Wall clock time and date at job start Sat Apr 11 2020 06:46:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47533 * 2 1
4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3
5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1
6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1
7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4
10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4
11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4
12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3
13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1
14 14 O 1.21668 * 119.99850 * 0.02562 * 13 12 2
15 15 C 1.46866 * 119.99920 * 180.02562 * 13 12 2
16 16 C 1.33002 * 125.21922 * 180.02562 * 15 13 12
17 17 N 1.36248 * 116.11536 * 179.97438 * 16 15 13
18 18 C 1.39115 * 139.30585 * 179.97438 * 17 16 15
19 19 Br 1.89101 * 126.44624 * 359.97438 * 18 17 16
20 20 C 1.34273 * 107.10569 * 179.97438 * 18 17 16
21 21 N 1.34013 * 108.45416 * 0.02562 * 20 18 17
22 22 C 1.32247 * 109.19133 * 359.97438 * 21 20 18
23 23 S 1.75790 * 125.22096 * 359.69650 * 15 13 12
24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3
25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3
27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4
28 28 H 0.96992 * 120.00062 * 265.00053 * 12 2 1
29 29 H 1.08008 * 121.94142 * 359.97438 * 16 15 13
30 30 H 1.08001 * 125.77370 * 179.97438 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7104 1.2304
5 1 2.6532 -1.5885 1.1313
6 6 1.6993 -0.2394 2.4827
7 7 0.9436 0.8301 2.6034
8 14 2.3215 -1.1204 4.0079
9 1 3.8065 -1.1210 4.0080
10 1 1.8271 -0.4200 5.2204
11 1 1.8261 -2.5204 4.0076
12 7 2.0184 -0.6906 -1.1962
13 6 2.1470 -0.0182 -2.3572
14 8 1.8580 1.1624 -2.4117
15 6 2.6361 -0.7106 -3.5565
16 6 2.8028 -0.1504 -4.7512
17 7 3.2689 -0.9674 -5.7369
18 6 3.6039 -0.9079 -7.0858
19 35 3.5017 0.6147 -8.2026
20 6 4.0135 -2.1350 -7.4455
21 7 3.9415 -2.9372 -6.3745
22 6 3.4946 -2.2436 -5.3410
23 16 3.0986 -2.4049 -3.6312
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5139 -0.8900
27 1 0.7096 1.1617 3.4844
28 1 2.2491 -1.6316 -1.1527
29 1 2.5816 0.8916 -4.9296
30 1 4.3443 -2.4264 -8.4315
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815151350.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:46:10
Heat of formation + Delta-G solvation = 47.226167 kcal
Electronic energy + Delta-G solvation = -18649.332205 eV
Core-core repulsion = 15425.549315 eV
Total energy + Delta-G solvation = -3223.782891 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 342.973 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-44.03083 -40.86500 -37.81885 -36.77002 -34.46286 -33.39659 -32.20221 -30.74161
-29.71807 -27.35834 -26.05195 -24.48596 -22.89638 -21.83455 -21.29733 -19.76909
-19.05764 -17.66171 -17.62048 -17.37482 -17.04395 -16.35669 -16.04232 -15.60950
-15.31503 -14.95387 -14.47797 -14.39747 -13.80608 -13.29724 -13.03929 -12.87337
-12.75760 -12.65711 -12.64936 -12.28431 -12.16710 -12.09846 -11.46254 -11.37831
-11.29254 -11.14586 -10.61479 -10.23594 -9.93477 -8.96725 -8.18706 -6.36266
-0.87387 -0.53105 -0.12740 0.26922 0.54788 1.09578 1.44339 1.47941
1.48956 1.56770 1.91797 2.21983 2.47156 3.10562 3.12913 3.40748
3.60425 3.99872 4.04417 4.48526 4.73438 4.90128 5.04658 5.09997
5.18815 5.33552 5.48355 5.62816 5.81807 6.05634 6.19431 6.62373
6.70380 7.11197 7.36895 8.87362
Molecular weight = 342.97amu
Principal moments of inertia in cm(-1)
A = 0.027157 B = 0.002734 C = 0.002547
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1030.783284 B =10237.966465 C =10990.325626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.272 3.728
3 H 0.012 0.988
4 C -0.552 4.552
5 H 0.075 0.925
6 C 0.020 3.980
7 N -0.914 5.914
8 Si 0.970 3.030
9 H -0.271 1.271
10 H -0.287 1.287
11 H -0.264 1.264
12 N -0.690 5.690
13 C 0.587 3.413
14 O -0.569 6.569
15 C -0.246 4.246
16 C 0.126 3.874
17 N -0.394 5.394
18 C -0.056 4.056
19 Br 0.050 6.950
20 C 0.082 3.918
21 N -0.469 5.469
22 C 0.139 3.861
23 S 0.281 5.719
24 H 0.071 0.929
25 H 0.042 0.958
26 H 0.017 0.983
27 H 0.267 0.733
28 H 0.402 0.598
29 H 0.204 0.796
30 H 0.233 0.767
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.806 -5.318 -21.900 23.272
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.169 3.831
3 H 0.029 0.971
4 C -0.590 4.590
5 H 0.093 0.907
6 C -0.181 4.181
7 N -0.552 5.552
8 Si 0.794 3.206
9 H -0.196 1.196
10 H -0.212 1.212
11 H -0.188 1.188
12 N -0.338 5.338
13 C 0.371 3.629
14 O -0.450 6.450
15 C -0.369 4.369
16 C -0.009 4.009
17 N -0.073 5.073
18 C -0.247 4.247
19 Br 0.133 6.867
20 C -0.071 4.071
21 N -0.193 5.193
22 C -0.227 4.227
23 S 0.533 5.467
24 H 0.089 0.911
25 H 0.061 0.939
26 H 0.037 0.963
27 H 0.076 0.924
28 H 0.237 0.763
29 H 0.221 0.779
30 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges 5.697 -5.652 -21.196 22.665
hybrid contribution -0.052 1.266 0.180 1.280
sum 5.645 -4.386 -21.017 22.199
Atomic orbital electron populations
1.21941 0.97709 0.99864 1.00113 1.18520 0.91502 0.92289 0.80770
0.97061 1.21485 1.33045 1.13857 0.90625 0.90697 1.25729 0.94732
0.95504 1.02144 1.70020 1.36671 1.23701 1.24834 0.85427 0.78705
0.78779 0.77645 1.19568 1.21246 1.18846 1.46204 1.64208 1.13957
1.09420 1.16843 0.78083 0.85865 0.82070 1.90808 1.52887 1.16347
1.84968 1.23458 1.15014 1.00607 0.97784 1.20633 0.96410 0.98795
0.85093 1.43611 1.45318 1.09788 1.08631 1.23462 1.19412 0.99082
0.82771 1.96828 1.97981 1.33354 1.58549 1.23106 0.98388 0.86065
0.99492 1.70809 1.20735 1.30790 0.97008 1.27002 1.08082 0.84537
1.03034 1.84823 1.68064 1.02042 0.91797 0.91051 0.93877 0.96348
0.92403 0.76259 0.77918 0.75103
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.60 9.26 71.98 0.67 -5.93 16
2 C 0.27 13.35 2.56 44.24 0.11 13.46 16
3 H 0.01 0.66 7.58 -2.39 -0.02 0.64 16
4 C -0.55 -27.91 8.73 25.60 0.22 -27.68 16
5 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16
6 C 0.02 1.01 5.30 84.66 0.45 1.46 16
7 N -0.91 -50.42 11.32 21.45 0.24 -50.18 16
8 Si 0.97 40.45 29.54 68.60 2.03 42.47 16
9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16
10 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16
11 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16
12 N -0.69 -27.22 5.07 -449.90 -2.28 -29.50 16
13 C 0.59 22.20 7.75 86.50 0.67 22.87 16
14 O -0.57 -25.65 16.41 -4.25 -0.07 -25.72 16
15 C -0.25 -7.12 6.33 23.36 0.15 -6.97 16
16 C 0.13 3.29 10.93 82.84 0.91 4.19 16
17 N -0.39 -9.74 3.15 -349.35 -1.10 -10.84 16
18 C -0.06 -1.18 7.72 82.63 0.64 -0.54 16
19 Br 0.05 0.83 34.10 -20.37 -0.69 0.14 16
20 C 0.08 1.59 11.79 83.45 0.98 2.57 16
21 N -0.47 -11.73 11.32 -196.56 -2.23 -13.95 16
22 C 0.14 3.57 8.92 179.60 1.60 5.17 16
23 S 0.28 6.71 22.40 -56.49 -1.27 5.45 16
24 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16
25 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16
26 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16
27 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16
28 H 0.40 13.50 7.64 -92.71 -0.71 12.79 16
29 H 0.20 4.93 7.97 -2.91 -0.02 4.91 16
30 H 0.23 2.51 8.06 -2.91 -0.02 2.49 16
Total: -1.00 -62.42 303.57 1.54 -60.88
By element:
Atomic # 1 Polarization: 12.14 SS G_CDS: 0.50 Total: 12.64 kcal
Atomic # 6 Polarization: 2.21 SS G_CDS: 6.40 Total: 8.61 kcal
Atomic # 7 Polarization: -99.11 SS G_CDS: -5.36 Total: -104.47 kcal
Atomic # 8 Polarization: -25.65 SS G_CDS: -0.07 Total: -25.72 kcal
Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal
Atomic # 16 Polarization: 6.71 SS G_CDS: -1.27 Total: 5.45 kcal
Atomic # 35 Polarization: 0.83 SS G_CDS: -0.69 Total: 0.14 kcal
Total: -62.42 1.54 -60.88 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815151350.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.104 kcal
(2) G-P(sol) polarization free energy of solvation -62.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.688 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.878 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.226 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds