Wall clock time and date at job start Sat Apr 11 2020 06:48:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42903 * 109.46977 * 2 1
4 4 C 1.42898 * 113.99653 * 180.02562 * 3 2 1
5 5 C 1.53003 * 109.47153 * 179.97438 * 4 3 2
6 6 O 1.42901 * 109.46811 * 64.99478 * 5 4 3
7 7 C 1.42901 * 113.99460 * 180.02562 * 6 5 4
8 8 H 1.08999 * 109.47388 * 30.00501 * 7 6 5
9 9 C 1.53001 * 109.47308 * 270.00037 * 7 6 5
10 10 C 1.50704 * 109.46952 * 150.00514 * 7 6 5
11 11 O 1.21284 * 120.00015 * 4.99373 * 10 7 6
12 12 N 1.34776 * 120.00089 * 185.00312 * 10 7 6
13 13 C 1.46501 * 120.00057 * 179.97438 * 12 10 7
14 14 C 1.53001 * 109.46950 * 179.97438 * 13 12 10
15 15 H 1.08997 * 109.42636 * 295.06296 * 14 13 12
16 16 C 1.54314 * 109.18660 * 175.34884 * 14 13 12
17 17 C 1.47088 * 110.29445 * 168.69534 * 16 14 13
18 18 C 1.52566 * 114.33226 * 62.72921 * 17 16 14
19 19 C 1.50886 * 109.35433 * 274.98428 * 18 17 16
20 20 C 1.53949 * 110.09330 * 91.88272 * 19 18 17
21 21 N 1.44576 * 109.45029 * 55.00395 * 14 13 12
22 22 C 1.36932 * 118.64676 * 30.75568 * 21 14 13
23 23 H 1.08002 * 119.99848 * 28.06591 * 22 21 14
24 24 C 1.38810 * 120.00242 * 208.06687 * 22 21 14
25 25 N 1.31617 * 120.00010 * 15.47282 * 24 22 21
26 26 Si 1.86802 * 119.99835 * 195.46997 * 24 22 21
27 27 H 1.48503 * 109.46994 * 265.60607 * 26 24 22
28 28 H 1.48507 * 109.47117 * 145.61039 * 26 24 22
29 29 H 1.48494 * 109.47466 * 25.61206 * 26 24 22
30 30 H 1.08996 * 109.47184 * 60.00156 * 1 2 3
31 31 H 1.08999 * 109.47252 * 180.02562 * 1 2 3
32 32 H 1.09007 * 109.47015 * 300.00364 * 1 2 3
33 33 H 1.08993 * 109.46949 * 239.99651 * 2 1 3
34 34 H 1.09000 * 109.46784 * 119.99216 * 2 1 3
35 35 H 1.08999 * 109.47325 * 59.99474 * 4 3 2
36 36 H 1.09001 * 109.47032 * 299.99364 * 4 3 2
37 37 H 1.09004 * 109.46609 * 304.99674 * 5 4 3
38 38 H 1.08994 * 109.47018 * 184.99741 * 5 4 3
39 39 H 1.08997 * 109.46898 * 60.00323 * 9 7 6
40 40 H 1.08999 * 109.47113 * 180.02562 * 9 7 6
41 41 H 1.08999 * 109.47275 * 300.00533 * 9 7 6
42 42 H 0.97000 * 120.00268 * 359.97438 * 12 10 7
43 43 H 1.09000 * 109.47183 * 59.99415 * 13 12 10
44 44 H 1.08999 * 109.46945 * 299.99754 * 13 12 10
45 45 H 1.08996 * 109.40316 * 48.39687 * 16 14 13
46 46 H 1.09007 * 109.14021 * 288.82070 * 16 14 13
47 47 H 1.09003 * 108.50823 * 301.47651 * 17 16 14
48 48 H 1.09002 * 108.38725 * 183.89951 * 17 16 14
49 49 H 1.08997 * 109.49388 * 155.01607 * 18 17 16
50 50 H 1.08999 * 109.48778 * 34.94404 * 18 17 16
51 51 H 1.08996 * 109.36492 * 331.69000 * 19 18 17
52 52 H 1.08994 * 109.26252 * 212.01246 * 19 18 17
53 53 H 1.09001 * 108.94106 * 198.74548 * 20 19 18
54 54 H 1.09000 * 108.94593 * 80.12862 * 20 19 18
55 55 H 0.96999 * 119.99868 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4308 1.4601 -0.0006
5 6 3.8254 2.9384 -0.0012
6 8 3.3985 3.5458 1.2198
7 6 3.7193 4.9346 1.3213
8 1 3.7307 5.3785 0.3258
9 6 5.0974 5.0939 1.9666
10 6 2.6845 5.6286 2.1690
11 8 1.8147 4.9826 2.7141
12 7 2.7254 6.9671 2.3211
13 6 1.7191 7.6418 3.1448
14 6 1.9918 9.1473 3.1518
15 1 2.9453 9.3407 3.6431
16 6 0.8632 9.8635 3.9230
17 6 1.2299 11.2648 4.1790
18 6 1.4213 12.1046 2.9198
19 6 2.8302 11.9272 2.4097
20 6 2.8810 10.7793 1.3851
21 7 2.0438 9.6335 1.7913
22 6 1.2808 9.0087 0.8413
23 1 0.3625 8.5158 1.1246
24 6 1.6875 9.0089 -0.4859
25 7 2.9261 9.3294 -0.7946
26 14 0.4767 8.5541 -1.8338
27 1 0.6076 7.1091 -2.1499
28 1 0.7664 9.3551 -3.0503
29 1 -0.9063 8.8368 -1.3730
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5137 0.8901
35 1 3.8333 0.9766 -0.8907
36 1 3.8340 0.9765 0.8892
37 1 3.3493 3.4411 -0.8430
38 1 4.9082 3.0254 -0.0911
39 1 5.8459 4.5920 1.3535
40 1 5.3419 6.1533 2.0444
41 1 5.0860 4.6500 2.9620
42 1 3.4211 7.4838 1.8853
43 1 1.7680 7.2592 4.1642
44 1 0.7274 7.4538 2.7334
45 1 0.6944 9.3554 4.8724
46 1 -0.0507 9.8324 3.3296
47 1 2.1583 11.2807 4.7500
48 1 0.4455 11.7206 4.7832
49 1 1.2488 13.1552 3.1536
50 1 0.7144 11.7809 2.1559
51 1 3.4906 11.6954 3.2452
52 1 3.1595 12.8510 1.9342
53 1 3.9129 10.4442 1.2801
54 1 2.5311 11.1493 0.4214
55 1 3.2102 9.3298 -1.7221
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001485484654.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:48:25
Heat of formation + Delta-G solvation = -136.333787 kcal
Electronic energy + Delta-G solvation = -32273.266570 eV
Core-core repulsion = 28117.080956 eV
Total energy + Delta-G solvation = -4156.185614 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 342.235 amu
Computer time = 1.43 seconds
Orbital eigenvalues (eV)
-40.97848 -39.81676 -39.21773 -38.17034 -35.96758 -35.22123 -33.71476 -32.92573
-32.47193 -31.86537 -29.84580 -28.60810 -27.30120 -25.31785 -25.14865 -23.70598
-23.63515 -23.22625 -21.49777 -20.87426 -20.77862 -18.66413 -18.27563 -17.79545
-17.65409 -17.22941 -16.92262 -16.57846 -16.15693 -16.13633 -15.94013 -15.54296
-15.52003 -15.20190 -14.78606 -14.58160 -14.33820 -14.28516 -13.78689 -13.70400
-13.66275 -13.38931 -13.31188 -13.13044 -13.07887 -12.89498 -12.83364 -12.72361
-12.61914 -12.37710 -12.29261 -12.14644 -12.00919 -11.87344 -11.54129 -11.38827
-11.30383 -11.19101 -11.05584 -10.92075 -10.56288 -10.40449 -10.34294 -9.79402
-8.53661 -7.80000 -5.22068 1.38476 1.44765 1.49682 1.71925 2.05148
2.52402 2.75244 2.99103 3.34934 3.61005 3.77440 3.97323 4.03239
4.05993 4.10863 4.11223 4.14767 4.21853 4.28826 4.29833 4.42454
4.44405 4.46540 4.47504 4.51288 4.63407 4.64180 4.68362 4.77668
4.79202 4.84861 4.85624 4.99010 5.02715 5.09039 5.15141 5.16465
5.21901 5.27348 5.28191 5.40019 5.44615 5.56960 5.66429 5.70345
5.77843 5.81461 5.92309 6.08029 6.33030 6.48258 6.77432 7.27946
7.40008 8.01845 8.39518 9.23483
Molecular weight = 342.24amu
Principal moments of inertia in cm(-1)
A = 0.012237 B = 0.003154 C = 0.002926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2287.666607 B = 8875.534004 C = 9566.496313
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.051 3.949
3 O -0.419 6.419
4 C 0.065 3.935
5 C 0.051 3.949
6 O -0.378 6.378
7 C 0.073 3.927
8 H 0.084 0.916
9 C -0.154 4.154
10 C 0.505 3.495
11 O -0.587 6.587
12 N -0.684 5.684
13 C 0.133 3.867
14 C 0.176 3.824
15 H 0.061 0.939
16 C -0.130 4.130
17 C -0.100 4.100
18 C -0.104 4.104
19 C -0.132 4.132
20 C 0.189 3.811
21 N -0.587 5.587
22 C -0.233 4.233
23 H 0.043 0.957
24 C -0.021 4.021
25 N -0.914 5.914
26 Si 0.923 3.077
27 H -0.300 1.300
28 H -0.290 1.290
29 H -0.285 1.285
30 H 0.053 0.947
31 H 0.097 0.903
32 H 0.044 0.956
33 H 0.067 0.933
34 H 0.055 0.945
35 H 0.095 0.905
36 H 0.064 0.936
37 H 0.044 0.956
38 H 0.100 0.900
39 H 0.092 0.908
40 H 0.079 0.921
41 H 0.064 0.936
42 H 0.410 0.590
43 H 0.065 0.935
44 H 0.036 0.964
45 H 0.072 0.928
46 H 0.039 0.961
47 H 0.063 0.937
48 H 0.061 0.939
49 H 0.063 0.937
50 H 0.040 0.960
51 H 0.061 0.939
52 H 0.061 0.939
53 H 0.007 0.993
54 H 0.037 0.963
55 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.153 -8.314 4.719 11.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.025 4.025
3 O -0.340 6.340
4 C -0.011 4.011
5 C -0.025 4.025
6 O -0.297 6.297
7 C 0.012 3.988
8 H 0.102 0.898
9 C -0.212 4.212
10 C 0.291 3.709
11 O -0.468 6.468
12 N -0.334 5.334
13 C 0.008 3.992
14 C 0.068 3.932
15 H 0.079 0.921
16 C -0.170 4.170
17 C -0.137 4.137
18 C -0.142 4.142
19 C -0.171 4.171
20 C 0.064 3.936
21 N -0.309 5.309
22 C -0.364 4.364
23 H 0.061 0.939
24 C -0.218 4.218
25 N -0.560 5.560
26 Si 0.755 3.245
27 H -0.228 1.228
28 H -0.216 1.216
29 H -0.211 1.211
30 H 0.072 0.928
31 H 0.116 0.884
32 H 0.064 0.936
33 H 0.086 0.914
34 H 0.074 0.926
35 H 0.113 0.887
36 H 0.082 0.918
37 H 0.062 0.938
38 H 0.118 0.882
39 H 0.110 0.890
40 H 0.098 0.902
41 H 0.083 0.917
42 H 0.247 0.753
43 H 0.083 0.917
44 H 0.055 0.945
45 H 0.091 0.909
46 H 0.058 0.942
47 H 0.082 0.918
48 H 0.079 0.921
49 H 0.082 0.918
50 H 0.059 0.941
51 H 0.080 0.920
52 H 0.080 0.920
53 H 0.025 0.975
54 H 0.055 0.945
55 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 5.418 -8.668 5.103 11.425
hybrid contribution -0.523 -0.043 -1.730 1.808
sum 4.895 -8.712 3.373 10.546
Atomic orbital electron populations
1.21786 0.93878 1.03326 1.02015 1.22649 0.95888 0.82871 1.01113
1.88014 1.22146 1.28203 1.95611 1.22667 0.81344 0.94790 1.02334
1.22927 1.00165 0.93249 0.86205 1.88037 1.81715 1.20985 1.38930
1.21896 0.94414 0.83237 0.99226 0.89832 1.22132 0.93398 1.03760
1.01893 1.20831 0.85798 0.82809 0.81489 1.90617 1.39102 1.66417
1.50623 1.45619 1.31777 1.05670 1.50317 1.21477 0.91227 0.93286
0.93170 1.20549 0.97051 0.89407 0.86199 0.92127 1.21218 0.99022
0.97135 0.99672 1.20271 1.01597 0.94715 0.97138 1.20914 0.96959
0.98816 0.97481 1.21937 0.97105 0.98610 0.99420 1.20793 0.92359
0.85485 0.94920 1.43751 1.51455 1.32371 1.03362 1.18926 1.00395
1.28825 0.88222 0.93911 1.25163 0.96105 1.01574 0.98909 1.70090
1.14810 1.54260 1.16889 0.85960 0.80412 0.76898 0.81270 1.22810
1.21633 1.21055 0.92779 0.88400 0.93643 0.91436 0.92625 0.88723
0.91821 0.93771 0.88245 0.88964 0.90188 0.91672 0.75338 0.91733
0.94548 0.90917 0.94188 0.91805 0.92079 0.91829 0.94083 0.92013
0.92047 0.97498 0.94478 0.94352
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.28 10.28 71.98 0.74 -2.54 16
2 C 0.05 1.11 6.66 71.98 0.48 1.59 16
3 O -0.42 -12.92 10.31 -144.33 -1.49 -14.41 16
4 C 0.06 1.52 6.32 71.98 0.45 1.98 16
5 C 0.05 1.36 6.13 71.98 0.44 1.80 16
6 O -0.38 -13.61 9.49 -125.58 -1.19 -14.80 16
7 C 0.07 2.54 3.13 29.85 0.09 2.63 16
8 H 0.08 2.92 7.79 -2.39 -0.02 2.90 16
9 C -0.15 -3.93 9.48 71.98 0.68 -3.25 16
10 C 0.50 21.35 7.18 87.66 0.63 21.98 16
11 O -0.59 -29.52 16.51 15.95 0.26 -29.26 16
12 N -0.68 -27.35 4.68 -463.05 -2.17 -29.52 16
13 C 0.13 5.23 4.50 86.38 0.39 5.62 16
14 C 0.18 6.39 2.17 45.80 0.10 6.49 16
15 H 0.06 2.05 8.06 -2.39 -0.02 2.03 16
16 C -0.13 -4.15 5.04 29.20 0.15 -4.01 16
17 C -0.10 -2.78 5.15 28.61 0.15 -2.64 16
18 C -0.10 -3.25 5.51 29.76 0.16 -3.08 16
19 C -0.13 -4.31 5.71 30.23 0.17 -4.13 16
20 C 0.19 7.99 4.67 86.49 0.40 8.39 16
21 N -0.59 -25.26 1.78 -675.33 -1.21 -26.47 16
22 C -0.23 -11.69 7.63 84.03 0.64 -11.05 16
23 H 0.04 2.32 6.73 -2.91 -0.02 2.30 16
24 C -0.02 -1.09 4.86 84.86 0.41 -0.67 16
25 N -0.91 -48.12 11.13 21.65 0.24 -47.88 16
26 Si 0.92 44.85 29.58 68.60 2.03 46.88 16
27 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16
28 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16
29 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16
30 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16
31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16
32 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16
33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
37 H 0.04 1.30 8.08 -2.38 -0.02 1.28 16
38 H 0.10 1.90 7.87 -2.39 -0.02 1.88 16
39 H 0.09 1.81 7.87 -2.39 -0.02 1.80 16
40 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16
41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
42 H 0.41 16.42 7.86 -92.71 -0.73 15.69 16
43 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16
44 H 0.04 1.65 6.84 -2.39 -0.02 1.64 16
45 H 0.07 2.00 8.10 -2.39 -0.02 1.99 16
46 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16
47 H 0.06 1.61 7.36 -2.39 -0.02 1.59 16
48 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
49 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
50 H 0.04 1.56 7.48 -2.39 -0.02 1.54 16
51 H 0.06 1.82 7.32 -2.39 -0.02 1.80 16
52 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
53 H 0.01 0.31 8.02 -2.39 -0.02 0.30 16
54 H 0.04 1.82 6.47 -2.39 -0.02 1.80 16
55 H 0.25 12.95 8.31 -92.71 -0.77 12.18 16
Total: -1.00 -67.98 427.13 2.69 -65.29
By element:
Atomic # 1 Polarization: 30.94 SS G_CDS: 0.11 Total: 31.05 kcal
Atomic # 6 Polarization: 13.02 SS G_CDS: 6.10 Total: 19.11 kcal
Atomic # 7 Polarization: -100.73 SS G_CDS: -3.13 Total: -103.87 kcal
Atomic # 8 Polarization: -56.05 SS G_CDS: -2.42 Total: -58.47 kcal
Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal
Total: -67.98 2.69 -65.29 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485484654.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.043 kcal
(2) G-P(sol) polarization free energy of solvation -67.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.334 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.43 seconds