Wall clock time and date at job start Sat Apr 11 2020 06:47:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17403 * 1
3 3 C 1.47194 * 179.97438 * 2 1
4 4 N 1.46498 * 109.47333 * 93.42901 * 3 2 1
5 5 C 1.36899 * 119.99449 * 270.15276 * 4 3 2
6 6 H 1.07999 * 119.99814 * 193.92941 * 5 4 3
7 7 C 1.39032 * 120.00059 * 13.93081 * 5 4 3
8 8 N 1.31375 * 120.00040 * 10.30871 * 7 5 4
9 9 Si 1.86798 * 119.99969 * 190.30239 * 7 5 4
10 10 H 1.48504 * 109.46778 * 60.00210 * 9 7 5
11 11 H 1.48497 * 109.47226 * 180.02562 * 9 7 5
12 12 H 1.48503 * 109.47557 * 300.00440 * 9 7 5
13 13 C 1.34766 * 120.00322 * 90.15559 * 4 3 2
14 14 O 1.21612 * 120.00083 * 4.34916 * 13 4 3
15 15 C 1.47559 * 120.00173 * 184.34464 * 13 4 3
16 16 C 1.39767 * 120.12157 * 52.76221 * 15 13 4
17 17 C 1.37964 * 119.85543 * 180.02562 * 16 15 13
18 18 F 1.35106 * 119.94390 * 180.02562 * 17 16 15
19 19 C 1.38919 * 120.10988 * 359.97438 * 17 16 15
20 20 F 1.35098 * 119.87614 * 180.02562 * 19 17 16
21 21 C 1.38537 * 120.24699 * 0.02570 * 19 17 16
22 22 C 1.37994 * 120.14405 * 359.67724 * 21 19 17
23 23 Br 1.89104 * 120.05447 * 180.32219 * 22 21 19
24 24 H 4.40641 * 5.51459 * 180.02562 * 4 1 2
25 25 H 1.09014 * 109.46790 * 213.42670 * 3 2 1
26 26 H 1.09001 * 109.47673 * 333.41730 * 3 2 1
27 27 H 0.96998 * 120.00435 * 179.97438 * 8 7 5
28 28 H 1.08000 * 120.07051 * 359.97438 * 16 15 13
29 29 H 1.08005 * 119.92383 * 179.97438 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1343 0.0835 -1.3787
5 6 3.3600 -1.0613 -2.0948
6 1 3.9243 -1.0203 -3.0147
7 6 2.8627 -2.2765 -1.6377
8 7 2.0114 -2.3035 -0.6375
9 14 3.4049 -3.8709 -2.4460
10 1 4.8774 -4.0149 -2.3181
11 1 2.7352 -5.0165 -1.7794
12 1 3.0327 -3.8488 -3.8835
13 6 3.3614 1.2865 -1.9421
14 8 3.2371 2.3003 -1.2819
15 6 3.7610 1.3737 -3.3598
16 6 2.9971 0.7402 -4.3441
17 6 3.3760 0.8248 -5.6680
18 9 2.6387 0.2136 -6.6209
19 6 4.5139 1.5384 -6.0229
20 9 4.8803 1.6187 -7.3208
21 6 5.2742 2.1681 -5.0510
22 6 4.9013 2.0953 -3.7243
23 35 5.9360 2.9633 -2.4007
24 1 -1.0500 0.0002 0.0000
25 1 3.0089 0.8586 0.5662
26 1 3.0098 -0.9182 0.4599
27 1 1.6641 -3.1513 -0.3188
28 1 2.1127 0.1849 -4.0687
29 1 6.1581 2.7211 -5.3327
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000490994580.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:20
Heat of formation + Delta-G solvation = -26.488052 kcal
Electronic energy + Delta-G solvation = -21516.219541 eV
Core-core repulsion = 17703.107024 eV
Total energy + Delta-G solvation = -3813.112517 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 342.976 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-50.65150 -49.72181 -41.21390 -39.24167 -37.07867 -33.76150 -33.56606 -33.19873
-32.07053 -30.22082 -28.37886 -26.77637 -24.81387 -23.88276 -21.47012 -20.16017
-19.17530 -18.66040 -18.38526 -18.09970 -17.54836 -17.38742 -16.31391 -16.18938
-16.12568 -15.75245 -15.62270 -15.24503 -15.08265 -14.54696 -14.10469 -13.97607
-13.72497 -13.56660 -13.25370 -12.78824 -12.64519 -12.59036 -12.18660 -11.68543
-11.44946 -11.27756 -11.10380 -10.55201 -10.49451 -10.15534 -9.91996 -9.73672
-8.28077 -5.95585 -0.60691 -0.30798 0.42306 1.38217 1.47724 1.54990
1.65995 2.01772 2.16813 2.31633 2.45826 2.52698 2.96842 3.04852
3.11869 3.43239 3.72105 3.89284 3.99421 4.13841 4.46233 4.52573
4.61411 4.79832 4.88630 5.09146 5.35503 5.40707 5.44019 5.65133
6.32756 7.02218 7.16874 7.40057 7.80317 8.64817
Molecular weight = 342.98amu
Principal moments of inertia in cm(-1)
A = 0.010550 B = 0.006376 C = 0.004848
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2653.353584 B = 4390.223047 C = 5774.465453
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.264 4.264
2 C -0.135 4.135
3 C 0.242 3.758
4 N -0.426 5.426
5 C -0.353 4.353
6 H 0.107 0.893
7 C 0.007 3.993
8 N -0.871 5.871
9 Si 0.980 3.020
10 H -0.266 1.266
11 H -0.282 1.282
12 H -0.268 1.268
13 C 0.479 3.521
14 O -0.601 6.601
15 C -0.053 4.053
16 C -0.080 4.080
17 C 0.075 3.925
18 F -0.126 7.126
19 C 0.085 3.915
20 F -0.118 7.118
21 C -0.087 4.087
22 C -0.056 4.056
23 Br -0.012 7.012
24 H 0.232 0.768
25 H 0.066 0.934
26 H 0.110 0.890
27 H 0.273 0.727
28 H 0.150 0.850
29 H 0.191 0.809
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.401 4.791 -6.818 10.508
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.282 4.282
2 C -0.136 4.136
3 C 0.120 3.880
4 N -0.141 5.141
5 C -0.480 4.480
6 H 0.125 0.875
7 C -0.198 4.198
8 N -0.508 5.508
9 Si 0.803 3.197
10 H -0.191 1.191
11 H -0.207 1.207
12 H -0.193 1.193
13 C 0.268 3.732
14 O -0.488 6.488
15 C -0.058 4.058
16 C -0.101 4.101
17 C 0.055 3.945
18 F -0.104 7.104
19 C 0.063 3.937
20 F -0.097 7.097
21 C -0.107 4.107
22 C -0.137 4.137
23 Br 0.075 6.925
24 H 0.249 0.751
25 H 0.084 0.916
26 H 0.128 0.872
27 H 0.084 0.916
28 H 0.168 0.832
29 H 0.208 0.792
Dipole moment (debyes) X Y Z Total
from point charges 6.627 5.395 -5.917 10.395
hybrid contribution -0.657 -1.365 -0.813 1.719
sum 5.971 4.030 -6.730 9.858
Atomic orbital electron populations
1.25067 0.96304 1.06296 1.00562 1.23351 0.94902 0.95666 0.99711
1.18180 0.84637 1.01492 0.83736 1.43764 1.53931 1.05003 1.11446
1.19934 1.34893 0.84621 1.08593 0.87509 1.26000 0.94621 1.02033
0.97108 1.70122 1.26885 1.27673 1.26091 0.85169 0.78826 0.77155
0.78501 1.19075 1.20668 1.19342 1.17960 0.84891 0.83692 0.86693
1.90687 1.59417 1.35254 1.63425 1.19701 0.94717 0.96772 0.94622
1.21129 1.01287 0.98247 0.89416 1.17527 0.92171 0.98705 0.86140
1.91536 1.75620 1.80821 1.62442 1.17477 0.94941 1.01609 0.79635
1.91550 1.90940 1.94651 1.32547 1.21049 1.01292 0.99856 0.88515
1.21723 0.96413 1.01277 0.94306 1.96734 1.66703 1.76421 1.52677
0.75115 0.91563 0.87210 0.91618 0.83209 0.79229
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -11.18 19.25 74.32 1.43 -9.75 15
2 C -0.13 -6.35 11.38 31.12 0.35 -6.00 15
3 C 0.24 11.40 5.21 84.57 0.44 11.84 15
4 N -0.43 -20.19 2.58 -649.01 -1.67 -21.87 15
5 C -0.35 -16.41 8.23 84.09 0.69 -15.72 15
6 H 0.11 4.73 5.96 -2.91 -0.02 4.72 15
7 C 0.01 0.31 5.20 84.95 0.44 0.75 15
8 N -0.87 -41.72 8.52 21.68 0.18 -41.54 15
9 Si 0.98 37.06 29.57 68.60 2.03 39.08 15
10 H -0.27 -9.83 7.11 99.48 0.71 -9.12 15
11 H -0.28 -10.63 7.11 99.48 0.71 -9.92 15
12 H -0.27 -10.02 7.11 99.48 0.71 -9.32 15
13 C 0.48 21.92 6.50 86.70 0.56 22.48 15
14 O -0.60 -29.79 15.33 -4.07 -0.06 -29.86 15
15 C -0.05 -2.04 4.74 -20.08 -0.10 -2.14 15
16 C -0.08 -2.88 7.85 22.57 0.18 -2.70 15
17 C 0.08 2.36 7.30 22.37 0.16 2.52 15
18 F -0.13 -3.95 17.17 44.97 0.77 -3.18 15
19 C 0.08 2.33 7.31 22.50 0.16 2.49 15
20 F -0.12 -3.05 17.17 44.97 0.77 -2.28 15
21 C -0.09 -2.24 9.75 22.28 0.22 -2.02 15
22 C -0.06 -1.82 6.25 22.59 0.14 -1.68 15
23 Br -0.01 -0.37 31.72 -20.37 -0.65 -1.01 15
24 H 0.23 7.64 7.80 -4.42 -0.03 7.61 15
25 H 0.07 3.08 7.36 -2.38 -0.02 3.06 15
26 H 0.11 5.29 6.22 -2.39 -0.01 5.28 15
27 H 0.27 12.62 8.31 -92.71 -0.77 11.85 15
28 H 0.15 5.74 7.59 -2.91 -0.02 5.72 15
29 H 0.19 3.50 8.06 -2.91 -0.02 3.48 15
Total: -1.00 -54.50 293.62 7.29 -47.22
By element:
Atomic # 1 Polarization: 12.13 SS G_CDS: 1.22 Total: 13.35 kcal
Atomic # 6 Polarization: -4.61 SS G_CDS: 4.69 Total: 0.08 kcal
Atomic # 7 Polarization: -61.91 SS G_CDS: -1.49 Total: -63.40 kcal
Atomic # 8 Polarization: -29.79 SS G_CDS: -0.06 Total: -29.86 kcal
Atomic # 9 Polarization: -7.00 SS G_CDS: 1.54 Total: -5.45 kcal
Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.08 kcal
Atomic # 35 Polarization: -0.37 SS G_CDS: -0.65 Total: -1.01 kcal
Total: -54.50 7.29 -47.22 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000490994580.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.730 kcal
(2) G-P(sol) polarization free energy of solvation -54.505 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.218 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.488 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds