Wall clock time and date at job start Sat Apr 11 2020 06:48:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42902 * 109.46650 * 2 1
4 4 C 1.42901 * 113.99943 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.47425 * 180.02562 * 4 3 2
6 6 O 1.42899 * 109.47467 * 64.99751 * 5 4 3
7 7 C 1.42895 * 114.00271 * 180.02562 * 6 5 4
8 8 C 1.50699 * 109.47575 * 179.97438 * 7 6 5
9 9 O 1.21286 * 119.99302 * 359.97438 * 8 7 6
10 10 N 1.34770 * 120.00187 * 179.97438 * 8 7 6
11 11 C 1.46505 * 120.00002 * 180.02562 * 10 8 7
12 12 C 1.53001 * 109.47161 * 180.02562 * 11 10 8
13 13 H 1.08999 * 109.69952 * 299.31236 * 12 11 10
14 14 C 1.52763 * 109.50647 * 179.19007 * 12 11 10
15 15 C 1.53042 * 109.37918 * 185.70464 * 14 12 11
16 16 C 1.53038 * 109.53774 * 61.24371 * 15 14 12
17 17 C 1.53001 * 109.50154 * 178.67923 * 16 15 14
18 18 C 1.53004 * 109.52444 * 58.60197 * 16 15 14
19 19 C 1.53187 * 109.31521 * 298.63286 * 16 15 14
20 20 N 1.46923 * 109.58514 * 59.66713 * 12 11 10
21 21 C 1.36945 * 120.63417 * 353.41495 * 20 12 11
22 22 H 1.08004 * 119.99143 * 30.96028 * 21 20 12
23 23 C 1.38804 * 120.00073 * 210.95649 * 21 20 12
24 24 N 1.31618 * 120.00327 * 21.01119 * 23 21 20
25 25 Si 1.86809 * 119.99939 * 201.00638 * 23 21 20
26 26 H 1.48503 * 109.46840 * 270.00287 * 25 23 21
27 27 H 1.48497 * 109.46819 * 30.00103 * 25 23 21
28 28 H 1.48497 * 109.47085 * 150.00458 * 25 23 21
29 29 H 1.08997 * 109.46928 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.47512 * 299.99640 * 1 2 3
31 31 H 1.09006 * 109.47030 * 60.00372 * 1 2 3
32 32 H 1.09000 * 109.47167 * 240.00321 * 2 1 3
33 33 H 1.08992 * 109.47082 * 119.99854 * 2 1 3
34 34 H 1.08993 * 109.47226 * 59.99980 * 4 3 2
35 35 H 1.09010 * 109.46850 * 300.00001 * 4 3 2
36 36 H 1.09008 * 109.46586 * 304.99714 * 5 4 3
37 37 H 1.09001 * 109.47542 * 185.00240 * 5 4 3
38 38 H 1.09009 * 109.47123 * 59.99745 * 7 6 5
39 39 H 1.09001 * 109.47215 * 300.00180 * 7 6 5
40 40 H 0.97002 * 120.00221 * 359.97438 * 10 8 7
41 41 H 1.08996 * 109.46932 * 60.00023 * 11 10 8
42 42 H 1.09000 * 109.46980 * 299.99990 * 11 10 8
43 43 H 1.08999 * 109.55881 * 65.67488 * 14 12 11
44 44 H 1.08997 * 109.36155 * 305.61898 * 14 12 11
45 45 H 1.08998 * 109.46471 * 301.22098 * 15 14 12
46 46 H 1.09000 * 109.45583 * 181.26203 * 15 14 12
47 47 H 1.08998 * 109.47757 * 179.83988 * 17 16 15
48 48 H 1.08999 * 109.47023 * 299.84404 * 17 16 15
49 49 H 1.08998 * 109.46757 * 59.83756 * 17 16 15
50 50 H 1.09008 * 109.47012 * 300.14284 * 18 16 15
51 51 H 1.08996 * 109.47092 * 60.14501 * 18 16 15
52 52 H 1.09006 * 109.47315 * 180.14708 * 18 16 15
53 53 H 1.08996 * 109.58681 * 294.84959 * 19 16 15
54 54 H 1.08999 * 109.70973 * 174.48860 * 19 16 15
55 55 H 0.97002 * 120.00122 * 4.98040 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4308 1.4603 0.0006
5 6 3.8253 2.9385 0.0012
6 8 3.3975 3.5453 1.2222
7 6 3.7181 4.9340 1.3247
8 6 3.2228 5.4680 2.6440
9 8 2.6509 4.7317 3.4198
10 7 3.4152 6.7635 2.9616
11 6 2.9340 7.2825 4.2445
12 6 3.2773 8.7694 4.3541
13 1 4.3581 8.9016 4.3049
14 6 2.7582 9.3161 5.6828
15 6 2.9757 10.8303 5.7286
16 6 2.1940 11.4942 4.5927
17 6 2.3855 13.0108 4.6592
18 6 0.7073 11.1608 4.7320
19 6 2.7114 10.9720 3.2488
20 7 2.6405 9.5044 3.2528
21 6 1.9885 8.8347 2.2519
22 1 1.4998 7.8944 2.4608
23 6 1.9557 9.3642 0.9693
24 7 2.8554 10.2511 0.6002
25 14 0.6345 8.8181 -0.2332
26 1 1.1183 7.6414 -0.9991
27 1 -0.5944 8.4505 0.5151
28 1 0.3296 9.9281 -1.1713
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3634 0.5137 0.8899
31 1 -0.3633 0.5138 -0.8901
32 1 1.8934 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8899
34 1 3.8340 0.9767 -0.8891
35 1 3.8332 0.9768 0.8909
36 1 3.3497 3.4417 -0.8408
37 1 4.9081 3.0257 -0.0880
38 1 3.2401 5.4784 0.5102
39 1 4.7987 5.0630 1.2628
40 1 3.8729 7.3522 2.3413
41 1 3.4118 6.7379 5.0588
42 1 1.8534 7.1539 4.3061
43 1 3.2964 8.8462 6.5060
44 1 1.6939 9.0985 5.7720
45 1 4.0375 11.0483 5.6145
46 1 2.6262 11.2185 6.6853
47 1 1.8309 13.4830 3.8483
48 1 2.0173 13.3819 5.6156
49 1 3.4449 13.2478 4.5611
50 1 0.5713 10.0802 4.6857
51 1 0.3396 11.5326 5.6884
52 1 0.1516 11.6319 3.9211
53 1 3.7451 11.2875 3.1076
54 1 2.0956 11.3653 2.4399
55 1 3.5836 10.4811 1.1984
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001099353354.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:23
Heat of formation + Delta-G solvation = -136.858665 kcal
Electronic energy + Delta-G solvation = -31899.551432 eV
Core-core repulsion = 27743.343058 eV
Total energy + Delta-G solvation = -4156.208374 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 342.235 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.00723 -40.15854 -39.28964 -38.10929 -36.65546 -35.25501 -33.80190 -32.80250
-31.52979 -30.75054 -29.46958 -28.11006 -27.70351 -27.24815 -24.73720 -23.74589
-23.69151 -23.51549 -21.86556 -21.37018 -19.48182 -19.06590 -18.22175 -17.95312
-17.82084 -17.25258 -16.96098 -16.64513 -16.26855 -16.00287 -15.75748 -15.55959
-15.43039 -15.23485 -14.89087 -14.82320 -14.47669 -14.27830 -14.02790 -13.64611
-13.55301 -13.46987 -13.39489 -13.15751 -12.88941 -12.80117 -12.68702 -12.53279
-12.41303 -12.33507 -12.23779 -12.20439 -11.99196 -11.90801 -11.75578 -11.63731
-11.36241 -11.08936 -10.90621 -10.74733 -10.69528 -10.54947 -10.41712 -9.87249
-8.74281 -8.04424 -5.28332 1.55308 1.60327 1.65437 1.77392 1.96650
2.62788 2.75824 3.04906 3.32083 3.51264 3.83290 3.91641 3.94507
4.05963 4.10105 4.14117 4.15871 4.22988 4.23936 4.29886 4.33317
4.34611 4.44746 4.46116 4.49628 4.50827 4.58337 4.68357 4.72889
4.77514 4.83622 4.87404 4.87878 4.98113 5.01153 5.01469 5.06510
5.08710 5.15752 5.24089 5.25813 5.29583 5.43027 5.47144 5.57144
5.61626 5.73836 6.03716 6.06254 6.32352 6.54346 6.70257 7.16163
7.32198 7.88176 8.34776 9.16833
Molecular weight = 342.24amu
Principal moments of inertia in cm(-1)
A = 0.014236 B = 0.002784 C = 0.002567
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1966.328315 B =10054.294101 C =10906.882168
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.050 3.950
3 O -0.417 6.417
4 C 0.063 3.937
5 C 0.051 3.949
6 O -0.388 6.388
7 C 0.050 3.950
8 C 0.504 3.496
9 O -0.586 6.586
10 N -0.688 5.688
11 C 0.144 3.856
12 C 0.164 3.836
13 H 0.034 0.966
14 C -0.126 4.126
15 C -0.090 4.090
16 C -0.087 4.087
17 C -0.130 4.130
18 C -0.118 4.118
19 C 0.174 3.826
20 N -0.603 5.603
21 C -0.318 4.318
22 H 0.045 0.955
23 C -0.056 4.056
24 N -0.944 5.944
25 Si 1.086 2.914
26 H -0.284 1.284
27 H -0.294 1.294
28 H -0.293 1.293
29 H 0.095 0.905
30 H 0.045 0.955
31 H 0.057 0.943
32 H 0.068 0.932
33 H 0.051 0.949
34 H 0.098 0.902
35 H 0.056 0.944
36 H 0.058 0.942
37 H 0.098 0.902
38 H 0.082 0.918
39 H 0.109 0.891
40 H 0.412 0.588
41 H 0.070 0.930
42 H 0.038 0.962
43 H 0.080 0.920
44 H 0.056 0.944
45 H 0.057 0.943
46 H 0.075 0.925
47 H 0.041 0.959
48 H 0.070 0.930
49 H 0.054 0.946
50 H 0.043 0.957
51 H 0.061 0.939
52 H 0.029 0.971
53 H 0.003 0.997
54 H 0.039 0.961
55 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.275 -9.825 2.452 10.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.026 4.026
3 O -0.337 6.337
4 C -0.013 4.013
5 C -0.025 4.025
6 O -0.307 6.307
7 C -0.029 4.029
8 C 0.291 3.709
9 O -0.467 6.467
10 N -0.339 5.339
11 C 0.020 3.980
12 C 0.058 3.942
13 H 0.052 0.948
14 C -0.165 4.165
15 C -0.127 4.127
16 C -0.089 4.089
17 C -0.188 4.188
18 C -0.176 4.176
19 C 0.048 3.952
20 N -0.328 5.328
21 C -0.449 4.449
22 H 0.063 0.937
23 C -0.254 4.254
24 N -0.587 5.587
25 Si 0.915 3.085
26 H -0.211 1.211
27 H -0.221 1.221
28 H -0.219 1.219
29 H 0.114 0.886
30 H 0.064 0.936
31 H 0.076 0.924
32 H 0.086 0.914
33 H 0.070 0.930
34 H 0.115 0.885
35 H 0.075 0.925
36 H 0.076 0.924
37 H 0.116 0.884
38 H 0.100 0.900
39 H 0.127 0.873
40 H 0.249 0.751
41 H 0.088 0.912
42 H 0.057 0.943
43 H 0.098 0.902
44 H 0.075 0.925
45 H 0.076 0.924
46 H 0.093 0.907
47 H 0.061 0.939
48 H 0.089 0.911
49 H 0.073 0.927
50 H 0.062 0.938
51 H 0.080 0.920
52 H 0.048 0.952
53 H 0.021 0.979
54 H 0.058 0.942
55 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 3.024 -10.067 1.606 10.634
hybrid contribution 0.783 0.118 0.701 1.057
sum 3.807 -9.949 2.308 10.900
Atomic orbital electron populations
1.21782 0.93666 1.03330 1.02189 1.22650 0.96020 0.82903 1.01005
1.87980 1.22025 1.28128 1.95604 1.22673 0.81398 0.95049 1.02175
1.22916 1.00243 0.93064 0.86284 1.88014 1.81779 1.21329 1.39604
1.22184 1.02046 0.83815 0.94863 1.20697 0.79456 0.82239 0.88539
1.90632 1.44350 1.58678 1.53014 1.45863 1.58263 1.09004 1.20797
1.21190 0.98185 0.93821 0.84769 1.20756 0.94969 0.89136 0.89351
0.94841 1.21887 1.01349 0.96681 0.96622 1.21383 0.99406 0.94270
0.97683 1.21064 0.95817 0.95530 0.96450 1.21729 1.01357 0.94000
1.01686 1.21629 0.95032 1.00895 1.00005 1.20833 0.95911 0.83525
0.94885 1.44227 1.63203 1.00804 1.24521 1.19897 1.28817 1.06984
0.89181 0.93715 1.26329 1.02285 0.99565 0.97242 1.70835 1.12789
1.36584 1.38452 0.83193 0.74812 0.75569 0.74933 1.21083 1.22109
1.21916 0.88625 0.93596 0.92351 0.91352 0.93043 0.88463 0.92525
0.92368 0.88449 0.89984 0.87287 0.75084 0.91231 0.94334 0.90172
0.92503 0.92392 0.90653 0.93937 0.91121 0.92736 0.93784 0.92002
0.95170 0.97861 0.94215 0.92818
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.93 10.28 71.98 0.74 -2.19 16
2 C 0.05 1.01 6.66 71.98 0.48 1.49 16
3 O -0.42 -11.76 10.31 -144.35 -1.49 -13.25 16
4 C 0.06 1.37 6.32 71.98 0.45 1.83 16
5 C 0.05 1.22 6.32 71.98 0.45 1.68 16
6 O -0.39 -13.38 9.84 -125.56 -1.24 -14.61 16
7 C 0.05 1.64 6.42 71.24 0.46 2.09 16
8 C 0.50 20.27 7.91 87.66 0.69 20.96 16
9 O -0.59 -28.09 16.50 15.99 0.26 -27.83 16
10 N -0.69 -26.63 3.81 -463.06 -1.77 -28.40 16
11 C 0.14 5.50 4.43 86.38 0.38 5.88 16
12 C 0.16 5.99 3.00 44.83 0.13 6.13 16
13 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16
14 C -0.13 -3.85 5.00 30.53 0.15 -3.70 16
15 C -0.09 -2.56 4.71 30.62 0.14 -2.42 16
16 C -0.09 -2.90 0.77 -52.10 -0.04 -2.94 16
17 C -0.13 -3.68 8.48 71.98 0.61 -3.07 16
18 C -0.12 -4.06 7.99 71.98 0.58 -3.48 16
19 C 0.17 7.41 3.33 86.36 0.29 7.69 16
20 N -0.60 -26.29 2.26 -676.03 -1.53 -27.82 16
21 C -0.32 -15.78 6.86 84.03 0.58 -15.20 16
22 H 0.05 2.38 5.89 -2.91 -0.02 2.36 16
23 C -0.06 -2.91 4.77 84.86 0.41 -2.51 16
24 N -0.94 -52.35 12.50 21.65 0.27 -52.08 16
25 Si 1.09 50.43 29.97 68.60 2.06 52.49 16
26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16
28 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16
29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16
30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16
32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16
34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16
36 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16
37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16
38 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16
39 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16
40 H 0.41 16.17 7.35 -92.71 -0.68 15.49 16
41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16
42 H 0.04 1.68 7.45 -2.39 -0.02 1.66 16
43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16
44 H 0.06 1.87 6.33 -2.39 -0.02 1.86 16
45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
46 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
47 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16
48 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16
49 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16
50 H 0.04 1.70 5.97 -2.38 -0.01 1.69 16
51 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16
52 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16
53 H 0.00 0.15 7.78 -2.39 -0.02 0.13 16
54 H 0.04 1.99 6.43 -2.39 -0.02 1.98 16
55 H 0.26 14.53 6.45 -92.71 -0.60 13.93 16
Total: -1.00 -69.06 424.40 3.42 -65.64
By element:
Atomic # 1 Polarization: 33.27 SS G_CDS: 0.33 Total: 33.61 kcal
Atomic # 6 Polarization: 5.74 SS G_CDS: 6.51 Total: 12.25 kcal
Atomic # 7 Polarization: -105.27 SS G_CDS: -3.02 Total: -108.30 kcal
Atomic # 8 Polarization: -53.23 SS G_CDS: -2.46 Total: -55.69 kcal
Atomic # 14 Polarization: 50.43 SS G_CDS: 2.06 Total: 52.49 kcal
Total: -69.06 3.42 -65.64 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099353354.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.214 kcal
(2) G-P(sol) polarization free energy of solvation -69.063 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.277 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.859 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds