Wall clock time and date at job start Sat Apr 11 2020 06:47:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86797 * 120.00550 * 2 1
4 4 H 1.48493 * 109.46917 * 85.05197 * 3 2 1
5 5 H 1.48496 * 109.47155 * 205.05518 * 3 2 1
6 6 H 1.48502 * 109.46971 * 325.05362 * 3 2 1
7 7 C 1.38817 * 119.99618 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00064 * 187.04431 * 7 2 1
9 9 N 1.36935 * 120.00009 * 7.04656 * 7 2 1
10 10 C 1.47167 * 135.99912 * 2.89853 * 9 7 2
11 11 C 1.52640 * 87.95126 * 206.72169 * 10 9 7
12 12 C 1.47177 * 136.00170 * 183.27112 * 9 7 2
13 13 C 1.52782 * 114.15157 * 220.84360 * 11 10 9
14 14 N 1.47376 * 108.05646 * 179.02259 * 13 11 10
15 15 C 1.34772 * 121.06579 * 228.21133 * 14 13 11
16 16 O 1.21627 * 119.99947 * 173.38467 * 15 14 13
17 17 C 1.47228 * 120.00051 * 353.38374 * 15 14 13
18 18 N 1.30598 * 125.53302 * 352.67132 * 17 15 14
19 19 C 1.30738 * 115.89427 * 179.78171 * 18 17 15
20 20 Cl 1.73599 * 122.11844 * 180.22193 * 19 18 17
21 21 C 1.34328 * 115.75845 * 0.51433 * 19 18 17
22 22 S 1.71067 * 109.09420 * 359.72729 * 21 19 18
23 23 C 1.47117 * 117.86569 * 48.22571 * 14 13 11
24 24 C 1.53222 * 108.74659 * 307.69670 * 23 14 13
25 25 O 1.42383 * 114.13082 * 88.43055 * 11 10 9
26 26 H 0.97001 * 119.99496 * 359.97438 * 1 2 3
27 27 H 1.08999 * 113.48908 * 321.42143 * 10 9 7
28 28 H 1.08997 * 113.49070 * 91.92973 * 10 9 7
29 29 H 1.09003 * 113.48893 * 268.07232 * 12 9 7
30 30 H 1.08999 * 113.49038 * 38.51340 * 12 9 7
31 31 H 1.09001 * 109.74805 * 298.65810 * 13 11 10
32 32 H 1.09000 * 109.74630 * 59.38768 * 13 11 10
33 33 H 1.08008 * 125.45258 * 179.75521 * 21 19 18
34 34 H 1.09003 * 109.58853 * 67.47315 * 23 14 13
35 35 H 1.09002 * 109.59180 * 187.91470 * 23 14 13
36 36 H 1.09008 * 109.49517 * 174.18251 * 24 23 14
37 37 H 1.09006 * 109.49584 * 294.22885 * 24 23 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 2.3933 2.1066 1.3948
5 1 3.5962 1.4120 -0.5929
6 1 1.5040 2.6202 -0.8020
7 6 2.0102 -1.2022 -0.0005
8 1 3.0841 -1.2059 0.1142
9 7 1.3332 -2.3835 -0.1465
10 6 -0.0655 -2.7811 -0.3731
11 6 0.2549 -4.1022 0.3211
12 6 1.6842 -3.8128 -0.1392
13 6 -0.3753 -5.3258 -0.3421
14 7 0.0371 -6.5199 0.4168
15 6 0.5196 -7.6105 -0.2109
16 8 0.9659 -8.5377 0.4375
17 6 0.5063 -7.6797 -1.6815
18 7 -0.0648 -6.8155 -2.4768
19 6 0.0436 -7.0590 -3.7568
20 17 -0.6490 -6.0135 -4.9571
21 6 0.7197 -8.1727 -4.0839
22 16 1.2516 -8.9450 -2.6532
23 6 -0.0951 -6.4833 1.8816
24 6 0.6019 -5.2242 2.4076
25 8 0.0778 -4.0754 1.7336
26 1 -0.4849 0.8401 0.0004
27 1 -0.7847 -2.1691 0.1713
28 1 -0.3197 -2.8945 -1.4270
29 1 1.9107 -4.2097 -1.1288
30 1 2.4409 -4.0706 0.6017
31 1 -1.4614 -5.2356 -0.3249
32 1 -0.0280 -5.4062 -1.3722
33 1 0.8991 -8.5240 -5.0894
34 1 -1.1506 -6.4570 2.1527
35 1 0.3734 -7.3678 2.3131
36 1 0.4235 -5.1303 3.4789
37 1 1.6737 -5.2976 2.2225
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001053394484.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:47:17
Heat of formation + Delta-G solvation = 36.303841 kcal
Electronic energy + Delta-G solvation = -25945.708361 eV
Core-core repulsion = 22071.712623 eV
Total energy + Delta-G solvation = -3873.995738 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 343.054 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.07573 -40.96327 -40.06340 -37.79513 -37.60326 -35.91873 -34.29186 -32.28088
-31.22119 -29.63768 -28.06909 -27.22007 -26.67893 -24.70468 -23.93148 -22.55530
-20.86549 -20.49600 -19.51544 -18.80323 -18.13948 -17.74849 -17.20876 -17.04762
-16.77687 -16.60903 -16.13017 -15.68478 -15.62755 -15.34002 -15.11036 -14.93042
-14.62602 -14.14855 -14.04866 -13.48385 -13.30804 -12.99939 -12.85589 -12.76811
-12.74245 -12.55771 -12.18358 -12.13352 -11.96290 -11.80977 -11.69142 -11.47065
-10.98784 -10.97265 -10.77363 -10.59105 -9.97011 -9.63101 -8.93254 -7.89738
-5.24836 -1.04939 -0.16122 0.09975 0.89998 1.12313 1.45113 1.47499
1.56634 1.73227 1.84290 2.45851 2.67978 2.81451 3.28322 3.34691
3.53413 3.64368 3.79724 3.85769 3.97129 4.18455 4.26993 4.30887
4.48311 4.55886 4.63760 4.70294 4.80327 4.86030 4.94517 5.13873
5.22067 5.24150 5.46357 5.90187 5.95459 6.07371 6.38420 6.72177
6.88040 7.57813 8.56262 9.26436
Molecular weight = 343.05amu
Principal moments of inertia in cm(-1)
A = 0.012064 B = 0.003964 C = 0.003243
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2320.474654 B = 7061.303362 C = 8632.271472
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.947 5.947
2 C -0.062 4.062
3 Si 0.980 3.020
4 H -0.286 1.286
5 H -0.269 1.269
6 H -0.290 1.290
7 C -0.233 4.233
8 H 0.081 0.919
9 N -0.629 5.629
10 C 0.166 3.834
11 C 0.072 3.928
12 C 0.105 3.895
13 C 0.094 3.906
14 N -0.586 5.586
15 C 0.602 3.398
16 O -0.549 6.549
17 C -0.047 4.047
18 N -0.432 5.432
19 C 0.080 3.920
20 Cl -0.008 7.008
21 C -0.248 4.248
22 S 0.370 5.630
23 C 0.082 3.918
24 C 0.043 3.957
25 O -0.364 6.364
26 H 0.250 0.750
27 H 0.051 0.949
28 H 0.044 0.956
29 H 0.049 0.951
30 H 0.039 0.961
31 H 0.083 0.917
32 H 0.139 0.861
33 H 0.231 0.769
34 H 0.096 0.904
35 H 0.115 0.885
36 H 0.131 0.869
37 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.162 -22.461 -6.966 23.517
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.595 5.595
2 C -0.255 4.255
3 Si 0.808 3.192
4 H -0.213 1.213
5 H -0.193 1.193
6 H -0.217 1.217
7 C -0.361 4.361
8 H 0.099 0.901
9 N -0.355 5.355
10 C 0.040 3.960
11 C 0.030 3.970
12 C -0.021 4.021
13 C -0.030 4.030
14 N -0.318 5.318
15 C 0.387 3.613
16 O -0.428 6.428
17 C -0.319 4.319
18 N -0.152 5.152
19 C -0.084 4.084
20 Cl 0.020 6.980
21 C -0.390 4.390
22 S 0.624 5.376
23 C -0.040 4.040
24 C -0.034 4.034
25 O -0.283 6.283
26 H 0.059 0.941
27 H 0.070 0.930
28 H 0.062 0.938
29 H 0.067 0.933
30 H 0.057 0.943
31 H 0.101 0.899
32 H 0.156 0.844
33 H 0.247 0.753
34 H 0.114 0.886
35 H 0.133 0.867
36 H 0.149 0.851
37 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 0.285 -22.827 -6.100 23.630
hybrid contribution -0.203 2.024 -0.952 2.246
sum 0.082 -20.803 -7.052 21.965
Atomic orbital electron populations
1.70031 1.06478 1.25694 1.57274 1.25624 0.96533 1.00768 1.02588
0.85048 0.77770 0.78995 0.77400 1.21279 1.19325 1.21674 1.19234
0.91015 0.82909 1.42915 0.90090 1.45583 1.05716 1.00420 1.83731
1.21930 0.88931 0.89286 0.95889 1.22894 0.96154 0.95427 0.82524
1.22957 0.95999 0.85133 0.97990 1.22874 1.00578 0.81120 0.98431
1.48020 1.61354 1.14142 1.08266 1.16786 0.77834 0.82449 0.84216
1.90824 1.48028 1.38000 1.65928 1.27269 1.07195 0.99140 0.98325
1.66256 1.18980 1.27135 1.02878 1.20677 1.04043 0.95297 0.88358
1.98428 1.83299 1.66059 1.50174 1.27152 1.03925 0.98831 1.09130
1.83869 1.43519 1.19667 0.90578 1.22505 1.03138 1.00193 0.78157
1.23160 0.97219 0.84383 0.98608 1.87994 1.80001 1.42728 1.17565
0.94133 0.93031 0.93843 0.93330 0.94280 0.89871 0.84415 0.75272
0.88574 0.86655 0.85141 0.93562
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.62 11.45 21.65 0.25 -58.37 16
2 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16
3 Si 0.98 46.78 29.56 68.60 2.03 48.80 16
4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16
5 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16
6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16
7 C -0.23 -13.66 10.73 84.03 0.90 -12.76 16
8 H 0.08 4.56 7.84 -2.91 -0.02 4.54 16
9 N -0.63 -34.08 3.78 -739.96 -2.80 -36.88 16
10 C 0.17 8.24 6.96 83.22 0.58 8.82 16
11 C 0.07 2.89 1.28 -11.01 -0.01 2.87 16
12 C 0.11 4.58 7.91 83.31 0.66 5.24 16
13 C 0.09 2.99 5.36 86.14 0.46 3.46 16
14 N -0.59 -16.67 3.03 -822.09 -2.49 -19.16 16
15 C 0.60 16.59 7.69 86.61 0.67 17.26 16
16 O -0.55 -16.25 16.42 -4.12 -0.07 -16.31 16
17 C -0.05 -1.11 7.17 87.24 0.63 -0.49 16
18 N -0.43 -10.95 7.07 -181.17 -1.28 -12.23 16
19 C 0.08 1.68 7.22 83.96 0.61 2.29 16
20 Cl -0.01 -0.16 29.20 -2.72 -0.08 -0.24 16
21 C -0.25 -3.35 10.93 66.93 0.73 -2.62 16
22 S 0.37 5.40 23.04 -56.49 -1.30 4.10 16
23 C 0.08 2.03 6.61 86.34 0.57 2.60 16
24 C 0.04 1.25 6.90 72.06 0.50 1.75 16
25 O -0.36 -14.73 10.53 -148.98 -1.57 -16.30 16
26 H 0.25 14.92 8.31 -92.71 -0.77 14.14 16
27 H 0.05 2.94 6.91 -2.39 -0.02 2.92 16
28 H 0.04 2.11 8.09 -2.39 -0.02 2.09 16
29 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16
30 H 0.04 1.69 7.37 -2.39 -0.02 1.67 16
31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16
32 H 0.14 4.45 4.29 -4.05 -0.02 4.43 16
33 H 0.23 1.32 8.06 -2.91 -0.02 1.30 16
34 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16
35 H 0.12 2.56 7.05 -2.39 -0.02 2.54 16
36 H 0.13 3.03 8.14 -2.38 -0.02 3.01 16
37 H 0.05 1.41 7.31 -2.38 -0.02 1.39 16
Total: -1.00 -74.40 337.24 0.56 -73.84
By element:
Atomic # 1 Polarization: 6.36 SS G_CDS: 1.12 Total: 7.48 kcal
Atomic # 6 Polarization: 18.52 SS G_CDS: 6.75 Total: 25.27 kcal
Atomic # 7 Polarization: -120.32 SS G_CDS: -6.32 Total: -126.64 kcal
Atomic # 8 Polarization: -30.98 SS G_CDS: -1.64 Total: -32.62 kcal
Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal
Atomic # 16 Polarization: 5.40 SS G_CDS: -1.30 Total: 4.10 kcal
Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal
Total: -74.40 0.56 -73.84 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053394484.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.142 kcal
(2) G-P(sol) polarization free energy of solvation -74.401 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.304 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds