Wall clock time and date at job start Sat Apr 11 2020 06:47:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86797 * 120.00550 * 2 1
4 4 H 1.48493 * 109.46917 * 85.05197 * 3 2 1
5 5 H 1.48496 * 109.47155 * 205.05518 * 3 2 1
6 6 H 1.48502 * 109.46971 * 325.05362 * 3 2 1
7 7 C 1.38817 * 119.99618 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00064 * 187.04431 * 7 2 1
9 9 N 1.36935 * 120.00009 * 7.04656 * 7 2 1
10 10 C 1.47167 * 135.99912 * 2.89853 * 9 7 2
11 11 C 1.52640 * 87.95126 * 206.72169 * 10 9 7
12 12 C 1.47177 * 136.00170 * 183.27112 * 9 7 2
13 13 C 1.52782 * 114.15157 * 220.84360 * 11 10 9
14 14 N 1.47376 * 108.05646 * 179.02259 * 13 11 10
15 15 C 1.34772 * 121.06579 * 228.21133 * 14 13 11
16 16 O 1.21627 * 119.99947 * 173.38467 * 15 14 13
17 17 C 1.47228 * 120.00051 * 353.38374 * 15 14 13
18 18 N 1.30598 * 125.53302 * 352.67132 * 17 15 14
19 19 C 1.30738 * 115.89427 * 179.78171 * 18 17 15
20 20 Cl 1.73599 * 122.11844 * 180.22193 * 19 18 17
21 21 C 1.34328 * 115.75845 * 0.51433 * 19 18 17
22 22 S 1.71067 * 109.09420 * 359.72729 * 21 19 18
23 23 C 1.47117 * 117.86569 * 48.22571 * 14 13 11
24 24 C 1.53222 * 108.74659 * 307.69670 * 23 14 13
25 25 O 1.42383 * 114.13082 * 88.43055 * 11 10 9
26 26 H 0.97001 * 119.99496 * 359.97438 * 1 2 3
27 27 H 1.08999 * 113.48908 * 321.42143 * 10 9 7
28 28 H 1.08997 * 113.49070 * 91.92973 * 10 9 7
29 29 H 1.09003 * 113.48893 * 268.07232 * 12 9 7
30 30 H 1.08999 * 113.49038 * 38.51340 * 12 9 7
31 31 H 1.09001 * 109.74805 * 298.65810 * 13 11 10
32 32 H 1.09000 * 109.74630 * 59.38768 * 13 11 10
33 33 H 1.08008 * 125.45258 * 179.75521 * 21 19 18
34 34 H 1.09003 * 109.58853 * 67.47315 * 23 14 13
35 35 H 1.09002 * 109.59180 * 187.91470 * 23 14 13
36 36 H 1.09008 * 109.49517 * 174.18251 * 24 23 14
37 37 H 1.09006 * 109.49584 * 294.22885 * 24 23 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 2.3933 2.1066 1.3948
5 1 3.5962 1.4120 -0.5929
6 1 1.5040 2.6202 -0.8020
7 6 2.0102 -1.2022 -0.0005
8 1 3.0841 -1.2059 0.1142
9 7 1.3332 -2.3835 -0.1465
10 6 -0.0655 -2.7811 -0.3731
11 6 0.2549 -4.1022 0.3211
12 6 1.6842 -3.8128 -0.1392
13 6 -0.3753 -5.3258 -0.3421
14 7 0.0371 -6.5199 0.4168
15 6 0.5196 -7.6105 -0.2109
16 8 0.9659 -8.5377 0.4375
17 6 0.5063 -7.6797 -1.6815
18 7 -0.0648 -6.8155 -2.4768
19 6 0.0436 -7.0590 -3.7568
20 17 -0.6490 -6.0135 -4.9571
21 6 0.7197 -8.1727 -4.0839
22 16 1.2516 -8.9450 -2.6532
23 6 -0.0951 -6.4833 1.8816
24 6 0.6019 -5.2242 2.4076
25 8 0.0778 -4.0754 1.7336
26 1 -0.4849 0.8401 0.0004
27 1 -0.7847 -2.1691 0.1713
28 1 -0.3197 -2.8945 -1.4270
29 1 1.9107 -4.2097 -1.1288
30 1 2.4409 -4.0706 0.6017
31 1 -1.4614 -5.2356 -0.3249
32 1 -0.0280 -5.4062 -1.3722
33 1 0.8991 -8.5240 -5.0894
34 1 -1.1506 -6.4570 2.1527
35 1 0.3734 -7.3678 2.3131
36 1 0.4235 -5.1303 3.4789
37 1 1.6737 -5.2976 2.2225
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001053394484.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:18
Heat of formation + Delta-G solvation = 59.731273 kcal
Electronic energy + Delta-G solvation = -25944.692471 eV
Core-core repulsion = 22071.712623 eV
Total energy + Delta-G solvation = -3872.979848 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 343.054 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-40.91994 -39.81388 -38.80605 -36.78253 -36.22931 -34.63717 -32.25827 -31.25266
-29.88365 -28.22239 -26.68271 -25.88884 -24.89580 -23.42214 -22.37632 -21.36385
-19.85801 -19.00569 -18.51000 -17.21845 -16.76760 -16.47556 -16.12736 -15.87943
-15.39236 -15.00032 -14.70155 -14.46864 -14.22831 -14.14055 -13.74341 -13.47542
-13.33532 -12.75071 -12.49707 -12.29819 -12.01082 -11.84387 -11.46948 -11.31912
-11.07781 -10.94378 -10.82356 -10.73629 -10.68614 -10.25023 -10.18796 -10.05860
-9.64277 -9.53378 -9.15823 -9.09130 -8.82882 -8.36239 -6.84999 -5.72620
-3.05544 -0.23266 0.60396 0.89559 1.79244 1.90993 2.80045 2.85234
3.41904 3.46558 3.48886 3.78915 4.12546 4.46279 4.48616 4.61627
4.89495 5.02498 5.11472 5.16395 5.25819 5.33056 5.47516 5.56471
5.75064 5.85894 5.96060 6.16427 6.30982 6.38373 6.48811 6.49935
6.82887 6.94923 7.17658 7.21478 7.53231 7.79790 7.86864 8.02424
9.05329 9.73155 10.64022 11.43815
Molecular weight = 343.05amu
Principal moments of inertia in cm(-1)
A = 0.012064 B = 0.003964 C = 0.003243
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2320.474654 B = 7061.303362 C = 8632.271472
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C -0.005 4.005
3 Si 0.911 3.089
4 H -0.288 1.288
5 H -0.281 1.281
6 H -0.290 1.290
7 C -0.216 4.216
8 H 0.080 0.920
9 N -0.598 5.598
10 C 0.169 3.831
11 C 0.047 3.953
12 C 0.101 3.899
13 C 0.076 3.924
14 N -0.579 5.579
15 C 0.599 3.401
16 O -0.534 6.534
17 C 0.001 3.999
18 N -0.411 5.411
19 C 0.108 3.892
20 Cl 0.001 6.999
21 C -0.275 4.275
22 S 0.295 5.705
23 C 0.078 3.922
24 C 0.046 3.954
25 O -0.331 6.331
26 H 0.254 0.746
27 H 0.089 0.911
28 H 0.042 0.958
29 H 0.037 0.963
30 H 0.040 0.960
31 H 0.078 0.922
32 H 0.136 0.864
33 H 0.195 0.805
34 H 0.081 0.919
35 H 0.101 0.899
36 H 0.104 0.896
37 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.154 -20.312 -6.190 21.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.202 4.202
3 Si 0.742 3.258
4 H -0.216 1.216
5 H -0.207 1.207
6 H -0.216 1.216
7 C -0.343 4.343
8 H 0.098 0.902
9 N -0.323 5.323
10 C 0.043 3.957
11 C 0.005 3.995
12 C -0.026 4.026
13 C -0.047 4.047
14 N -0.311 5.311
15 C 0.382 3.618
16 O -0.411 6.411
17 C -0.274 4.274
18 N -0.131 5.131
19 C -0.056 4.056
20 Cl 0.029 6.971
21 C -0.417 4.417
22 S 0.549 5.451
23 C -0.045 4.045
24 C -0.032 4.032
25 O -0.249 6.249
26 H 0.064 0.936
27 H 0.107 0.893
28 H 0.060 0.940
29 H 0.054 0.946
30 H 0.058 0.942
31 H 0.096 0.904
32 H 0.153 0.847
33 H 0.212 0.788
34 H 0.100 0.900
35 H 0.119 0.881
36 H 0.122 0.878
37 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -0.722 -20.632 -5.342 21.324
hybrid contribution 0.047 1.520 -1.150 1.906
sum -0.676 -19.112 -6.491 20.196
Atomic orbital electron populations
1.69832 1.05008 1.25297 1.55998 1.24758 0.95627 0.97426 1.02401
0.86115 0.78649 0.83538 0.77543 1.21557 1.20672 1.21578 1.18856
0.90563 0.81486 1.43429 0.90218 1.45254 1.04423 0.99186 1.83440
1.22006 0.90643 0.87336 0.95732 1.23345 0.97936 0.96013 0.82252
1.22865 0.94674 0.87579 0.97464 1.23171 1.00739 0.82079 0.98670
1.48013 1.60928 1.14401 1.07768 1.16616 0.78774 0.83035 0.83332
1.90845 1.47395 1.37688 1.65194 1.27560 1.04254 0.96685 0.98886
1.66453 1.18542 1.26178 1.01908 1.20587 1.02136 0.93992 0.88860
1.98434 1.82975 1.65551 1.50159 1.26647 1.07081 1.00664 1.07287
1.84081 1.46179 1.22517 0.92275 1.22464 1.02310 1.00861 0.78817
1.22896 0.97657 0.85100 0.97529 1.88057 1.79455 1.39888 1.17494
0.93639 0.89265 0.94030 0.94585 0.94194 0.90352 0.84699 0.78784
0.90039 0.88095 0.87784 0.92769
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 38.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.43 11.45 55.49 0.64 -26.80 16
2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16
3 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16
4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
7 C -0.22 -6.21 10.73 -15.06 -0.16 -6.37 16
8 H 0.08 2.22 7.84 -52.49 -0.41 1.80 16
9 N -0.60 -15.79 3.78 -184.96 -0.70 -16.49 16
10 C 0.17 4.05 6.96 -8.35 -0.06 3.99 16
11 C 0.05 0.92 1.28 -90.96 -0.12 0.81 16
12 C 0.10 2.18 7.91 -8.21 -0.06 2.12 16
13 C 0.08 1.23 5.36 -3.68 -0.02 1.21 16
14 N -0.58 -8.56 3.03 -173.82 -0.53 -9.09 16
15 C 0.60 8.69 7.69 -12.61 -0.10 8.59 16
16 O -0.53 -8.37 16.42 5.25 0.09 -8.28 16
17 C 0.00 0.01 7.17 -14.43 -0.10 -0.09 16
18 N -0.41 -5.47 7.07 -8.62 -0.06 -5.54 16
19 C 0.11 1.24 7.22 -19.40 -0.14 1.10 16
20 Cl 0.00 0.01 29.20 -51.86 -1.51 -1.51 16
21 C -0.27 -2.32 10.93 29.35 0.32 -2.00 16
22 S 0.29 2.63 23.04 -107.50 -2.48 0.16 16
23 C 0.08 1.02 6.61 -3.59 -0.02 1.00 16
24 C 0.05 0.69 6.90 37.27 0.26 0.95 16
25 O -0.33 -6.64 10.53 -35.23 -0.37 -7.01 16
26 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16
27 H 0.09 2.41 6.91 -51.93 -0.36 2.05 16
28 H 0.04 0.97 8.09 -51.93 -0.42 0.55 16
29 H 0.04 0.75 7.93 -51.93 -0.41 0.34 16
30 H 0.04 0.86 7.37 -51.93 -0.38 0.48 16
31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
32 H 0.14 2.20 4.29 -52.77 -0.23 1.97 16
33 H 0.19 1.02 8.06 -52.48 -0.42 0.60 16
34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
35 H 0.10 1.22 7.05 -51.93 -0.37 0.86 16
36 H 0.10 1.29 8.14 -51.92 -0.42 0.86 16
37 H 0.05 0.84 7.31 -51.93 -0.38 0.46 16
LS Contribution 337.24 15.07 5.08 5.08
Total: -1.00 -33.48 337.24 -8.95 -42.44
By element:
Atomic # 1 Polarization: 2.39 SS G_CDS: -3.78 Total: -1.39 kcal
Atomic # 6 Polarization: 11.35 SS G_CDS: -0.30 Total: 11.05 kcal
Atomic # 7 Polarization: -57.26 SS G_CDS: -0.65 Total: -57.91 kcal
Atomic # 8 Polarization: -15.01 SS G_CDS: -0.28 Total: -15.30 kcal
Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal
Atomic # 16 Polarization: 2.63 SS G_CDS: -2.48 Total: 0.16 kcal
Atomic # 17 Polarization: 0.01 SS G_CDS: -1.51 Total: -1.51 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -33.48 -8.95 -42.44 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053394484.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.168 kcal
(2) G-P(sol) polarization free energy of solvation -33.482 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.685 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.731 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds