Wall clock time and date at job start Sat Apr 11 2020 06:48:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13598 * 1
3 3 C 1.47194 * 179.97438 * 2 1
4 4 C 1.53001 * 109.47473 * 54.76703 * 3 2 1
5 5 N 1.46498 * 109.47283 * 179.97438 * 4 3 2
6 6 C 1.46503 * 119.99997 * 89.22181 * 5 4 3
7 7 C 1.50701 * 109.47149 * 94.56678 * 6 5 4
8 8 H 1.08000 * 119.99873 * 0.02562 * 7 6 5
9 9 C 1.37875 * 120.00221 * 179.97438 * 7 6 5
10 10 N 1.31518 * 119.99742 * 0.02562 * 9 7 6
11 11 Si 1.86803 * 120.00202 * 180.02562 * 9 7 6
12 12 H 1.48501 * 109.46946 * 90.00181 * 11 9 7
13 13 H 1.48493 * 109.47028 * 210.00368 * 11 9 7
14 14 H 1.48499 * 109.47063 * 330.00349 * 11 9 7
15 15 C 1.34781 * 120.00068 * 269.49824 * 5 4 3
16 16 O 1.21625 * 119.99928 * 5.39413 * 15 5 4
17 17 C 1.47170 * 119.99883 * 185.39864 * 15 5 4
18 18 N 1.30568 * 125.53065 * 187.00317 * 17 15 5
19 19 C 1.30672 * 115.92818 * 179.97438 * 18 17 15
20 20 C 1.34391 * 115.74955 * 0.02562 * 19 18 17
21 21 Br 1.89100 * 125.46112 * 179.97438 * 20 19 18
22 22 S 1.71075 * 109.07536 * 359.76468 * 20 19 18
23 23 H 1.09003 * 109.47204 * 294.76987 * 3 2 1
24 24 H 1.09001 * 109.47400 * 174.76719 * 3 2 1
25 25 H 1.09003 * 109.46673 * 59.99959 * 4 3 2
26 26 H 1.08994 * 109.46985 * 299.99994 * 4 3 2
27 27 H 1.09000 * 109.47244 * 214.56901 * 6 5 4
28 28 H 1.08994 * 109.46858 * 334.56761 * 6 5 4
29 29 H 0.97002 * 119.99737 * 179.97438 * 10 9 7
30 30 H 1.07994 * 122.12557 * 179.97438 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6079 0.0007 0.0000
4 6 3.1184 -0.8313 -1.1782
5 7 4.5834 -0.8301 -1.1786
6 6 5.3169 -1.8557 -0.4326
7 6 5.6667 -2.9944 -1.3556
8 1 5.3725 -2.9576 -2.3941
9 6 6.3633 -4.0827 -0.8746
10 7 6.7220 -4.1272 0.3899
11 14 6.7976 -5.4939 -2.0190
12 1 8.1205 -5.2363 -2.6425
13 1 6.8533 -6.7597 -1.2447
14 1 5.7642 -5.6072 -3.0794
15 6 5.2564 0.1178 -1.8605
16 8 4.6514 1.0282 -2.3940
17 6 6.7232 0.0512 -1.9598
18 7 7.4912 0.9713 -2.4779
19 6 8.7730 0.7174 -2.4685
20 6 9.1313 -0.4590 -1.9266
21 35 10.9030 -1.1016 -1.7722
22 16 7.7279 -1.2795 -1.3936
23 1 2.9715 -0.4298 0.9331
24 1 2.9708 1.0242 -0.0937
25 1 2.7548 -0.4009 -2.1114
26 1 2.7555 -1.8548 -1.0845
27 1 6.2311 -1.4243 -0.0250
28 1 4.6953 -2.2264 0.3823
29 1 7.2118 -4.8930 0.7284
30 1 9.4983 1.4087 -2.8715
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000616174618.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:15
Heat of formation + Delta-G solvation = 27.436559 kcal
Electronic energy + Delta-G solvation = -19247.090118 eV
Core-core repulsion = 16022.449086 eV
Total energy + Delta-G solvation = -3224.641032 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 342.973 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.17043 -40.04530 -37.88124 -36.93291 -34.91291 -33.34765 -32.63178 -30.01542
-29.28633 -27.17540 -25.29664 -24.83742 -22.11044 -19.92775 -19.33401 -18.82715
-18.36756 -17.71333 -17.11656 -16.49959 -16.21448 -16.03095 -15.65094 -15.21833
-14.72598 -14.42712 -14.34797 -14.24099 -13.96603 -13.58658 -13.49534 -13.01688
-12.75009 -12.72047 -12.28048 -12.24058 -12.14309 -11.81158 -11.76844 -11.36771
-11.03579 -10.77870 -10.41889 -10.06978 -9.70271 -9.61762 -8.28830 -6.34349
-0.76060 0.07302 0.86432 0.92463 1.32520 1.46346 1.53772 1.55981
1.64583 1.82884 1.99587 2.25903 2.40078 3.06803 3.11416 3.40260
3.95952 4.12612 4.17562 4.32568 4.57627 4.67573 4.87764 5.03059
5.04164 5.12550 5.55925 5.68449 5.85146 6.24533 6.58608 6.60812
6.72643 7.09215 7.26937 8.73376
Molecular weight = 342.97amu
Principal moments of inertia in cm(-1)
A = 0.012909 B = 0.004929 C = 0.003806
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2168.459280 B = 5679.512938 C = 7355.061957
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.490 5.490
2 C 0.246 3.754
3 C -0.034 4.034
4 C 0.126 3.874
5 N -0.583 5.583
6 C 0.224 3.776
7 C -0.541 4.541
8 H 0.066 0.934
9 C 0.060 3.940
10 N -0.877 5.877
11 Si 0.918 3.082
12 H -0.271 1.271
13 H -0.278 1.278
14 H -0.270 1.270
15 C 0.594 3.406
16 O -0.555 6.555
17 C -0.070 4.070
18 N -0.438 5.438
19 C 0.047 3.953
20 C -0.356 4.356
21 Br 0.022 6.978
22 S 0.437 5.563
23 H 0.138 0.862
24 H 0.118 0.882
25 H 0.081 0.919
26 H 0.107 0.893
27 H 0.039 0.961
28 H 0.072 0.928
29 H 0.277 0.723
30 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.382 1.851 0.647 7.638
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.168 5.168
2 C -0.071 4.071
3 C -0.075 4.075
4 C 0.003 3.997
5 N -0.314 5.314
6 C 0.101 3.899
7 C -0.587 4.587
8 H 0.084 0.916
9 C -0.148 4.148
10 N -0.513 5.513
11 Si 0.744 3.256
12 H -0.196 1.196
13 H -0.203 1.203
14 H -0.194 1.194
15 C 0.380 3.620
16 O -0.434 6.434
17 C -0.341 4.341
18 N -0.156 5.156
19 C -0.116 4.116
20 C -0.558 4.558
21 Br 0.104 6.896
22 S 0.703 5.297
23 H 0.156 0.844
24 H 0.136 0.864
25 H 0.100 0.900
26 H 0.125 0.875
27 H 0.056 0.944
28 H 0.089 0.911
29 H 0.087 0.913
30 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges 5.692 1.534 0.880 5.960
hybrid contribution 1.171 -0.072 -1.076 1.592
sum 6.862 1.462 -0.196 7.019
Atomic orbital electron populations
1.81225 1.14373 1.10768 1.10457 1.29156 0.95005 0.91393 0.91524
1.19739 0.80156 1.04846 1.02795 1.21366 0.77914 1.02083 0.98377
1.47878 1.07009 1.27950 1.48532 1.19716 0.92252 0.85128 0.92770
1.21676 1.36438 1.03185 0.97358 0.91582 1.25268 0.94629 0.99025
0.95863 1.69909 1.36096 1.31531 1.13716 0.86113 0.79428 0.80081
0.80007 1.19581 1.20303 1.19408 1.16825 0.84060 0.82119 0.79032
1.90741 1.68782 1.35127 1.48791 1.27441 0.99448 0.97201 1.09993
1.66719 1.03763 1.29246 1.15870 1.21793 0.91573 0.95881 1.02350
1.29406 1.03483 1.05860 1.17074 1.96590 1.08647 1.86961 1.97374
1.87309 0.87784 1.11121 1.43464 0.84389 0.86400 0.90030 0.87515
0.94379 0.91050 0.91290 0.79511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.49 -14.85 18.54 20.00 0.37 -14.48 16
2 C 0.25 6.07 15.43 89.44 1.38 7.45 16
3 C -0.03 -0.71 6.03 28.79 0.17 -0.54 16
4 C 0.13 3.30 5.31 86.38 0.46 3.76 16
5 N -0.58 -19.10 2.47 -830.34 -2.05 -21.14 16
6 C 0.22 7.92 4.72 85.63 0.40 8.32 16
7 C -0.54 -21.52 6.63 25.60 0.17 -21.35 16
8 H 0.07 2.76 7.81 -2.91 -0.02 2.73 16
9 C 0.06 2.46 4.87 84.65 0.41 2.87 16
10 N -0.88 -37.17 13.29 21.45 0.28 -36.89 16
11 Si 0.92 34.31 29.54 68.60 2.03 36.33 16
12 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16
13 H -0.28 -10.34 7.11 99.48 0.71 -9.64 16
14 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16
15 C 0.59 22.64 7.62 86.59 0.66 23.30 16
16 O -0.55 -23.34 16.70 -4.11 -0.07 -23.41 16
17 C -0.07 -2.70 7.18 87.23 0.63 -2.07 16
18 N -0.44 -16.92 10.60 -190.30 -2.02 -18.93 16
19 C 0.05 1.57 11.19 83.99 0.94 2.51 16
20 C -0.36 -11.71 6.82 66.94 0.46 -11.25 16
21 Br 0.02 0.60 34.08 -20.37 -0.69 -0.09 16
22 S 0.44 15.84 15.74 -56.49 -0.89 14.95 16
23 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16
24 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16
25 H 0.08 2.26 7.48 -2.39 -0.02 2.24 16
26 H 0.11 2.57 8.08 -2.39 -0.02 2.55 16
27 H 0.04 1.44 4.93 -18.82 -0.09 1.35 16
28 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16
29 H 0.28 11.38 8.31 -92.71 -0.77 10.61 16
30 H 0.19 5.07 8.06 -2.91 -0.02 5.05 16
Total: -1.00 -51.33 307.04 3.76 -47.57
By element:
Atomic # 1 Polarization: 1.98 SS G_CDS: 1.12 Total: 3.09 kcal
Atomic # 6 Polarization: 7.33 SS G_CDS: 5.68 Total: 13.01 kcal
Atomic # 7 Polarization: -88.04 SS G_CDS: -3.41 Total: -91.45 kcal
Atomic # 8 Polarization: -23.34 SS G_CDS: -0.07 Total: -23.41 kcal
Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.33 kcal
Atomic # 16 Polarization: 15.84 SS G_CDS: -0.89 Total: 14.95 kcal
Atomic # 35 Polarization: 0.60 SS G_CDS: -0.69 Total: -0.09 kcal
Total: -51.33 3.76 -47.57 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000616174618.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.006 kcal
(2) G-P(sol) polarization free energy of solvation -51.332 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.437 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds