Wall clock time and date at job start Sat Apr 11 2020 06:46:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47533 * 2 1
4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3
5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1
6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1
7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4
10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4
11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4
12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3
13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1
14 14 O 1.21668 * 119.99850 * 0.02562 * 13 12 2
15 15 C 1.46866 * 119.99920 * 180.02562 * 13 12 2
16 16 C 1.33002 * 125.21922 * 180.02562 * 15 13 12
17 17 N 1.36248 * 116.11536 * 179.97438 * 16 15 13
18 18 C 1.39115 * 139.30585 * 179.97438 * 17 16 15
19 19 Br 1.89101 * 126.44624 * 359.97438 * 18 17 16
20 20 C 1.34273 * 107.10569 * 179.97438 * 18 17 16
21 21 N 1.34013 * 108.45416 * 0.02562 * 20 18 17
22 22 C 1.32247 * 109.19133 * 359.97438 * 21 20 18
23 23 S 1.75790 * 125.22096 * 359.69650 * 15 13 12
24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3
25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3
27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4
28 28 H 0.96992 * 120.00062 * 265.00053 * 12 2 1
29 29 H 1.08008 * 121.94142 * 359.97438 * 16 15 13
30 30 H 1.08001 * 125.77370 * 179.97438 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7104 1.2304
5 1 2.6532 -1.5885 1.1313
6 6 1.6993 -0.2394 2.4827
7 7 0.9436 0.8301 2.6034
8 14 2.3215 -1.1204 4.0079
9 1 3.8065 -1.1210 4.0080
10 1 1.8271 -0.4200 5.2204
11 1 1.8261 -2.5204 4.0076
12 7 2.0184 -0.6906 -1.1962
13 6 2.1470 -0.0182 -2.3572
14 8 1.8580 1.1624 -2.4117
15 6 2.6361 -0.7106 -3.5565
16 6 2.8028 -0.1504 -4.7512
17 7 3.2689 -0.9674 -5.7369
18 6 3.6039 -0.9079 -7.0858
19 35 3.5017 0.6147 -8.2026
20 6 4.0135 -2.1350 -7.4455
21 7 3.9415 -2.9372 -6.3745
22 6 3.4946 -2.2436 -5.3410
23 16 3.0986 -2.4049 -3.6312
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5139 -0.8900
27 1 0.7096 1.1617 3.4844
28 1 2.2491 -1.6316 -1.1527
29 1 2.5816 0.8916 -4.9296
30 1 4.3443 -2.4264 -8.4315
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000815151350.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:10
Heat of formation + Delta-G solvation = 64.560993 kcal
Electronic energy + Delta-G solvation = -18648.580511 eV
Core-core repulsion = 15425.549315 eV
Total energy + Delta-G solvation = -3223.031196 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 342.973 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-43.04254 -39.32357 -36.68018 -35.01699 -32.63695 -32.50552 -30.93199 -29.22601
-28.62892 -25.40038 -24.83941 -23.31164 -21.56836 -20.46938 -19.78740 -18.68451
-17.51668 -16.62831 -16.25138 -15.85318 -15.55719 -14.78064 -14.58014 -14.48514
-14.21833 -13.48005 -13.27130 -12.58680 -12.29165 -11.84041 -11.74455 -11.64825
-11.22458 -11.20909 -11.05601 -10.90053 -10.49300 -10.46256 -10.43916 -10.33621
-9.67735 -9.23631 -9.18322 -8.68614 -8.21440 -7.99729 -6.22699 -4.33145
0.22307 0.47885 0.77285 1.30705 1.60827 2.14556 2.36871 3.20840
3.26464 3.27151 3.38133 3.67226 4.15787 4.29100 4.32693 4.86377
4.89649 5.10217 5.22521 5.49070 5.95770 6.21093 6.67608 6.78228
6.97447 7.14772 7.14931 7.32766 7.54786 7.74115 7.99706 8.32880
8.53154 8.76998 9.34336 10.83285
Molecular weight = 342.97amu
Principal moments of inertia in cm(-1)
A = 0.027157 B = 0.002734 C = 0.002547
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1030.783284 B =10237.966465 C =10990.325626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.265 3.735
3 H 0.055 0.945
4 C -0.540 4.540
5 H 0.063 0.937
6 C 0.069 3.931
7 N -0.882 5.882
8 Si 0.904 3.096
9 H -0.275 1.275
10 H -0.285 1.285
11 H -0.275 1.275
12 N -0.691 5.691
13 C 0.582 3.418
14 O -0.530 6.530
15 C -0.225 4.225
16 C 0.106 3.894
17 N -0.388 5.388
18 C -0.047 4.047
19 Br 0.029 6.971
20 C 0.077 3.923
21 N -0.453 5.453
22 C 0.157 3.843
23 S 0.245 5.755
24 H 0.094 0.906
25 H 0.029 0.971
26 H 0.017 0.983
27 H 0.267 0.733
28 H 0.388 0.612
29 H 0.197 0.803
30 H 0.197 0.803
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.909 -3.787 -20.684 21.593
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.164 3.836
3 H 0.073 0.927
4 C -0.578 4.578
5 H 0.081 0.919
6 C -0.135 4.135
7 N -0.519 5.519
8 Si 0.731 3.269
9 H -0.200 1.200
10 H -0.211 1.211
11 H -0.200 1.200
12 N -0.338 5.338
13 C 0.363 3.637
14 O -0.409 6.409
15 C -0.347 4.347
16 C -0.028 4.028
17 N -0.067 5.067
18 C -0.240 4.240
19 Br 0.112 6.888
20 C -0.077 4.077
21 N -0.177 5.177
22 C -0.209 4.209
23 S 0.497 5.503
24 H 0.113 0.887
25 H 0.049 0.951
26 H 0.036 0.964
27 H 0.077 0.923
28 H 0.221 0.779
29 H 0.214 0.786
30 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges 4.781 -4.075 -19.941 20.907
hybrid contribution 0.191 0.758 -0.017 0.782
sum 4.971 -3.316 -19.958 20.833
Atomic orbital electron populations
1.22110 0.97915 0.99509 1.01254 1.18922 0.91368 0.94101 0.79165
0.92743 1.21133 1.33037 1.13547 0.90103 0.91894 1.24870 0.94623
0.94895 0.99095 1.69877 1.35495 1.22259 1.24264 0.86467 0.79252
0.79627 0.81566 1.20048 1.21051 1.20011 1.46523 1.63819 1.13389
1.10066 1.16586 0.79249 0.86344 0.81514 1.90834 1.51400 1.14550
1.84142 1.24107 1.12727 0.98902 0.99009 1.20575 0.98301 0.98560
0.85340 1.43498 1.45163 1.10002 1.08070 1.23031 1.19806 0.97858
0.83255 1.96795 1.98053 1.34472 1.59524 1.22451 0.99722 0.86720
0.98817 1.70797 1.20444 1.30037 0.96379 1.26783 1.07472 0.84180
1.02507 1.85025 1.68528 1.04508 0.92255 0.88743 0.95146 0.96438
0.92323 0.77867 0.78605 0.78586
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.51 9.26 37.16 0.34 -3.17 16
2 C 0.27 6.38 2.56 -69.08 -0.18 6.20 16
3 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16
4 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16
5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16
6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16
7 N -0.88 -23.86 11.32 55.43 0.63 -23.23 16
8 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16
9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16
10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16
11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
12 N -0.69 -13.58 5.07 -56.19 -0.28 -13.86 16
13 C 0.58 10.90 7.75 -12.77 -0.10 10.80 16
14 O -0.53 -11.65 16.41 5.22 0.09 -11.57 16
15 C -0.22 -3.33 6.33 -37.91 -0.24 -3.57 16
16 C 0.11 1.44 10.93 -17.41 -0.19 1.25 16
17 N -0.39 -5.14 3.15 -61.77 -0.19 -5.33 16
18 C -0.05 -0.55 7.72 -15.64 -0.12 -0.67 16
19 Br 0.03 0.27 34.10 -68.01 -2.32 -2.05 16
20 C 0.08 0.85 11.79 -18.00 -0.21 0.64 16
21 N -0.45 -6.15 11.32 -13.48 -0.15 -6.31 16
22 C 0.16 2.15 8.92 -88.48 -0.79 1.36 16
23 S 0.25 3.10 22.40 -107.50 -2.41 0.69 16
24 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16
25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16
26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16
28 H 0.39 6.65 7.64 -40.82 -0.31 6.34 16
29 H 0.20 2.47 7.97 -52.48 -0.42 2.05 16
30 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16
LS Contribution 303.57 15.07 4.57 4.57
Total: -1.00 -29.00 303.57 -9.22 -38.22
By element:
Atomic # 1 Polarization: 5.64 SS G_CDS: -2.25 Total: 3.39 kcal
Atomic # 6 Polarization: 2.46 SS G_CDS: -1.88 Total: 0.58 kcal
Atomic # 7 Polarization: -48.73 SS G_CDS: 0.00 Total: -48.73 kcal
Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal
Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal
Atomic # 16 Polarization: 3.10 SS G_CDS: -2.41 Total: 0.69 kcal
Atomic # 35 Polarization: 0.27 SS G_CDS: -2.32 Total: -2.05 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -29.00 -9.22 -38.22 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815151350.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.783 kcal
(2) G-P(sol) polarization free energy of solvation -29.003 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.780 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds