3.3456
12 6 5.4894 -1.6644 -5.1399
13 7 6.5413 -1.3415 -5.8604
14 14 4.0587 -2.5692 -5.9294
15 1 3.0828 -1.5842 -6.4610
16 1 4.5615 -3.4170 -7.0402
17 1 3.3943 -3.4260 -4.9145
18 6 3.4675 -1.2510 0.6891
19 6 2.0830 -0.7965 1.2144
20 1 1.4492 -1.6546 1.4378
21 6 2.2313 0.1058 2.4410
22 6 2.8039 -0.7058 3.6049
23 7 2.9454 0.1580 4.7797
24 6 3.4334 -0.3448 5.9309
25 8 3.7557 -1.5146 5.9946
26 8 3.5639 0.4492 7.0104
27 6 4.0959 -0.1600 8.2164
28 6 5.4972 -0.7065 7.9361
29 6 4.1709 0.8893 9.3273
30 6 3.1806 -1.3045 8.6560
31 1 -0.3634 -1.0271 0.0314
32 1 -0.3633 0.5409 0.8739
33 1 -0.3633 0.4865 -0.9053
34 1 2.3720 -0.1015 -1.9986
35 1 1.3122 -1.4743 -1.5788
36 1 4.5956 -0.1479 -1.5308
37 1 5.3097 -1.7225 -1.1082
38 1 4.8217 -3.6119 -2.6282
39 1 6.5739 -1.5730 -6.8018
40 1 3.8000 -2.1438 1.2189
41 1 4.1989 -0.4505 0.8001
42 1 2.9051 0.9299 2.2066
43 1 1.2554 0.5027 2.7204
44 1 2.1301 -1.5298 3.8393
45 1 3.7798 -1.1027 3.3256
46 1 2.6878 1.0919 4.7288
47 1 6.1493 0.1089 7.6230
48 1 5.8964 -1.1641 8.8413
49 1 5.4441 -1.4539 7.1445
50 1 3.1727 1.2790 9.5271
51 1 4.5707 0.4320 10.2325
52 1 4.8232 1.7044 9.0139
53 1 3.1276 -2.0519 7.8643
54 1 3.5802 -1.7621 9.5611
55 1 2.1823 -0.9152 8.8556
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000931956908.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:12
Heat of formation + Delta-G solvation = -167.053440 kcal
Electronic energy + Delta-G solvation = -30712.017800 eV
Core-core repulsion = 26554.500082 eV
Total energy + Delta-G solvation = -4157.517718 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 342.235 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.78681 -40.56723 -38.61506 -37.88619 -36.34428 -35.08820 -34.43591 -34.25916
-32.49670 -30.63466 -28.42251 -28.35341 -28.27806 -27.38222 -25.93922 -24.06923
-23.07200 -22.35464 -21.55265 -20.97801 -20.58799 -19.38414 -19.12678 -17.63540
-17.38763 -17.05023 -16.86048 -16.48307 -16.34961 -15.95401 -15.76534 -15.58074
-15.41962 -15.08388 -14.92712 -14.61906 -14.39566 -14.21705 -13.97235 -13.79039
-13.54606 -13.34367 -13.22106 -13.08247 -12.98610 -12.90715 -12.85284 -12.83078
-12.66925 -12.59964 -12.39818 -12.35774 -12.24686 -11.88995 -11.78290 -11.63399
-11.48535 -11.37807 -11.26191 -11.10723 -11.03271 -10.81434 -10.20424 -10.10836
-9.10927 -8.36743 -6.51367 1.18446 1.38269 1.44049 1.75489 1.77305
2.43507 3.01149 3.07007 3.20992 3.51030 3.68580 3.76557 3.81148
3.82787 3.96159 4.05494 4.16931 4.19940 4.33664 4.37735 4.42891
4.52107 4.54134 4.58123 4.62584 4.65226 4.68106 4.74033 4.77716
4.78278 4.85485 4.88945 4.89439 4.96254 4.97110 5.03684 5.11632
5.14135 5.18157 5.25794 5.26845 5.29233 5.36522 5.39668 5.44495
5.48398 5.55600 5.60308 6.06709 6.17293 6.21994 6.42133 6.61143
7.21680 7.35961 7.36978 8.77414
Molecular weight = 342.24amu
Principal moments of inertia in cm(-1)
A = 0.018996 B = 0.001887 C = 0.001786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1473.664236 B =14832.058119 C =15676.949534
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.099 4.099
3 H 0.079 0.921
4 C 0.041 3.959
5 N -0.532 5.532
6 C 0.051 3.949
7 C 0.210 3.790
8 H 0.047 0.953
9 O -0.574 6.574
10 C -0.568 4.568
11 H 0.035 0.965
12 C 0.029 3.971
13 N -0.939 5.939
14 Si 0.939 3.061
15 H -0.284 1.284
16 H -0.296 1.296
17 H -0.207 1.207
18 C 0.041 3.959
19 C -0.076 4.076
20 H 0.092 0.908
21 C -0.106 4.106
22 C 0.140 3.860
23 N -0.700 5.700
24 C 0.641 3.359
25 O -0.595 6.595
26 O -0.369 6.369
27 C 0.125 3.875
28 C -0.181 4.181
29 C -0.135 4.135
30 C -0.179 4.179
31 H 0.056 0.944
32 H 0.075 0.925
33 H 0.054 0.946
34 H 0.037 0.963
35 H 0.069 0.931
36 H 0.024 0.976
37 H 0.063 0.937
38 H 0.365 0.635
39 H 0.267 0.733
40 H 0.075 0.925
41 H 0.042 0.958
42 H 0.077 0.923
43 H 0.097 0.903
44 H 0.068 0.932
45 H 0.058 0.942
46 H 0.418 0.582
47 H 0.060 0.940
48 H 0.089 0.911
49 H 0.059 0.941
50 H 0.071 0.929
51 H 0.100 0.900
52 H 0.068 0.932
53 H 0.060 0.940
54 H 0.089 0.911
55 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.456 6.210 30.845 33.840
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.119 4.119
3 H 0.097 0.903
4 C -0.087 4.087
5 N -0.256 5.256
6 C -0.077 4.077
7 C 0.152 3.848
8 H 0.064 0.936
9 O -0.380 6.380
10 C -0.606 4.606
11 H 0.054 0.946
12 C -0.171 4.171
13 N -0.578 5.578
14 Si 0.763 3.237
15 H -0.211 1.211
16 H -0.223 1.223
17 H -0.129 1.129
18 C -0.087 4.087
19 C -0.096 4.096
20 H 0.110 0.890
21 C -0.144 4.144
22 C 0.018 3.982
23 N -0.360 5.360
24 C 0.395 3.605
25 O -0.486 6.486
26 O -0.284 6.284
27 C 0.089 3.911
28 C -0.238 4.238
29 C -0.192 4.192
30 C -0.236 4.236
31 H 0.075 0.925
32 H 0.094 0.906
33 H 0.073 0.927
34 H 0.056 0.944
35 H 0.087 0.913
36 H 0.043 0.957
37 H 0.082 0.918
38 H 0.212 0.788
39 H 0.076 0.924
40 H 0.094 0.906
41 H 0.060 0.940
42 H 0.095 0.905
43 H 0.116 0.884
44 H 0.087 0.913
45 H 0.076 0.924
46 H 0.255 0.745
47 H 0.079 0.921
48 H 0.108 0.892
49 H 0.078 0.922
50 H 0.090 0.910
51 H 0.119 0.881
52 H 0.087 0.913
53 H 0.079 0.921
54 H 0.108 0.892
55 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -12.849 5.257 30.481 33.494
hybrid contribution 0.993 0.766 -0.909 1.549
sum -11.855 6.023 29.573 32.425
Atomic orbital electron populations
1.21699 0.92663 1.02335 1.02516 1.22414 0.97493 0.98711 0.93241
0.90255 1.22950 0.93090 0.95320 0.97348 1.63522 1.03721 1.55620
1.02700 1.22618 0.92584 0.97456 0.95069 1.19509 0.94254 0.79876
0.91164 0.93572 1.86587 1.46030 1.19536 1.85815 1.21862 1.04418
1.38970 0.95327 0.94645 1.25850 0.98383 0.95073 0.97807 1.70084
1.31435 1.47971 1.08320 0.85982 0.79823 0.79902 0.78016 1.21084
1.22319 1.12852 1.23206 0.97550 0.99779 0.88122 1.22253 0.95321
0.98387 0.93603 0.89012 1.21653 1.03044 0.97834 0.91833 1.21364
1.01314 0.92905 0.82668 1.44728 1.67121 1.15587 1.08592 1.18342
0.77268 0.83310 0.81612 1.90911 1.55596 1.17487 1.84653 1.86305
1.78716 1.42869 1.20474 1.22397 0.93313 0.94478 0.80959 1.22484
0.95275 1.02039 1.04047 1.21882 1.03790 0.97793 0.95780 1.22466
0.99658 0.98407 1.03118 0.92462 0.90565 0.92660 0.94440 0.91306
0.95747 0.91807 0.78824 0.92435 0.90626 0.94002 0.90456 0.88412
0.91342 0.92409 0.74541 0.92095 0.89196 0.92158 0.90987 0.88099
0.91281 0.92085 0.89243 0.91733
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.13 9.14 71.98 0.66 -1.47 16
2 C -0.10 -1.99 3.02 -9.52 -0.03 -2.02 16
3 H 0.08 1.54 8.04 -2.39 -0.02 1.52 16
4 C 0.04 1.20 5.74 86.65 0.50 1.70 16
5 N -0.53 -17.46 5.08 -885.59 -4.50 -21.96 16
6 C 0.05 2.02 4.12 86.30 0.36 2.38 16
7 C 0.21 9.86 2.24 29.85 0.07 9.93 16
8 H 0.05 2.24 6.26 -2.39 -0.01 2.22 16
9 O -0.57 -26.13 10.04 -148.98 -1.50 -27.63 16
10 C -0.57 -32.32 9.34 25.60 0.24 -32.08 16
11 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16
12 C 0.03 1.68 5.47 84.65 0.46 2.14 16
13 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16
14 Si 0.94 45.98 26.99 68.60 1.85 47.83 16
15 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16
16 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16
17 H -0.21 -9.77 5.31 99.48 0.53 -9.24 16
18 C 0.04 1.04 5.37 86.77 0.47 1.50 16
19 C -0.08 -1.39 2.52 -9.32 -0.02 -1.41 16
20 H 0.09 1.66 8.04 -2.39 -0.02 1.64 16
21 C -0.11 -1.33 4.85 30.59 0.15 -1.18 16
22 C 0.14 2.25 5.52 86.38 0.48 2.73 16
23 N -0.70 -11.08 5.56 -590.86 -3.29 -14.37 16
24 C 0.64 13.80 8.06 129.79 1.05 14.84 16
25 O -0.60 -16.28 11.88 19.82 0.24 -16.04 16
26 O -0.37 -6.94 9.94 -55.47 -0.55 -7.49 16
27 C 0.12 1.91 1.13 -10.79 -0.01 1.90 16
28 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16
29 C -0.14 -1.21 8.85 71.98 0.64 -0.57 16
30 C -0.18 -2.71 8.37 71.98 0.60 -2.11 16
31 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16
32 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16
33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
34 H 0.04 1.24 6.72 -2.39 -0.02 1.23 16
35 H 0.07 2.10 7.82 -2.39 -0.02 2.08 16
36 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16
37 H 0.06 2.54 8.12 -2.39 -0.02 2.52 16
38 H 0.36 15.03 9.04 -74.05 -0.67 14.36 16
39 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16
40 H 0.08 1.92 8.07 -2.39 -0.02 1.91 16
41 H 0.04 1.07 7.67 -2.39 -0.02 1.05 16
42 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16
43 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16
44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
45 H 0.06 1.15 7.45 -2.39 -0.02 1.13 16
46 H 0.42 4.38 8.58 -92.71 -0.80 3.58 16
47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
48 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16
49 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16
50 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16
51 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16
52 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
53 H 0.06 1.29 5.88 -2.39 -0.01 1.28 16
54 H 0.09 0.96 8.14 -2.38 -0.02 0.95 16
55 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
Total: -1.00 -73.24 422.83 -2.03 -75.27
By element:
Atomic # 1 Polarization: 29.82 SS G_CDS: -0.78 Total: 29.04 kcal
Atomic # 6 Polarization: -12.27 SS G_CDS: 6.19 Total: -6.07 kcal
Atomic # 7 Polarization: -87.42 SS G_CDS: -7.49 Total: -94.91 kcal
Atomic # 8 Polarization: -49.35 SS G_CDS: -1.81 Total: -51.16 kcal
Atomic # 14 Polarization: 45.98 SS G_CDS: 1.85 Total: 47.83 kcal
Total: -73.24 -2.03 -75.27 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931956908.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -91.779 kcal
(2) G-P(sol) polarization free energy of solvation -73.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.021 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds